mRNA_M-pyrifera_M_contig120442.4215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120442.4215.1
Unique NamemRNA_M-pyrifera_M_contig120442.4215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120442.4215.1 vs. uniprot
Match: A0A2D9C367_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C367_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.490e-23
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 KLPMRQRVAALGEALLIAPIHERDAHAWQLVEFAG----FATDQRKHAQAAGPIELLTGLPTRWRARYADDAMLALARAWMQLSPSVRDVAAGLGRQRWLAA 294
            KL  R R+ ALGEAL  A   +RD+ A  L+E A        +Q +  QAAGP+ELLT LP RWR+R+AD+A++ALA AW  LSPSVR +A  LGR RWL A
Sbjct:   17 KLRTRDRIVALGEALPSASADQRDSMALMLIELASREQHTPAEQAREQQAAGPVELLTRLPGRWRSRHADEALMALAHAWSNLSPSVRPLAVALGRDRWLGA 118
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120442.4215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9C367_9BACT1.490e-2353.92Uncharacterized protein n=3 Tax=Phycisphaerae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120442contigM-pyrifera_M_contig120442:1..294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.0891752-CDS-M-pyrifera_M_contig120442:0..2851622815724.0891752-CDS-M-pyrifera_M_contig120442:0..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120442 1..285 -
1692277539.283543-CDS-M-pyrifera_M_contig120442:0..2851692277539.283543-CDS-M-pyrifera_M_contig120442:0..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120442 1..285 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.1028945-UTR-M-pyrifera_M_contig120442:285..2941622815724.1028945-UTR-M-pyrifera_M_contig120442:285..294Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120442 286..294 -
1692277539.293508-UTR-M-pyrifera_M_contig120442:285..2941692277539.293508-UTR-M-pyrifera_M_contig120442:285..294Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120442 286..294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120442.4215.1prot_M-pyrifera_M_contig120442.4215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120442 1..285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120442.4215.1

>prot_M-pyrifera_M_contig120442.4215.1 ID=prot_M-pyrifera_M_contig120442.4215.1|Name=mRNA_M-pyrifera_M_contig120442.4215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MRQRVAALGEALLIAPIHERDAHAWQLVEFAGFATDQRKHAQAAGPIELL
TGLPTRWRARYADDAMLALARAWMQLSPSVRDVAAGLGRQRWLAA
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mRNA from alignment at M-pyrifera_M_contig120442:1..294-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120442.4215.1 ID=mRNA_M-pyrifera_M_contig120442.4215.1|Name=mRNA_M-pyrifera_M_contig120442.4215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig120442:1..294- (Macrocystis pyrifera P11B4 male)
AAGCTCCCGATGCGACAACGAGTTGCAGCGCTGGGAGAAGCATTGCTTAT
CGCGCCGATCCACGAACGCGATGCGCACGCATGGCAGCTTGTGGAATTCG
CAGGATTTGCAACAGATCAGCGCAAACATGCGCAAGCGGCAGGTCCGATC
GAGTTGCTGACGGGTCTCCCAACGCGTTGGCGTGCTCGTTACGCCGACGA
TGCGATGCTCGCGTTGGCGCGCGCATGGATGCAGTTGTCGCCGTCAGTGC
GTGATGTCGCTGCAGGGCTCGGCCGTCAGCGTTGGCTCGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120442:1..294-

>mRNA_M-pyrifera_M_contig120442.4215.1 ID=mRNA_M-pyrifera_M_contig120442.4215.1|Name=mRNA_M-pyrifera_M_contig120442.4215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig120442:1..294- (Macrocystis pyrifera P11B4 male)
ATGCGACAACGAGTTGCAGCGCTGGGAGAAGCATTGCTTATCGCGCCGAT
CCACGAACGCGATGCGCACGCATGGCAGCTTGTGGAATTCGCAGGATTTG
CAACAGATCAGCGCAAACATGCGCAAGCGGCAGGTCCGATCGAGTTGCTG
ACGGGTCTCCCAACGCGTTGGCGTGCTCGTTACGCCGACGATGCGATGCT
CGCGTTGGCGCGCGCATGGATGCAGTTGTCGCCGTCAGTGCGTGATGTCG
CTGCAGGGCTCGGCCGTCAGCGTTGGCTCGCCGCCATGCGACAACGAGTT
GCAGCGCTGGGAGAAGCATTGCTTATCGCGCCGATCCACGAACGCGATGC
GCACGCATGGCAGCTTGTGGAATTCGCAGGATTTGCAACAGATCAGCGCA
AACATGCGCAAGCGGCAGGTCCGATCGAGTTGCTGACGGGTCTCCCAACG
CGTTGGCGTGCTCGTTACGCCGACGATGCGATGCTCGCGTTGGCGCGCGC
ATGGATGCAGTTGTCGCCGTCAGTGCGTGATGTCGCTGCAGGGCTCGGCC
GTCAGCGTTGGCTCGCCGCC
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