mRNA_M-pyrifera_M_contig120449.4218.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120449.4218.1
Unique NamemRNA_M-pyrifera_M_contig120449.4218.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A7X4BIH0_9BACT (Three-Cys-motif partner protein TcmP n=1 Tax=Nitrospira sp. SB0662_bin_26 TaxID=2604886 RepID=A0A7X4BIH0_9BACT)

HSP 1 Score: 110 bits (276), Expect = 2.920e-27
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFADTATLNTWWGDDGWGAIQNLNQSQAASLMADK-IRGLGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIELFYF  +S + R++    +T+ L +WWG   WG + N+     A +   + +  LGY+ V  WPI +RE G GR MY+MIHATDH EAPRLM+RAY + VA  E   Q+ L
Sbjct:  170 KIELFYFLPSSWLDRALAAQQNTSVLESWWGGPDWGQLHNVKGDARAEIFRKRFVDELGYKHVHYWPIYERESGDGRVMYYMIHATDHHEAPRLMHRAYNQAVARIEPINQLPL 283          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: UPI0013DE9A75 (three-Cys-motif partner protein TcmP n=2 Tax=unclassified Rhodopseudomonas TaxID=2638247 RepID=UPI0013DE9A75)

HSP 1 Score: 110 bits (275), Expect = 4.450e-27
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFA-DTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAP----AEVQQQM 333
            KIELFYF  T  + R+I G   +   +  WWG D W  +  +     A L AD+ +  LGY+   AWPI  +E G  R MYHMIHA+DHDEAP+LM RAYRK   P    AEVQQ+M
Sbjct:  164 KIELFYFLATGWLERAIAGTTRNMQNIRKWWGRDDWAVLATMRSFDRALLFADRFKEELGYKHAHAWPIYNKEAGAKRVMYHMIHASDHDEAPKLMSRAYRKANQPKEDLAEVQQEM 280          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A6P2NZ42_9BURK (Uncharacterized protein n=1 Tax=Burkholderia pseudomultivorans TaxID=1207504 RepID=A0A6P2NZ42_9BURK)

HSP 1 Score: 110 bits (274), Expect = 7.710e-27
Identity = 54/116 (46.55%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFADT--ATLNTWWGDDGWGAIQNLNQSQAASLMADK-IRGLGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIELFYF     IHR++ G  D   A +  WWG D W  ++ ++Q     LM D+ +  LGY+   AWPI QR    G  MY+MIHATD+D+AP+LMYRAYR+ VA     +Q+ L
Sbjct:  181 KIELFYFLAVKWIHRALGGTGDAGAADVKAWWGRDDWPNLKGVSQDTLRDLMRDRFLTELGYKYAYAWPIYQRSGANGAVMYYMIHATDNDDAPKLMYRAYRRAVADVPPYEQLNL 296          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: UPI00140ADC31 (three-Cys-motif partner protein TcmP n=1 Tax=Rhizobium flavescens TaxID=2607407 RepID=UPI00140ADC31)

HSP 1 Score: 108 bits (270), Expect = 2.390e-26
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGF-ADTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIE FYF  T  + RS+ GF       + WWG++GW  ++ L+    A  MA++ R  LGYR V+ WPI QREKG+GR M+HMIHA+DH EA +LM RAY+ ++   E + Q+ L
Sbjct:  167 KIEQFYFLATGWLGRSLSGFKVGNPIPDRWWGNNGWSQLRGLSGDLIAVRMAERFRDELGYRYVRPWPIYQREKGKGRVMFHMIHASDHPEAHKLMKRAYKHVLDVPESEDQLDL 281          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A0E1TQB8_BURPE (Uncharacterized protein n=10 Tax=Burkholderia TaxID=32008 RepID=A0A0E1TQB8_BURPE)

HSP 1 Score: 108 bits (269), Expect = 4.520e-26
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFA-DTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMT 336
            KIELFYF     +HRS  G   DT     WWG D W  ++ L+Q    + M  ++R   GYR   AWPI +R+  +G  MY+MIHATDH++ P+LM+RAYR+ VA     QQ++
Sbjct:  184 KIELFYFLAVKWLHRSFSGLTVDTQKAQKWWGSDDWVDLKKLSQVDITTRMQQRLRNEFGYRYAHAWPIWERDSAEGSVMYYMIHATDHEDGPKLMWRAYRQAVADIPRGQQLS 297          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: UPI00164100D1 (three-Cys-motif partner protein TcmP n=1 Tax=Burkholderia gladioli TaxID=28095 RepID=UPI00164100D1)

HSP 1 Score: 106 bits (264), Expect = 2.370e-25
Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFA-DTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVA 309
            KIELFYF     +HRS  G   DT     WWG   W  ++ L+Q      M  + R  LGYR   AWPI +R+  +G  MY+MIHATDHD AP+LM+RAYR+ VA
Sbjct:  184 KIELFYFLAVKWLHRSFSGLTVDTKKATRWWGSSEWVDLKKLSQVDITECMQQRFRKELGYRYAHAWPIWERDSAEGSVMYYMIHATDHDVAPKLMWRAYRQAVA 288          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A1H6GL56_9HYPH (Three-Cys-motif partner protein n=1 Tax=Rhizobium sp. NFR12 TaxID=1566261 RepID=A0A1H6GL56_9HYPH)

HSP 1 Score: 105 bits (261), Expect = 5.190e-25
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGF-ADTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIE FYF  T  + RS+ GF +     + WWG   W  +Q L+    A  MA++ R  LGYR V+ WPI +REKG+GR M+HMIHA+DH EA +LM RAY+ ++   E ++Q+ L
Sbjct:  167 KIEQFYFLATGWLGRSLAGFKSGNPVPDNWWGSSDWLELQGLSGDLIAIKMAERFRDELGYRFVRPWPIYKREKGKGRIMFHMIHASDHPEAHKLMKRAYKHVLDVPESEEQLNL 281          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A068T8B8_NEOGA (Uncharacterized protein n=2 Tax=Neorhizobium galegae TaxID=399 RepID=A0A068T8B8_NEOGA)

HSP 1 Score: 104 bits (260), Expect = 5.700e-25
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGF-ADTATLNTWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIE FYF  T  + R++ GF +D    + WWG   W  ++ L     A  MA++ R  LGYR V+ WPI +REKG+GR M+HMIHA+DH EA +LM RAY+ ++   E ++Q+ L
Sbjct:  154 KIEQFYFLATGWLGRALSGFKSDNPMPDNWWGSSDWLKLKGLGGDLIAIKMAERFRDELGYRFVRPWPIYKREKGKGRVMFHMIHASDHPEAHKLMKRAYKHVLDVPESEEQLKL 268          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: A0A439VND7_9HYPH (Three-Cys-motif partner protein TcmP n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A439VND7_9HYPH)

HSP 1 Score: 104 bits (259), Expect = 1.060e-24
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFADTATL-NTWWGDDGWGAIQNLNQSQAASLMADK-IRGLGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIELFYF  T  ++R+++GF+    +   WWG   W ++Q L+  + A    D+ I  LGYR V  WPI++R++G+GR M++MIHA+DH EAP+LM RAY  +    E + Q+ +
Sbjct:  173 KIELFYFLATGWLNRALRGFSRNPHIPERWWGRPDWASLQGLSGHKTAEQFRDRFINELGYRYVTPWPISKRDRGRGRVMFYMIHASDHPEAPQLMDRAYHNVTNRLEPEDQLKM 287          
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Match: UPI000FD91F19 (three-Cys-motif partner protein TcmP n=1 Tax=Sinorhizobium medicae TaxID=110321 RepID=UPI000FD91F19)

HSP 1 Score: 103 bits (257), Expect = 2.010e-24
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 KIELFYFFGTSGIHRSIKGFADTATLN---TWWGDDGWGAIQNLNQSQAASLMADKIRG-LGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRKLVAPAEVQQQMTL 339
            KIE+FYF  T  +HRS+ G   T  L+    WWG DGW  + + +  + A  MA++ R  LGYR VK +PI +REKG G+ M+HMIHA+DH EA +LM RA+R +    E  +Q+ +
Sbjct:  168 KIEIFYFLATGWLHRSLNGH--TVNLDRPDVWWGGDGWKELLSASGEKIAIRMAERFRDELGYRFVKPYPIYEREKGGGKVMFHMIHASDHPEASKLMARAHRNVTLAPEPLEQLEM 282          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120449.4218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X4BIH0_9BACT2.920e-2746.49Three-Cys-motif partner protein TcmP n=1 Tax=Nitro... [more]
UPI0013DE9A754.450e-2748.72three-Cys-motif partner protein TcmP n=2 Tax=uncla... [more]
A0A6P2NZ42_9BURK7.710e-2746.55Uncharacterized protein n=1 Tax=Burkholderia pseud... [more]
UPI00140ADC312.390e-2646.96three-Cys-motif partner protein TcmP n=1 Tax=Rhizo... [more]
A0A0E1TQB8_BURPE4.520e-2644.74Uncharacterized protein n=10 Tax=Burkholderia TaxI... [more]
UPI00164100D12.370e-2548.57three-Cys-motif partner protein TcmP n=1 Tax=Burkh... [more]
A0A1H6GL56_9HYPH5.190e-2546.09Three-Cys-motif partner protein n=1 Tax=Rhizobium ... [more]
A0A068T8B8_NEOGA5.700e-2545.22Uncharacterized protein n=2 Tax=Neorhizobium galeg... [more]
A0A439VND7_9HYPH1.060e-2442.61Three-Cys-motif partner protein TcmP n=1 Tax=Mesor... [more]
UPI000FD91F192.010e-2445.30three-Cys-motif partner protein TcmP n=1 Tax=Sinor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120449contigM-pyrifera_M_contig120449:166..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog1028801.RG1141_CH23600
Hectar predicted targeting categoryother localisation
EggNOG OGs2DBDD@1,2Z8JQ@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.236297-CDS-M-pyrifera_M_contig120449:165..5341622815724.236297-CDS-M-pyrifera_M_contig120449:165..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120449 166..534 -
1692277539.3469553-CDS-M-pyrifera_M_contig120449:165..5341692277539.3469553-CDS-M-pyrifera_M_contig120449:165..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120449 166..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120449.4218.1prot_M-pyrifera_M_contig120449.4218.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120449 166..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120449.4218.1

>prot_M-pyrifera_M_contig120449.4218.1 ID=prot_M-pyrifera_M_contig120449.4218.1|Name=mRNA_M-pyrifera_M_contig120449.4218.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
KIELFYFFGTSGIHRSIKGFADTATLNTWWGDDGWGAIQNLNQSQAASLM
ADKIRGLGYRDVKAWPITQREKGQGRTMYHMIHATDHDEAPRLMYRAYRK
LVAPAEVQQQMTLLENENFLAE*
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mRNA from alignment at M-pyrifera_M_contig120449:166..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120449.4218.1 ID=mRNA_M-pyrifera_M_contig120449.4218.1|Name=mRNA_M-pyrifera_M_contig120449.4218.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig120449:166..534- (Macrocystis pyrifera P11B4 male)
AAGATCGAGCTCTTTTATTTTTTCGGGACAAGCGGGATCCACCGATCGAT CAAAGGGTTTGCCGACACTGCAACGCTCAATACTTGGTGGGGAGACGACG GTTGGGGAGCCATTCAAAACCTGAATCAATCCCAAGCTGCAAGTTTGATG GCCGACAAGATTCGTGGTTTGGGTTATCGGGACGTGAAGGCGTGGCCAAT AACCCAACGGGAGAAAGGGCAAGGCCGCACGATGTATCACATGATTCATG CGACTGACCATGACGAGGCGCCACGTTTAATGTATCGCGCCTATCGCAAG CTCGTCGCACCGGCGGAAGTCCAGCAGCAAATGACGCTGCTGGAAAACGA AAACTTTTTGGCTGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120449:166..534-

>mRNA_M-pyrifera_M_contig120449.4218.1 ID=mRNA_M-pyrifera_M_contig120449.4218.1|Name=mRNA_M-pyrifera_M_contig120449.4218.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig120449:166..534- (Macrocystis pyrifera P11B4 male)
AAGATCGAGCTCTTTTATTTTTTCGGGACAAGCGGGATCCACCGATCGAT
CAAAGGGTTTGCCGACACTGCAACGCTCAATACTTGGTGGGGAGACGACG
GTTGGGGAGCCATTCAAAACCTGAATCAATCCCAAGCTGCAAGTTTGATG
GCCGACAAGATTCGTGGTTTGGGTTATCGGGACGTGAAGGCGTGGCCAAT
AACCCAACGGGAGAAAGGGCAAGGCCGCACGATGTATCACATGATTCATG
CGACTGACCATGACGAGGCGCCACGTTTAATGTATCGCGCCTATCGCAAG
CTCGTCGCACCGGCGGAAGTCCAGCAGCAAATGACGCTGCTGGAAAACGA
AAACTTTTTGGCTGAATAAAAGATCGAGCTCTTTTATTTTTTCGGGACAA
GCGGGATCCACCGATCGATCAAAGGGTTTGCCGACACTGCAACGCTCAAT
ACTTGGTGGGGAGACGACGGTTGGGGAGCCATTCAAAACCTGAATCAATC
CCAAGCTGCAAGTTTGATGGCCGACAAGATTCGTGGTTTGGGTTATCGGG
ACGTGAAGGCGTGGCCAATAACCCAACGGGAGAAAGGGCAAGGCCGCACG
ATGTATCACATGATTCATGCGACTGACCATGACGAGGCGCCACGTTTAAT
GTATCGCGCCTATCGCAAGCTCGTCGCACCGGCGGAAGTCCAGCAGCAAA
TGACGCTGCTGGAAAACGAAAACTTTTTGGCTGAATAA
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