mRNA_M-pyrifera_M_contig12049.4228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12049.4228.1
Unique NamemRNA_M-pyrifera_M_contig12049.4228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12049.4228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12049contigM-pyrifera_M_contig12049:2110..2592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size483
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.6048238-CDS-M-pyrifera_M_contig12049:2109..24661622815724.6048238-CDS-M-pyrifera_M_contig12049:2109..2466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12049 2110..2466 +
1692277539.4822788-CDS-M-pyrifera_M_contig12049:2109..24661692277539.4822788-CDS-M-pyrifera_M_contig12049:2109..2466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12049 2110..2466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.615193-UTR-M-pyrifera_M_contig12049:2466..25921622815724.615193-UTR-M-pyrifera_M_contig12049:2466..2592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12049 2467..2592 +
1692277539.4921603-UTR-M-pyrifera_M_contig12049:2466..25921692277539.4921603-UTR-M-pyrifera_M_contig12049:2466..2592Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12049 2467..2592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12049.4228.1prot_M-pyrifera_M_contig12049.4228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12049 2110..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12049.4228.1

>prot_M-pyrifera_M_contig12049.4228.1 ID=prot_M-pyrifera_M_contig12049.4228.1|Name=mRNA_M-pyrifera_M_contig12049.4228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
AVYPASYSYVAVCRLQPPSALIACGLKPACTVRHQRRKITLTTPLANPVG
LWRRTKRFLGVFYVYFVAAAALCFSRSPEFEKYDVAGFEPSSNLNRTLTL
RPTTTTITTPMGIHTVHV*
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mRNA from alignment at M-pyrifera_M_contig12049:2110..2592+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12049.4228.1 ID=mRNA_M-pyrifera_M_contig12049.4228.1|Name=mRNA_M-pyrifera_M_contig12049.4228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig12049:2110..2592+ (Macrocystis pyrifera P11B4 male)
GCGGTTTATCCTGCGTCGTACTCCTACGTTGCAGTGTGCCGACTTCAACC
CCCATCGGCGTTAATAGCTTGCGGCCTGAAGCCAGCTTGCACGGTCCGTC
ATCAGCGGCGGAAAATTACCTTAACGACGCCGCTAGCCAATCCCGTTGGG
CTTTGGCGGCGAACGAAACGCTTTCTCGGCGTGTTTTATGTATATTTCGT
CGCTGCTGCTGCTCTTTGTTTCAGCCGATCGCCCGAATTCGAAAAATATG
ATGTCGCTGGTTTCGAACCGAGCTCCAACCTTAACCGAACCTTGACTCTA
AGACCGACCACCACCACCATCACCACCCCGATGGGCATACACACAGTACA
CGTATGACAATACCTGGAAACAACAGAACGACGCACATTGTTGTCTGCTT
TACAGTCATGCAACTTGAGGCCAAAATACCCGAAGTACCATTTCTCTCTA
TTAATACCTGGTACTACAGTAGTTAGTCATGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12049:2110..2592+

>mRNA_M-pyrifera_M_contig12049.4228.1 ID=mRNA_M-pyrifera_M_contig12049.4228.1|Name=mRNA_M-pyrifera_M_contig12049.4228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig12049:2110..2592+ (Macrocystis pyrifera P11B4 male)
GCGGTTTATCCTGCGTCGTACTCCTACGTTGCAGTGTGCCGACTTCAACC
CCCATCGGCGTTAATAGCTTGCGGCCTGAAGCCAGCTTGCACGGTCCGTC
ATCAGCGGCGGAAAATTACCTTAACGACGCCGCTAGCCAATCCCGTTGGG
CTTTGGCGGCGAACGAAACGCTTTCTCGGCGTGTTTTATGTATATTTCGT
CGCTGCTGCTGCTCTTTGTTTCAGCCGATCGCCCGAATTCGAAAAATATG
ATGTCGCTGGTTTCGAACCGAGCTCCAACCTTAACCGAACCTTGACTCTA
AGACCGACCACCACCACCATCACCACCCCGATGGGCATACACACAGTACA
CGTATGAGCGGTTTATCCTGCGTCGTACTCCTACGTTGCAGTGTGCCGAC
TTCAACCCCCATCGGCGTTAATAGCTTGCGGCCTGAAGCCAGCTTGCACG
GTCCGTCATCAGCGGCGGAAAATTACCTTAACGACGCCGCTAGCCAATCC
CGTTGGGCTTTGGCGGCGAACGAAACGCTTTCTCGGCGTGTTTTATGTAT
ATTTCGTCGCTGCTGCTGCTCTTTGTTTCAGCCGATCGCCCGAATTCGAA
AAATATGATGTCGCTGGTTTCGAACCGAGCTCCAACCTTAACCGAACCTT
GACTCTAAGACCGACCACCACCACCATCACCACCCCGATGGGCATACACA
CAGTACACGTATGA
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