mRNA_M-pyrifera_M_contig120476.4227.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120476.4227.1
Unique NamemRNA_M-pyrifera_M_contig120476.4227.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: UPI001C8E9359 (T9SS type A sorting domain-containing protein n=1 Tax=Crocinitomix sp. GM2_3_6_6 TaxID=2862509 RepID=UPI001C8E9359)

HSP 1 Score: 167 bits (424), Expect = 4.130e-45
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    7 IDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQGPQGTFIN-NYILSGLAPMDADLNIDAVNVIPLSQNITLTNGA-DCGIFAGYGILIVWSAADFKYYKIDIATGTVSDLGVGTLNAYASENWA 507
            ID+I+ T  VISDH+ ++GDDR G+A +P+Y Y VGDG T R +      W +LP RDGIFSD+  G LYTLW+ T GP GT++  +Y +S +APMD DL I++ + I LS  I + N + D GIFAG GI+++W++ D  +Y+ID+ TG V+DL   T+NA+++EN A
Sbjct:  356 IDTITATNFVISDHDATTGDDRSGVAFSPNYFYVVGDGATGRIDLDFAGAWTALPIRDGIFSDISNGDLYTLWNGTAGPSGTYLGTDYTISHIAPMDEDLVINSGSAIALSTPIVVNNNSGDFGIFAGDGIVVIWTSQDENFYQIDLGTGFVTDLXXXTINAFSTENIA 524          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A2E2FP03_9FLAO (CUB domain-containing protein n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E2FP03_9FLAO)

HSP 1 Score: 144 bits (363), Expect = 8.290e-37
Identity = 85/176 (48.30%), Postives = 113/176 (64.20%), Query Frame = 1
Query:    1 FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQG-PQGTFINNYILSGLAPMDADLNIDAVNVIPLSQNITLT----NGADCGIFAGYGILIVWSAADFK-YYKIDIATGTVSDLGVGTLNA-YASENWA 507
            F I S++ T  V+ DHN  +GDDRGGIAVT  YVY+ GD NTAR +AA L N VSLP+RDGIFSDL TG LYTL +S+ G P GT++ ++ +  +  MD DLN+   N I LSQ I +     N +  GI++GYG +IV++      +YKID  TG VS +   +     A+ENW+
Sbjct:  313 FYIQSLTSTGQVV-DHNSLTGDDRGGIAVTDQYVYFNGDNNTARYDAATLANGVSLPRRDGIFSDLSTGDLYTLSNSSNGLPVGTYVTSFTVDEIVVMDTDLNLQ--NSIALSQPIAMGGDYGNTSXAGIYSGYGYVIVYTGTQGNNWYKIDXPTGNVSXINTFSFTLKQANENWS 485          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A3D4CKS1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A3D4CKS1_9FLAO)

HSP 1 Score: 127 bits (320), Expect = 4.490e-31
Identity = 73/159 (45.91%), Postives = 103/159 (64.78%), Query Frame = 1
Query:   43 DHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDS-TQGPQGTFINNYILSGLAPMDADLNIDAVNVIPLSQNITLTNGA-DCGIFAGYGILIVWSAA-DFKYYKIDIATGTVSDLGVGTLNAY-ASENWA 507
            DHN  +GDDRGGIAVT +YVY  GDGN  R + AD+TN + LPQ DGIFSDL  GQLY L D+ T  PQGT+++N  ++ +  +D  LN   ++ + LSQ I +++     G+FAG G +I++S   +  +Y+I + +G V +LG   L    +SENWA
Sbjct:  297 DHNTYTGDDRGGIAVTQNYVYINGDGNMVRYDVADMTNPIVLPQNDGIFSDLFDGQLYALLDTATSYPQGTYLSNDSVNAIVRLDDMLN--PIDTVLLSQQIYISSATYKAGVFAGSGYMILYSGGTNGTFYRIGLPSGNVINLGTYALTGLQSSENWA 453          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A2E4EJ68_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E4EJ68_9FLAO)

HSP 1 Score: 121 bits (303), Expect = 1.080e-28
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   55 SSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQGPQGTFINNYIL---SGLAPMDADLNIDAVNVIPLSQNITLTNGADCGIFAGYGILIVWSAADFKYYKIDIATGTVSDLGVGTLN--AYASENWA 507
            S+GDDRGGIAVTP+Y+YY GD  TAR +  +L  +    +RDGIFSDL +GQLYT W++       + NN IL   + +  M++ L     +VI LSQ+I  TNGA   +FAG G +I+WS  D  +YKID+ +G V++LG   L    Y SE+WA
Sbjct:  537 SAGDDRGGIAVTPNYLYYTGDNYTARYDV-NLNAYSRFTRRDGIFSDLSSGQLYTFWNTQYS--NFYNNNGILGSINSIRTMNSGLAYTG-SVITLSQSINATNGA--AVFAGSGYVILWSGYDRNFYKIDLPSGNVTNLGNYDLRYVRYYSESWA 686          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A1F3IJS6_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1F3IJS6_9BACT)

HSP 1 Score: 114 bits (286), Expect = 1.790e-26
Identity = 63/172 (36.63%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    1 FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANA-ADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQGPQGTFINNYILSGLAPMDADLNIDAVNVIPLSQNITLTNGAD-CGIFAGYGILIVWSAADFKYYKIDIATGTVSDLGVG-TLNAYASENWA 507
            F + S + T  V+ D +   GDDRGGIAVTPD+VY++ D    R N   D          DG+FSDL++G+L +LWD      G     Y ++    +D+++N+  +  + L   IT+  G+D  GI+AGYG  +++S  +  +Y ++ ATG+V+DLG   + + Y +ENWA
Sbjct:  284 FMVTSFADTAAVLVDFDALIGDDRGGIAVTPDHVYFLADDGIGRFNHDLDPATGTFFNLNDGLFSDLKSGKLLSLWDGNSNTNG---GTYYVNSFQSLDSNMNV--IETLTLQTTITMGYGSDYSGIYAGYGFTVLYSGINGHFYVVNNATGSVNDLGDSYSADTYGTENWA 450          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A556MMM6_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Fluviicola chungangensis TaxID=2597671 RepID=A0A556MMM6_9FLAO)

HSP 1 Score: 110 bits (276), Expect = 4.010e-25
Identity = 71/172 (41.28%), Postives = 98/172 (56.98%), Query Frame = 1
Query:    1 FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQG--PQGTFINNYILSGLAPMDADLNIDAVNVIPLSQNITLTNGADCGIFAGYGILIVWSA-ADFKYYKIDIATGTVSDLGVGTLNAYASENWA 507
            + I+S+  T   I DH+  +GDDRGGIAVT +YVY VGD  T R +  DL N + LP RDGIF+DL   +LYTL+ +T    P     + + ++ L  ++ DL+     +I LSQ IT+       I AGY  LIV +A  ++ +Y I I  G V+ +G   L    SENWA
Sbjct:  294 YQINSLDTTNHQIIDHDPITGDDRGGIAVTANYVYIVGDDATGRFDL-DLQNGIDLPIRDGIFTDLAQLKLYTLYSTTSPFVPDSDNFDYFTMNALRSLNEDLSYGN-EIILLSQPITIGTADQALILAGYNELIVGTANGNYDFYHISILNGLVTPMGQHDLEVQGSENWA 463          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: F2IJY0_FLUTR (Por_Secre_tail domain-containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / NCIMB 13979 / RW262) TaxID=755732 RepID=F2IJY0_FLUTR)

HSP 1 Score: 105 bits (263), Expect = 2.240e-23
Identity = 70/174 (40.23%), Postives = 102/174 (58.62%), Query Frame = 1
Query:    1 FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDST--QGPQGTFINN-YILSGLAPMDADLNIDAVNVIPLSQNITLTNGADCG-IFAGYGILIVWSA-ADFKYYKIDIATGTVSDLGVGTLNAYASENWA 507
            + I+S+  +   I DH   S DDRGGIAVT +YVY VGD  TAR +  DL N V LP+RDGIF+DL   +LYTL+++     P     +  + ++ L  ++ DL+  +  +I L+Q +T+    D G I  G+  LI+ +A  ++ +Y I I  G V+ +G   LN Y SENWA
Sbjct:  293 YQINSLDTSNHQIVDHEVLSDDDRGGIAVTANYVYVVGDEATARYDL-DLQNGVELPRRDGIFTDLAQLKLYTLYNTVAPHTPNDDLDDEGFTVNALRSLNEDLSYGS-EIILLTQPVTIATDGDQGVILTGHNELILGTAYGNYDFYHISILNGLVTPMGQHELNVYGSENWA 464          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A084SIV1_9DELT (Uncharacterized protein n=2 Tax=Archangium violaceum TaxID=83451 RepID=A0A084SIV1_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-20
Identity = 65/166 (39.16%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   31 TVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQ-RDGIFSDLQTGQLYTLWDSTQGPQGTFINNYI-----LSGLAPMDADLNIDAVNVIPLSQNITLTNGADCGIFAGYGILIVWSAADFKYYKIDIATGTVSDLGVGTLN-AYASENWA 507
            TV+ DHN ++GDDRGGIAVT ++V+Y GD    R N  DL+    +    D IFS+L  G L+ LWD+T   +   IN+Y      L  L    AD  +     + LS  ITL NG+   +FA +  L++++ + F  Y +++ TG V+ LG  TL+ A   ENWA
Sbjct:  192 TVVMDHNAATGDDRGGIAVTGNHVFYNGDSGLGRFNINDLSGGTRVGAVHDSIFSNLANGMLWVLWDNTTRQE---INHYPSQATHLRQLTDNGADTGL----FVLLSSPITLGNGS--ALFASWNKLVIYNGSAF--YAVNLQTGHVTSLGTRTLSSATRCENWA 346          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: A0A2D5QRJ8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2D5QRJ8_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-19
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    1 FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLPQRDGIFSDLQTGQLYTLWDSTQGPQGTFINNYILSGLAPMDADLNIDAVNV-IPLSQNITLTNGADCGIFAGYGILIVWSAADFKYYKIDIATGTVSDLGVGTLNAYASENWA 507
            F ++S++ T+    DHNG +GDDRGGIA   +++YY GD NT + N A   N  ++ QRDG+ S+L T ++Y L     G  G+ ++   ++    +  D N+   NV I LSQ IT    ++ GIF GYG +I +   +  Y+ ++ +TG V        N    ENWA
Sbjct:  130 FFVESMT-TVCSTYDHNGLTGDDRGGIAYGNNHLYYTGDNNTLKINTA-FNNQTNVNQRDGLLSNLLTEEVYHL-----GRDGSLVSGNSITFNQFIKLDENLSPTNVVINLSQAITTGGNSNNGIFPGYGEVIFFF--NNSYHAVNFSTGAVESFPGSINNPQTCENWA 290          
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Match: UPI0019DD879E (T9SS type A sorting domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI0019DD879E)

HSP 1 Score: 83.2 bits (204), Expect = 1.960e-15
Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 1
Query:    1 FTIDSIS--GTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADLTNWVSLP-QRDGIFSDLQTGQLYTLW-----------------DSTQGPQGTFINNYILSGLAPMDADLNIDAVNVIPL--------------SQNITLTNGADCGIFAGYGILIVWS 408
            + ID +S  G+ T   D   ++GD RGGIAVT DY+Y  GD NT R NA+DL+   S+  +RDG+FSDL TG+LYTLW                 D+  G   + +  + ++ L  M+ DL++ +  +IPL               QN T       GI+ GYG + +++
Sbjct:  401 YVIDGLSADGSSTT-GDITSTAGDYRGGIAVTKDYLYVTGDDNTVRMNASDLSGITSMGLKRDGMFSDLLTGKLYTLWGNSVINGEGTVPICPCADNNTGSGNSCVEEFTVTSLREMNEDLSLSST-IIPLIDENGNSTRFVCKGGQNSTWVTRT--GIYPGYGFVCIFA 566          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120476.4227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI001C8E93594.130e-4549.11T9SS type A sorting domain-containing protein n=1 ... [more]
A0A2E2FP03_9FLAO8.290e-3748.30CUB domain-containing protein n=1 Tax=Crocinitomic... [more]
A0A3D4CKS1_9FLAO4.490e-3145.91Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A2E4EJ68_9FLAO1.080e-2846.79Por_Secre_tail domain-containing protein n=1 Tax=C... [more]
A0A1F3IJS6_9BACT1.790e-2636.63Por_Secre_tail domain-containing protein n=2 Tax=B... [more]
A0A556MMM6_9FLAO4.010e-2541.28T9SS type A sorting domain-containing protein n=1 ... [more]
F2IJY0_FLUTR2.240e-2340.23Por_Secre_tail domain-containing protein n=1 Tax=F... [more]
A0A084SIV1_9DELT2.840e-2039.16Uncharacterized protein n=2 Tax=Archangium violace... [more]
A0A2D5QRJ8_9DELT2.430e-1935.88Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
UPI0019DD879E1.960e-1534.71T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120476contigM-pyrifera_M_contig120476:5..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.5721602-CDS-M-pyrifera_M_contig120476:4..5111622815724.5721602-CDS-M-pyrifera_M_contig120476:4..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120476 5..511 -
1692277539.4716387-CDS-M-pyrifera_M_contig120476:4..5111692277539.4716387-CDS-M-pyrifera_M_contig120476:4..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120476 5..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120476.4227.1prot_M-pyrifera_M_contig120476.4227.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120476 5..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120476.4227.1

>prot_M-pyrifera_M_contig120476.4227.1 ID=prot_M-pyrifera_M_contig120476.4227.1|Name=mRNA_M-pyrifera_M_contig120476.4227.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
FTIDSISGTITVISDHNGSSGDDRGGIAVTPDYVYYVGDGNTARANAADL
TNWVSLPQRDGIFSDLQTGQLYTLWDSTQGPQGTFINNYILSGLAPMDAD
LNIDAVNVIPLSQNITLTNGADCGIFAGYGILIVWSAADFKYYKIDIATG
TVSDLGVGTLNAYASENWA
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mRNA from alignment at M-pyrifera_M_contig120476:5..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120476.4227.1 ID=mRNA_M-pyrifera_M_contig120476.4227.1|Name=mRNA_M-pyrifera_M_contig120476.4227.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig120476:5..511- (Macrocystis pyrifera P11B4 male)
TTCACAATTGATTCCATTTCAGGAACGATCACTGTGATTTCTGACCACAA TGGTTCTTCTGGTGACGATCGCGGTGGTATTGCTGTAACTCCTGACTACG TTTACTATGTAGGTGATGGAAATACAGCACGAGCCAATGCAGCTGACCTT ACCAACTGGGTTTCATTGCCACAGCGTGATGGTATTTTCTCAGACCTTCA AACAGGACAGCTTTACACTCTTTGGGATAGCACACAGGGGCCACAAGGAA CCTTCATCAATAACTACATCCTATCAGGATTGGCACCGATGGATGCTGAT TTGAACATTGATGCGGTTAACGTGATTCCACTTTCTCAGAACATCACACT CACCAATGGAGCTGACTGCGGAATATTTGCTGGCTACGGAATCCTGATCG TGTGGAGCGCTGCTGATTTCAAGTATTACAAAATCGACATCGCTACAGGA ACTGTTTCTGACCTAGGTGTAGGAACACTGAACGCATATGCTTCTGAGAA CTGGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120476:5..511-

>mRNA_M-pyrifera_M_contig120476.4227.1 ID=mRNA_M-pyrifera_M_contig120476.4227.1|Name=mRNA_M-pyrifera_M_contig120476.4227.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig120476:5..511- (Macrocystis pyrifera P11B4 male)
TTCACAATTGATTCCATTTCAGGAACGATCACTGTGATTTCTGACCACAA
TGGTTCTTCTGGTGACGATCGCGGTGGTATTGCTGTAACTCCTGACTACG
TTTACTATGTAGGTGATGGAAATACAGCACGAGCCAATGCAGCTGACCTT
ACCAACTGGGTTTCATTGCCACAGCGTGATGGTATTTTCTCAGACCTTCA
AACAGGACAGCTTTACACTCTTTGGGATAGCACACAGGGGCCACAAGGAA
CCTTCATCAATAACTACATCCTATCAGGATTGGCACCGATGGATGCTGAT
TTGAACATTGATGCGGTTAACGTGATTCCACTTTCTCAGAACATCACACT
CACCAATGGAGCTGACTGCGGAATATTTGCTGGCTACGGAATCCTGATCG
TGTGGAGCGCTGCTGATTTCAAGTATTACAAAATCGACATCGCTACAGGA
ACTGTTTCTGACCTAGGTGTAGGAACACTGAACGCATATGCTTCTGAGAA
CTGGGCTTTCACAATTGATTCCATTTCAGGAACGATCACTGTGATTTCTG
ACCACAATGGTTCTTCTGGTGACGATCGCGGTGGTATTGCTGTAACTCCT
GACTACGTTTACTATGTAGGTGATGGAAATACAGCACGAGCCAATGCAGC
TGACCTTACCAACTGGGTTTCATTGCCACAGCGTGATGGTATTTTCTCAG
ACCTTCAAACAGGACAGCTTTACACTCTTTGGGATAGCACACAGGGGCCA
CAAGGAACCTTCATCAATAACTACATCCTATCAGGATTGGCACCGATGGA
TGCTGATTTGAACATTGATGCGGTTAACGTGATTCCACTTTCTCAGAACA
TCACACTCACCAATGGAGCTGACTGCGGAATATTTGCTGGCTACGGAATC
CTGATCGTGTGGAGCGCTGCTGATTTCAAGTATTACAAAATCGACATCGC
TACAGGAACTGTTTCTGACCTAGGTGTAGGAACACTGAACGCATATGCTT
CTGAGAACTGGGCT
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