mRNA_M-pyrifera_M_contig120578.4239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120578.4239.1
Unique NamemRNA_M-pyrifera_M_contig120578.4239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A7S1X078_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X078_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-16
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 LCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYN 153
            LCL  R+ PTAT CGHIFCW CI E C  K ECPLCRS++ P TL  +YN
Sbjct:  157 LCLSARRDPTATSCGHIFCWDCISEWCNQKLECPLCRSDINPVTLVPIYN 206
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A2P6NBR4_9EUKA (RING-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NBR4_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.420e-16
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            TLCLE    PTAT CGH+FCW CI E C TK ECPLCR  +TP++L  +YNY
Sbjct: 1164 TLCLEALDHPTATPCGHVFCWNCIMEWCNTKLECPLCRQGLTPSSLMCIYNY 1215
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A507CCP5_9FUNG (RING-type domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CCP5_9FUNG)

HSP 1 Score: 79.3 bits (194), Expect = 3.370e-16
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            TLCLEPRK  TAT CGH+FCW CI E CQ KAECPLCR +V  + L  V N+
Sbjct:  280 TLCLEPRKTTTATPCGHLFCWTCITEWCQNKAECPLCRQHVNVSHLYTVRNF 331
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: UPI00201F67D8 (peroxisome biogenesis factor 10-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201F67D8)

HSP 1 Score: 79.0 bits (193), Expect = 3.550e-16
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 LCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            LCLE R+  T T CGH+FCW CIHE CQTKAECPLCR   +P  L  ++NY
Sbjct:  248 LCLEGRQFSTVTPCGHLFCWKCIHEWCQTKAECPLCRDQFSPHRLVFLHNY 298
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A507C2B7_9FUNG (RING-type domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507C2B7_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 4.470e-16
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYN 153
            TLCLEPRK  TAT CGH+FCW CI E CQ KAECPLCR ++  + L  V N
Sbjct:  213 TLCLEPRKTTTATPCGHLFCWTCITEWCQNKAECPLCRQHINASHLFTVRN 263
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: UPI001B887C0E (peroxisome biogenesis factor 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887C0E)

HSP 1 Score: 77.8 bits (190), Expect = 9.200e-16
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            +LCLE R+  T T CGH+FCWACIHE CQTKAECPLCR    P  L  + N+
Sbjct:  243 SLCLESRRSTTTTPCGHLFCWACIHEWCQTKAECPLCRERFPPHRLVCLVNF 294
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A077WB08_9FUNG (RING-type domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WB08_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 2.070e-15
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    4 LCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            LCLEPRK+ TAT CGH+FCW+C+ E CQ K ECPLCRS+V  A L  + N+
Sbjct:  263 LCLEPRKVTTATPCGHLFCWSCVIEWCQNKPECPLCRSSVNIAHLIPLNNF 313
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A812EBY2_SEPPH (PEX10 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812EBY2_SEPPH)

HSP 1 Score: 76.6 bits (187), Expect = 2.190e-15
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            +LCLEPR+  TAT CGH+FCW CI E CQTK ECPLCR   T + L  + NY
Sbjct:  232 SLCLEPRQNTTATPCGHLFCWNCIQEWCQTKGECPLCREKFTTSRLIFLQNY 283
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: K1R1W6_CRAGI (Peroxisome biogenesis factor 10 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R1W6_CRAGI)

HSP 1 Score: 75.9 bits (185), Expect = 3.460e-15
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 LCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYNY 156
            LCLE R+ PTAT CGH+FCW CI+E C TK ECP+CR  + P  L  + NY
Sbjct:  212 LCLEARRSPTATPCGHLFCWQCIYEWCSTKLECPICRETLQPQKLVFLQNY 262
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BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Match: A0A453B4C2_AEGTS (RING-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B4C2_AEGTS)

HSP 1 Score: 72.0 bits (175), Expect = 3.470e-15
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVYN 153
            TLCL  R+ PTAT CGH+FCW CI E C  K ECPLCR+ +T ++L  +Y+
Sbjct:   40 TLCLSTRQNPTATTCGHVFCWNCIMEWCNEKPECPLCRTPITHSSLICIYH 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120578.4239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1X078_9CHLO1.330e-1664.00Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2P6NBR4_9EUKA2.420e-1663.46RING-type domain-containing protein n=1 Tax=Planop... [more]
A0A507CCP5_9FUNG3.370e-1665.38RING-type domain-containing protein n=1 Tax=Synchy... [more]
UPI00201F67D83.550e-1662.75peroxisome biogenesis factor 10-like n=2 Tax=Halio... [more]
A0A507C2B7_9FUNG4.470e-1664.71RING-type domain-containing protein n=1 Tax=Synchy... [more]
UPI001B887C0E9.200e-1661.54peroxisome biogenesis factor 10-like n=1 Tax=Gigan... [more]
A0A077WB08_9FUNG2.070e-1562.75RING-type domain-containing protein n=1 Tax=Lichth... [more]
A0A812EBY2_SEPPH2.190e-1561.54PEX10 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]
K1R1W6_CRAGI3.460e-1558.82Peroxisome biogenesis factor 10 n=2 Tax=Crassostre... [more]
A0A453B4C2_AEGTS3.470e-1556.86RING-type domain-containing protein n=1 Tax=Aegilo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120578contigM-pyrifera_M_contig120578:374..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score76.3
Seed ortholog evalue5.1e-12
Seed eggNOG ortholog192875.XP_004365772.1
Preferred namePEX10
KEGG koko:K13346
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000038,GO:0000209,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034613,GO:0036211,GO:0040007,GO:0042579,GO:0042760,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048588,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0061630,GO:0061640,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140013,GO:0140096,GO:1901564,GO:1901575,GO:1903046,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.cAMP binding
EggNOG OGs38ESB@33154,COG5574@1,KOG0317@2759
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.363786-CDS-M-pyrifera_M_contig120578:373..5381622815725.363786-CDS-M-pyrifera_M_contig120578:373..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120578 374..538 -
1692277539.935687-CDS-M-pyrifera_M_contig120578:373..5381692277539.935687-CDS-M-pyrifera_M_contig120578:373..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120578 374..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120578.4239.1prot_M-pyrifera_M_contig120578.4239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120578 374..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120578.4239.1

>prot_M-pyrifera_M_contig120578.4239.1 ID=prot_M-pyrifera_M_contig120578.4239.1|Name=mRNA_M-pyrifera_M_contig120578.4239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
TLCLEPRKLPTATECGHIFCWACIHEACQTKAECPLCRSNVTPATLCRVY
NYVV*
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mRNA from alignment at M-pyrifera_M_contig120578:374..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120578.4239.1 ID=mRNA_M-pyrifera_M_contig120578.4239.1|Name=mRNA_M-pyrifera_M_contig120578.4239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig120578:374..538- (Macrocystis pyrifera P11B4 male)
ACCCTCTGCCTCGAGCCGCGCAAGCTCCCCACCGCCACCGAGTGCGGCCA
CATCTTCTGCTGGGCCTGCATCCACGAGGCCTGCCAGACCAAGGCCGAGT
GCCCCCTCTGCAGATCCAACGTCACGCCAGCAACCCTCTGCCGAGTCTAC
AACTATGTCGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120578:374..538-

>mRNA_M-pyrifera_M_contig120578.4239.1 ID=mRNA_M-pyrifera_M_contig120578.4239.1|Name=mRNA_M-pyrifera_M_contig120578.4239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig120578:374..538- (Macrocystis pyrifera P11B4 male)
ACCCTCTGCCTCGAGCCGCGCAAGCTCCCCACCGCCACCGAGTGCGGCCA
CATCTTCTGCTGGGCCTGCATCCACGAGGCCTGCCAGACCAAGGCCGAGT
GCCCCCTCTGCAGATCCAACGTCACGCCAGCAACCCTCTGCCGAGTCTAC
AACTATGTCGTGTGAACCCTCTGCCTCGAGCCGCGCAAGCTCCCCACCGC
CACCGAGTGCGGCCACATCTTCTGCTGGGCCTGCATCCACGAGGCCTGCC
AGACCAAGGCCGAGTGCCCCCTCTGCAGATCCAACGTCACGCCAGCAACC
CTCTGCCGAGTCTACAACTATGTCGTGTGA
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