mRNA_M-pyrifera_M_contig120460.4224.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120460.4224.1
Unique NamemRNA_M-pyrifera_M_contig120460.4224.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Match: A0A517PHX8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PHX8_9PLAN)

HSP 1 Score: 276 bits (705), Expect = 4.580e-92
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:    1 NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH 426
            NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH
Sbjct:  114 NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH 255
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BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Match: A0A518FPX8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPX8_9PLAN)

HSP 1 Score: 234 bits (597), Expect = 7.560e-75
Identity = 124/142 (87.32%), Postives = 130/142 (91.55%), Query Frame = 1 
Query:    1 NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH 426
            NEDAMIM LG M+S NR GELI+ALLDKINQKQKTYY+ S RYKLFCREQRPAYHAL  MGPNV HATLRKIGQE EKENRYYMAKLL QVLRKKFALLYLED+QEQV A+DKLTAAQKTEALARYSEAIAAVKEM+DRVRH
Sbjct:  173 NEDAMIMFLGDMYSINRTGELIDALLDKINQKQKTYYYASNRYKLFCREQRPAYHALSRMGPNVAHATLRKIGQEPEKENRYYMAKLLCQVLRKKFALLYLEDRQEQVTADDKLTAAQKTEALARYSEAIAAVKEMKDRVRH 314
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BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Match: A0A518A167_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A167_9PLAN)

HSP 1 Score: 221 bits (563), Expect = 1.740e-70
Identity = 118/142 (83.10%), Postives = 126/142 (88.73%), Query Frame = 1 
Query:    1 NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH 426
            NEDAMIM LG M+S NR GELI+ALLDKINQKQKTYY+ S RYKLFCREQRPAY AL  MGPN+ HATLRKI QE EKENRYYMAKLL  VLRKKFALLYLED+QEQVA +DKLTA +KTEALARYSEAIAAVKEM+DRVRH
Sbjct:  114 NEDAMIMFLGDMNSINRTGELIDALLDKINQKQKTYYYVSNRYKLFCREQRPAYDALSRMGPNIAHATLRKIAQEPEKENRYYMAKLLCLVLRKKFALLYLEDRQEQVAEDDKLTAKEKTEALARYSEAIAAVKEMKDRVRH 255
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BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Match: A0A6I6ADC0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ADC0_9PLAN)

HSP 1 Score: 220 bits (561), Expect = 3.510e-70
Identity = 117/142 (82.39%), Postives = 124/142 (87.32%), Query Frame = 1 
Query:    1 NEDAMIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAYHALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQQEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH 426
            NEDAMI+ LGYMHS +R G L   LLDKINQKQKTYY+ S RYKLFCREQRPAY AL  MGPNVVHATLR IGQE +KENRYYMAKLL  VLRKKFALLYLED+QEQV A+DKLTA+QKTEALARY EAIAAVKEMEDRVRH
Sbjct:  114 NEDAMIVFLGYMHSTHRTGLLTNTLLDKINQKQKTYYYASNRYKLFCREQRPAYDALSRMGPNVVHATLRIIGQEPDKENRYYMAKLLCLVLRKKFALLYLEDRQEQVTADDKLTASQKTEALARYGEAIAAVKEMEDRVRH 255
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BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Match: A0A518FQ54_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FQ54_9PLAN)

HSP 1 Score: 89.7 bits (221), Expect = 1.520e-20
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = -1 
Query:  268 SVAYSVFHLFHRRNRFAVAGQCFRFLCGRELIIRSHLFLLVFQIE*RKLFAQNL 429
            SV YSV HLFH RN FAVAGQCF FLCGREL+IRS+L L VFQIE RKLFAQNL
Sbjct:   56 SVTYSVLHLFHCRNGFAVAGQCFCFLCGRELVIRSYLLLSVFQIEQRKLFAQNL 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120460.4224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A517PHX8_9PLAN4.580e-92100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518FPX8_9PLAN7.560e-7587.32Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518A167_9PLAN1.740e-7083.10Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A6I6ADC0_9PLAN3.510e-7082.39Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A518FQ54_9PLAN1.520e-2081.48Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120460contigM-pyrifera_M_contig120460:31..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.458335-CDS-M-pyrifera_M_contig120460:30..4471622815724.458335-CDS-M-pyrifera_M_contig120460:30..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120460 31..447 -
1692277539.4247606-CDS-M-pyrifera_M_contig120460:30..4471692277539.4247606-CDS-M-pyrifera_M_contig120460:30..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120460 31..447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.4701922-UTR-M-pyrifera_M_contig120460:447..4591622815724.4701922-UTR-M-pyrifera_M_contig120460:447..459Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120460 448..459 -
1692277539.4353247-UTR-M-pyrifera_M_contig120460:447..4591692277539.4353247-UTR-M-pyrifera_M_contig120460:447..459Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120460 448..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120460.4224.1prot_M-pyrifera_M_contig120460.4224.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120460 31..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120460.4224.1

>prot_M-pyrifera_M_contig120460.4224.1 ID=prot_M-pyrifera_M_contig120460.4224.1|Name=mRNA_M-pyrifera_M_contig120460.4224.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MIMLLGYMHSGNRIGELIEALLDKINQKQKTYYFPSKRYKLFCREQRPAY
HALCYMGPNVVHATLRKIGQEQEKENRYYMAKLLFQVLRKKFALLYLEDQ
QEQVAANDKLTAAQKTEALARYSEAIAAVKEMEDRVRH*
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mRNA from alignment at M-pyrifera_M_contig120460:31..459-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120460.4224.1 ID=mRNA_M-pyrifera_M_contig120460.4224.1|Name=mRNA_M-pyrifera_M_contig120460.4224.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig120460:31..459- (Macrocystis pyrifera P11B4 male)
AATGAAGATGCGATGATTATGCTTCTCGGGTATATGCATTCAGGAAATAG
AATCGGAGAATTGATCGAAGCACTGCTGGATAAAATCAACCAGAAACAAA
AAACCTATTATTTTCCTTCAAAGAGATACAAACTGTTCTGTCGTGAACAA
CGCCCGGCCTATCATGCCCTCTGCTATATGGGGCCCAATGTAGTCCATGC
CACTTTAAGAAAAATTGGCCAGGAACAGGAGAAAGAAAACCGCTACTACA
TGGCCAAGTTACTATTCCAGGTTTTGCGCAAAAAGTTTGCGTTACTCTAT
CTGGAAGACCAACAGGAACAGGTGGCTGCGAATGATAAGCTCACGGCCGC
ACAGAAAACGGAAGCACTGGCCCGCTACAGCGAAGCGATTGCGGCGGTGA
AAGAGATGGAAGACAGAGTACGCCACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120460:31..459-

>mRNA_M-pyrifera_M_contig120460.4224.1 ID=mRNA_M-pyrifera_M_contig120460.4224.1|Name=mRNA_M-pyrifera_M_contig120460.4224.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig120460:31..459- (Macrocystis pyrifera P11B4 male)
ATGATTATGCTTCTCGGGTATATGCATTCAGGAAATAGAATCGGAGAATT
GATCGAAGCACTGCTGGATAAAATCAACCAGAAACAAAAAACCTATTATT
TTCCTTCAAAGAGATACAAACTGTTCTGTCGTGAACAACGCCCGGCCTAT
CATGCCCTCTGCTATATGGGGCCCAATGTAGTCCATGCCACTTTAAGAAA
AATTGGCCAGGAACAGGAGAAAGAAAACCGCTACTACATGGCCAAGTTAC
TATTCCAGGTTTTGCGCAAAAAGTTTGCGTTACTCTATCTGGAAGACCAA
CAGGAACAGGTGGCTGCGAATGATAAGCTCACGGCCGCACAGAAAACGGA
AGCACTGGCCCGCTACAGCGAAGCGATTGCGGCGGTGAAAGAGATGGAAG
ACAGAGTACGCCACTGAATGATTATGCTTCTCGGGTATATGCATTCAGGA
AATAGAATCGGAGAATTGATCGAAGCACTGCTGGATAAAATCAACCAGAA
ACAAAAAACCTATTATTTTCCTTCAAAGAGATACAAACTGTTCTGTCGTG
AACAACGCCCGGCCTATCATGCCCTCTGCTATATGGGGCCCAATGTAGTC
CATGCCACTTTAAGAAAAATTGGCCAGGAACAGGAGAAAGAAAACCGCTA
CTACATGGCCAAGTTACTATTCCAGGTTTTGCGCAAAAAGTTTGCGTTAC
TCTATCTGGAAGACCAACAGGAACAGGTGGCTGCGAATGATAAGCTCACG
GCCGCACAGAAAACGGAAGCACTGGCCCGCTACAGCGAAGCGATTGCGGC
GGTGAAAGAGATGGAAGACAGAGTACGCCACTGA
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