mRNA_M-pyrifera_M_contig12046.4223.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12046.4223.1
Unique NamemRNA_M-pyrifera_M_contig12046.4223.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12046.4223.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.180e-67
Identity = 97/113 (85.84%), Postives = 103/113 (91.15%), Query Frame = 1 
Query:    1 GRLQPTLVRRKPHPEVSFAKGGSDFRCPRTFSCFGPQALSREVYRTAGTPAFARQDRWYAPGDKFKVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRAGASKMYALWSVGQQR 339
            GRLQPT+VR+KP PEVSF KGGSDFRCPRTFSC G QALSR+VYR+AG P F RQDRWY PGDKF+VHGGTPISSLGNQPTSTRTSAGRAHFGTSTR+ A KMYALWSVGQQR
Sbjct:    2 GRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQR 114
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BLAST of mRNA_M-pyrifera_M_contig12046.4223.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 2.040e-65
Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:    1 GRLQPTLVRRKPHPEVSFAKGGSDFRCPRTFSCFGPQALSREVYRTAGTPAFARQDRWYAPGDKFKVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRAGASKMYALWSVGQQR 339
            GR QPT+VR+KP PEVSF KGGSDFRCPRTFSC G QALSR+VYR+AG P F RQDRW+ PGDKF+ HGGTPISSLGNQPTSTRTSAGRAHFGTSTR+ A KMYALWSVGQQR
Sbjct:   31 GRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQQR 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12046.4223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S5_ECTSI1.180e-6785.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L3_9PHAE2.040e-6583.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12046contigM-pyrifera_M_contig12046:2224..5229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004330.1
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.3995233-CDS-M-pyrifera_M_contig12046:2223..23661622815724.3995233-CDS-M-pyrifera_M_contig12046:2223..2366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12046 2224..2366 -
1692277539.4028056-CDS-M-pyrifera_M_contig12046:2223..23661692277539.4028056-CDS-M-pyrifera_M_contig12046:2223..2366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12046 2224..2366 -
1622815724.4184096-CDS-M-pyrifera_M_contig12046:5030..52291622815724.4184096-CDS-M-pyrifera_M_contig12046:5030..5229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12046 5031..5229 -
1692277539.414359-CDS-M-pyrifera_M_contig12046:5030..52291692277539.414359-CDS-M-pyrifera_M_contig12046:5030..5229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12046 5031..5229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12046.4223.1prot_M-pyrifera_M_contig12046.4223.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12046 2224..5229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12046.4223.1

>prot_M-pyrifera_M_contig12046.4223.1 ID=prot_M-pyrifera_M_contig12046.4223.1|Name=mRNA_M-pyrifera_M_contig12046.4223.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GRLQPTLVRRKPHPEVSFAKGGSDFRCPRTFSCFGPQALSREVYRTAGTP
AFARQDRWYAPGDKFKVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRAGA
SKMYALWSVGQQR*
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mRNA from alignment at M-pyrifera_M_contig12046:2224..5229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12046.4223.1 ID=mRNA_M-pyrifera_M_contig12046.4223.1|Name=mRNA_M-pyrifera_M_contig12046.4223.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3006bp|location=Sequence derived from alignment at M-pyrifera_M_contig12046:2224..5229- (Macrocystis pyrifera P11B4 male)
GGCCGGTTGCAGCCGACGTTGGTCCGCCGAAAGCCCCACCCCGAGGTGTC
TTTCGCTAAGGGCGGCAGCGACTTCCGGTGTCCGAGGACGTTCAGCTGCT
TCGGGCCGCAGGCCCTGTCGAGAGAAGTCTACCGCACTGCCGGCACGCCC
GCGTTCGCCCGGCAGGACAGGTGGTACGCCCCCGGCGACAAATTCAAAGG
TGAGCCCGACACGCCGTGCCACGGCAGGCAAGGCGTGGGATGGCGCCGGT
GGATTCCGAGGGCTCCTCGGCGCATGCTACAGTAGGGCTCCCCCCTATAT
GTGCAGGAGCGGGCTGGACAAAACTGTGTGCTGGACGTGTGTCGTCAATT
TCAACCTTGTACGTCGGCCCAGACCAACCCGACCCCAGGCCTGACCCTAA
CCATGACCCTAACCCTGACCTGACCCTTTGGAGGGTTCGAGGTCGGCAGG
GGCAGTCACGCGGCTCCGCCCCGTGTATGGGAGGCGTTTTTCTCAAAGAA
CGCCGGGCCGCCGAAAGACCCACCTTGACCAATAAGATCCGCATCCTGCA
CAAAGTTTCGTGCGGGCCGCTCCGGCACACAGGTCGAGACTAGTATCAGC
ATTTTCGAGTTTCGCCGCACAGAGACAGTTGAGTTATATATACATAATAT
TGTACATTTAAAAAAAACAATGATAATAATCATTATGAAAAAGTTGTTTC
CGGGGTTTCTGCGCTAGGCTCCCCCTTCATCCTTCCGCTCGCTCTTCTTG
TCGCCGCATCCTGTGCGTCCAGCCTGGCAGGGGCGACCATTGCGTCGAGG
CGTTTTCGCTGTCACGGGCGCAAACAGAGGCAAGCCAAGCGAGAACGAGA
CCTAAAGAAGAAACTCCAAACTTATTTGCTGTGATGCTCATCGTTGCTGT
CTCGTGCCTCGTGTCTCGTGTCTCCTGTCGCATGCGTCCACGATTGATTG
CATGATGTCAATGCAGCAGCGGTAGCTCCGTGAATATATCGGGAATCTGC
TGCTGCTGCTGCTGTGTGTGTACGTGTCGGCCGGCCCAGTTTGTTGTGCG
TGTGTTTTCAGTGGTCTGGTACAGCACGCGGCCTCTGATGTGAAAGCTGC
GGGCTGGTTTTGCTTTTCGTCGGCGAGTCCTTCTTTGCATCCTTTTTTTT
GTGGTTTTAGAAAGGATAAAGTGCCGGCCTTTACCAGGTGACGATCGAAC
CCGTTTGGCACGGAGTGCTGAATTGTGATGCTTAGATCAGTTCTTACCCA
GTCGGACACATGGATTGAAACGGCCGGATTCTGATCGGAGACAAAAAATG
GCTTTCTCACGCAGTTGAAAAAGGGGGCCTCTTCAATCCAAGTTTTTTCG
ATTTTATTTTTTTCCAACTGGACCAGACAGTCTAGAAAACTGAGATTTTG
GATCCGACGCGCCACAGCAGTCGGATTCATGATTCGGAAATGTTTGAAAG
GCCCGCCATATACTCGTACAAGCATCGCACACCCACACAATAGCACGACA
TATTACATACGACACGACCCCATACCACAACATCGACGACGCTGGCGGGC
ACAGTATGTTTCTGCGGCCTCGGTCCCATTTGAGGCGATTTTTCATTAAC
CAAAAAGTCAGGTTAAGCGCGATGCACACTCCCATGGGCTACGAGTATTG
TGTTGTGGTACCTCAAACTAAATGTTTTTTTTAGTGCGGTATGCGTCGGA
TGCACGGACGGTATTGGGTACATTATGTAGGTATCTCGAAATTAATGTTT
TCAATCATGGCATGCATCGGACCCACCAACGTTGTGGGGTATACATGGGT
ACTTTGGGTATGTTGGGTACCTTGGGTACATTGGGTACGCTGGGTATTTG
GGGTATATCAGGTACATTGGGTATATTGGGTACATTGGGTATATGGGGTA
CTTTGGGTACATTGGGTATATAGGGGACATTGGGTACATTGGGTATGTTG
GGTACATTGGGTACATTGGGTACACTGGGTATTTTGGGTATATCAGGTAT
ATTGGGCATATTGGGTACTTTGGGTACATTGGGTATATAGGGGGCATTGG
GTACACTGGGTATATTGGGTACCTTGGGTACATTGGGTATTTTGGGTATA
TTGGGTATATCAGTATGTTGGGTATATTGAGTACATTGGGTGTACTGGGC
ATATTGGGCATATTGGGTATATTGGGTATATCGGGTATATTAGGTAGGTA
GCTCCTCGGTGGAGGAGGCGGGCTCCATCGGTAAGAACTGTTTCAAAGAT
CATCGGACAGATCAGACAGATCATTCCCACTTGGTAATTCAAATATTTCC
AGGGCAGATGGCGTTCCGGCCTCGATCTTTGATCTACAGGAACGTTTTAT
TGCCGGGTAGGATCTACATAGGGCATGTTTCCGGAGTTGGATCTGTACTA
CCGTACTGTTTATACAGACAGATCCTGTACAACATCTACATCTCGGAACT
TAGGGCTAGGGTTAGATTATCTAGATTATCTAGATGATCTAGATGATCTA
CAGTACATGGTGATCTACCTGTCGTCCGACGTGTGAAATGTTTGTTGGCC
TCAAAACCCCTCTATCGTACGTACGACGGGTCACAAGGGCCGCACACCCC
TCGTAAGGGCACGTCCCTGACCCTACAGCATAAAAAAACGCCTTCATGTA
CAACGGCAGCGCCCGACAAAAGCACCACTGATGCACCTTTTCTTTCCGCT
GCTGCTTCTTCTTTTGTTTTCGTTTTCGTTTTCTTTTTGTTTTTATTTTC
TTCTCTTCTTCTTCTTTTCCTTTCTTTTCTTTCCTTTTTATCTTATTTCC
TCTTTTCGTTACTTTTCTTTGCTTCTTTTTTTTTTTTGTATCGTCCCCGC
CGGCGTTTGTTAGTTCACGGGGGAACGCCGATCTCGTCGCTGGGAAACCA
GCCCACGTCCACCCGCACGTCGGCAGGGCGGGCGCACTTCGGAACCTCTA
CGCGCGCCGGCGCCAGCAAGATGTACGCGCTGTGGTCCGTCGGACAGCAG
CGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12046:2224..5229-

>mRNA_M-pyrifera_M_contig12046.4223.1 ID=mRNA_M-pyrifera_M_contig12046.4223.1|Name=mRNA_M-pyrifera_M_contig12046.4223.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig12046:2224..5229- (Macrocystis pyrifera P11B4 male)
GGCCGGTTGCAGCCGACGTTGGTCCGCCGAAAGCCCCACCCCGAGGTGTC
TTTCGCTAAGGGCGGCAGCGACTTCCGGTGTCCGAGGACGTTCAGCTGCT
TCGGGCCGCAGGCCCTGTCGAGAGAAGTCTACCGCACTGCCGGCACGCCC
GCGTTCGCCCGGCAGGACAGGTGGTACGCCCCCGGCGACAAATTCAAAGG
GCCGGTTGCAGCCGACGTTGGTCCGCCGAAAGCCCCACCCCGAGGTGTCT
TTCGCTAAGGGCGGCAGCGACTTCCGGTGTCCGAGGACGTTCAGCTGCTT
CGGGCCGCAGGCCCTGTCGAGAGAAGTCTACCGCACTGCCGGCACGCCCG
CGTTCGCCCGGCAGGACAGGTGGTACGCCCCCGGCGACAAATTCAAAGTT
CACGGGGGAACGCCGATCTCGTCGCTGGGAAACCAGCCCACGTCCACCCG
CACGTCGGCAGGGCGGGCGCACTTCGGAACCTCTACGCGCGCCGGCGCCA
GCAAGATGTACGCGCTGTGGTCCGTCGGACAGCAGCGGTAATTCACGGGG
GAACGCCGATCTCGTCGCTGGGAAACCAGCCCACGTCCACCCGCACGTCG
GCAGGGCGGGCGCACTTCGGAACCTCTACGCGCGCCGGCGCCAGCAAGAT
GTACGCGCTGTGGTCCGTCGGACAGCAGCGGTAA
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