mRNA_M-pyrifera_M_contig120565.4236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120565.4236.1
Unique NamemRNA_M-pyrifera_M_contig120565.4236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Match: A0A7C1X0Z6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1X0Z6_9BACT)

HSP 1 Score: 123 bits (309), Expect = 1.360e-32
Identity = 69/129 (53.49%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:    1 ATAKELLRTEAAEALAPHDEVPLPTLASFELGSALLDYNAKRYLDSLATTLRPAAGQVLVLEGHAADTEGMDPARERELAFQRAKAVRNYLLETHDFVDERVEARAWLMEVASPDDPSTRAVAGRLVTP 387
            A++ E++RT+AA ALAPHD++  P +A FE GS+ L  +A+RY+D LA  L PA GQ L+LEGHA D           LAF RA AVR+YL+E HDF   RV ARAWL E+ S D P TR+V  RLV P
Sbjct:   94 ASSLEIIRTKAATALAPHDQISQPAIAIFERGSSELTPDAERYIDLLAPMLYPAGGQTLLLEGHALDARNATRQGNALLAFARANAVRSYLIEAHDFPKTRVSARAWLREIDS-DGPGTRSVDARLVIP 221
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BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Match: A0A523PKR7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PKR7_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.440e-30
Identity = 68/127 (53.54%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:   13 ELLRTEAAEALAPHDEVPLPTLASFELGSALLDYNAKRYLDSLATTLRPAAGQVLVLEGHAADTEGMDPARERELAFQRAKAVRNYLLETHDFVDERVEARAWLMEVASPDDPSTRAVAGRLVTPNP 393
            EL+R EA  AL PH E+  P +A+F+ G+A L  +++ YLD LA TLRP   Q LVLEGHA D +         LAF RA AVR YL+E H F+ ERVEARAWL EV   DD +TR V  RLV+P P
Sbjct:  104 ELVRAEALAALEPHHELRQPRIATFDTGAAALRDDSRTYLDQLADTLRPGPKQTLVLEGHALDADERHGGENPWLAFGRASAVRQYLIEKHRFMPERVEARAWLEEVIQ-DDAATRTVDARLVSPIP 229
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BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Match: A0A7Y5PZ71_9PLAN (OmpA family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PZ71_9PLAN)

HSP 1 Score: 117 bits (292), Expect = 5.200e-30
Identity = 72/128 (56.25%), Postives = 86/128 (67.19%), Query Frame = 1 
Query:   13 ELLRTEAAEALAPHDEVPLPTLASFELGSALLDYNAKRYLDSLATTLRPAAGQVLVLEGHAADTE---GMDPARERELAFQRAKAVRNYLLETHDFVDERVEARAWLMEVASPDDPSTRAVAGRLVTP 387
            EL+R  AA+AL PHDE+  P +A+FE GSA L   ++ YLD LA TLRP+  QVL+LEGHA D     G D AR   LA  RA+AVR YLL+ H+   +RVEARAWL+EV  PD   TR V  RLVTP
Sbjct:  102 ELIRAAAAKALEPHDELYQPAVAAFEPGSARLGDASRAYLDRLADTLRPSRTQVLLLEGHALDAGPGFGEDDAR---LALARAEAVREYLLKEHEIPADRVEARAWLVEV-EPDGAGTRCVDARLVTP 225
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BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Match: A0A521K619_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K619_9BACT)

HSP 1 Score: 91.3 bits (225), Expect = 1.530e-19
Identity = 58/115 (50.43%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:   40 ALAPHDEVPLPTLASFELGSALLDYNAKRYLDSLATTLRPAAGQVLVLEGHAADTEGMDPARERELAFQRAKAVRNYLLETHDFVDERVEARAWLMEVASPDDPSTRAVAGRLVT 384
            AL PH E+  P +A FE GS  LD  A+ YLD LA TLRP+ GQVLVLEG+A D +     R   +A  RA+AVR YLL+ H  V  RVEARA   + A+    +T  V  RLVT
Sbjct:  177 ALKPHFELRQPLVARFETGSYELDDRARDYLDLLADTLRPSRGQVLVLEGYARDVKDQPFGRRAWIAASRAQAVRRYLLDEHQLVSTRVEARALADDGATSAAEAT-GVDARLVT 290
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BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Match: A0A8I0VLS1_9PROT (OmpA-like domain-containing protein n=1 Tax=Magnetococcales bacterium TaxID=2026759 RepID=A0A8I0VLS1_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 1.310e-5
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:   46 APHDEVPLPTLASFELGSALLDYNAKRYLDSLATTLRPAAGQVLVLEGHAADTEGMDPARERELAFQRAKAVRNYLLETHDFVDERV----EARAWLMEVASPDDPSTRAV 366
            A  D+V +P   +FELGSA L   AKR++DS+   L+ +    + + GH  D  G + A  R L+ +RA+AVR+YL++ H     R+    E  + L+  +SP     R V
Sbjct:  156 AKKDKVAMPL--TFELGSASLTSEAKRFVDSMGEALKQSQSLTMHISGHT-DISGGE-AVNRPLSMRRAEAVRDYLVQNHQIDSSRLTVSGEGSSNLLIKSSPKAEQNRRV 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120565.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7C1X0Z6_9BACT1.360e-3253.49Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PKR7_9BACT1.440e-3053.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PZ71_9PLAN5.200e-3056.25OmpA family protein n=1 Tax=Planctomycetaceae bact... [more]
A0A521K619_9BACT1.530e-1950.43Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A8I0VLS1_9PROT1.310e-535.14OmpA-like domain-containing protein n=1 Tax=Magnet... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120565contigM-pyrifera_M_contig120565:131..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.187184-CDS-M-pyrifera_M_contig120565:130..5321622815725.187184-CDS-M-pyrifera_M_contig120565:130..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120565 131..532 -
1692277539.8603594-CDS-M-pyrifera_M_contig120565:130..5321692277539.8603594-CDS-M-pyrifera_M_contig120565:130..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120565 131..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120565.4236.1prot_M-pyrifera_M_contig120565.4236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120565 131..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120565.4236.1

>prot_M-pyrifera_M_contig120565.4236.1 ID=prot_M-pyrifera_M_contig120565.4236.1|Name=mRNA_M-pyrifera_M_contig120565.4236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
ATAKELLRTEAAEALAPHDEVPLPTLASFELGSALLDYNAKRYLDSLATT
LRPAAGQVLVLEGHAADTEGMDPARERELAFQRAKAVRNYLLETHDFVDE
RVEARAWLMEVASPDDPSTRAVAGRLVTPNPPE*
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mRNA from alignment at M-pyrifera_M_contig120565:131..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120565.4236.1 ID=mRNA_M-pyrifera_M_contig120565.4236.1|Name=mRNA_M-pyrifera_M_contig120565.4236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig120565:131..532- (Macrocystis pyrifera P11B4 male)
GCGACCGCCAAGGAGCTCCTGCGCACCGAGGCCGCCGAGGCGCTCGCGCC
CCACGACGAGGTGCCGCTGCCGACGCTGGCCAGCTTCGAGCTCGGCTCGG
CGCTCCTGGACTACAACGCCAAGCGCTATCTGGACTCGCTGGCCACGACC
CTGCGGCCCGCCGCCGGCCAGGTGCTGGTCCTCGAGGGCCACGCCGCGGA
CACGGAGGGCATGGATCCGGCCCGCGAACGCGAGCTGGCCTTCCAACGTG
CGAAAGCGGTCCGGAACTACCTCTTGGAAACGCACGATTTTGTCGATGAG
AGGGTCGAGGCCCGGGCCTGGCTGATGGAAGTCGCCAGCCCGGACGACCC
GTCCACGCGCGCCGTCGCGGGCCGCCTCGTGACCCCCAACCCACCCGAAT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120565:131..532-

>mRNA_M-pyrifera_M_contig120565.4236.1 ID=mRNA_M-pyrifera_M_contig120565.4236.1|Name=mRNA_M-pyrifera_M_contig120565.4236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig120565:131..532- (Macrocystis pyrifera P11B4 male)
GCGACCGCCAAGGAGCTCCTGCGCACCGAGGCCGCCGAGGCGCTCGCGCC
CCACGACGAGGTGCCGCTGCCGACGCTGGCCAGCTTCGAGCTCGGCTCGG
CGCTCCTGGACTACAACGCCAAGCGCTATCTGGACTCGCTGGCCACGACC
CTGCGGCCCGCCGCCGGCCAGGTGCTGGTCCTCGAGGGCCACGCCGCGGA
CACGGAGGGCATGGATCCGGCCCGCGAACGCGAGCTGGCCTTCCAACGTG
CGAAAGCGGTCCGGAACTACCTCTTGGAAACGCACGATTTTGTCGATGAG
AGGGTCGAGGCCCGGGCCTGGCTGATGGAAGTCGCCAGCCCGGACGACCC
GTCCACGCGCGCCGTCGCGGGCCGCCTCGTGACCCCCAACCCACCCGAAT
GAGCGACCGCCAAGGAGCTCCTGCGCACCGAGGCCGCCGAGGCGCTCGCG
CCCCACGACGAGGTGCCGCTGCCGACGCTGGCCAGCTTCGAGCTCGGCTC
GGCGCTCCTGGACTACAACGCCAAGCGCTATCTGGACTCGCTGGCCACGA
CCCTGCGGCCCGCCGCCGGCCAGGTGCTGGTCCTCGAGGGCCACGCCGCG
GACACGGAGGGCATGGATCCGGCCCGCGAACGCGAGCTGGCCTTCCAACG
TGCGAAAGCGGTCCGGAACTACCTCTTGGAAACGCACGATTTTGTCGATG
AGAGGGTCGAGGCCCGGGCCTGGCTGATGGAAGTCGCCAGCCCGGACGAC
CCGTCCACGCGCGCCGTCGCGGGCCGCCTCGTGACCCCCAACCCACCCGA
ATGA
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