mRNA_M-pyrifera_M_contig12044.4214.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12044.4214.1
Unique NamemRNA_M-pyrifera_M_contig12044.4214.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12044.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12044contigM-pyrifera_M_contig12044:112..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size502
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12044.4214.1prot_M-pyrifera_M_contig12044.4214.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12044 238..591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.020096-UTR-M-pyrifera_M_contig12044:111..2371622815724.020096-UTR-M-pyrifera_M_contig12044:111..237Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12044 112..237 +
1692277539.241358-UTR-M-pyrifera_M_contig12044:111..2371692277539.241358-UTR-M-pyrifera_M_contig12044:111..237Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12044 112..237 +
1622815724.0490124-UTR-M-pyrifera_M_contig12044:591..6131622815724.0490124-UTR-M-pyrifera_M_contig12044:591..613Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12044 592..613 +
1692277539.2729497-UTR-M-pyrifera_M_contig12044:591..6131692277539.2729497-UTR-M-pyrifera_M_contig12044:591..613Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12044 592..613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.0359938-CDS-M-pyrifera_M_contig12044:237..5911622815724.0359938-CDS-M-pyrifera_M_contig12044:237..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12044 238..591 +
1692277539.2631586-CDS-M-pyrifera_M_contig12044:237..5911692277539.2631586-CDS-M-pyrifera_M_contig12044:237..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12044 238..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12044.4214.1

>prot_M-pyrifera_M_contig12044.4214.1 ID=prot_M-pyrifera_M_contig12044.4214.1|Name=mRNA_M-pyrifera_M_contig12044.4214.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MPFVWSGKCPPLSARSRLKYISVRLFVLFVCLFTDTEWMTRGVRARARFM
CVGGIHVSHPYRRLANFQPLLASNLSGMLVSRFGISFFCVSRQSGENCRN
RKVTKWPTKRRGILAYG*
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mRNA from alignment at M-pyrifera_M_contig12044:112..613+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12044.4214.1 ID=mRNA_M-pyrifera_M_contig12044.4214.1|Name=mRNA_M-pyrifera_M_contig12044.4214.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=502bp|location=Sequence derived from alignment at M-pyrifera_M_contig12044:112..613+ (Macrocystis pyrifera P11B4 male)
GTTGGCGTGAGTGTCTCCCTCCCAGGCCTGATTGTTTTGTGGGTGTAGCG
GGACGGTGGTGCACGTTTGGTTGGTCGGAGTTGAGAAGTCGCCTTTCGAA
CCAAATGAAATGTGAACTTGTACGTCATGCCCTTCGTCTGGAGTGGGAAG
TGCCCGCCACTTTCGGCACGATCGAGGCTTAAATACATAAGTGTGCGTTT
GTTTGTTTTGTTTGTTTGTCTTTTTACGGATACGGAGTGGATGACGAGAG
GTGTGCGTGCGCGCGCGCGTTTCATGTGTGTTGGAGGAATACATGTTTCG
CATCCGTACCGAAGGCTGGCAAACTTCCAACCCTTGCTAGCGTCAAATTT
GTCCGGCATGTTGGTCAGTCGTTTTGGTATTTCGTTTTTTTGTGTTTCCA
GGCAAAGTGGAGAAAATTGTCGGAACCGAAAAGTCACAAAATGGCCAACT
AAACGACGTGGAATACTGGCATACGGGTAGGCGGGGGAGTGTTATACCAG
TG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12044:112..613+

>mRNA_M-pyrifera_M_contig12044.4214.1 ID=mRNA_M-pyrifera_M_contig12044.4214.1|Name=mRNA_M-pyrifera_M_contig12044.4214.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig12044:112..613+ (Macrocystis pyrifera P11B4 male)
ATGCCCTTCGTCTGGAGTGGGAAGTGCCCGCCACTTTCGGCACGATCGAG
GCTTAAATACATAAGTGTGCGTTTGTTTGTTTTGTTTGTTTGTCTTTTTA
CGGATACGGAGTGGATGACGAGAGGTGTGCGTGCGCGCGCGCGTTTCATG
TGTGTTGGAGGAATACATGTTTCGCATCCGTACCGAAGGCTGGCAAACTT
CCAACCCTTGCTAGCGTCAAATTTGTCCGGCATGTTGGTCAGTCGTTTTG
GTATTTCGTTTTTTTGTGTTTCCAGGCAAAGTGGAGAAAATTGTCGGAAC
CGAAAAGTCACAAAATGGCCAACTAAACGACGTGGAATACTGGCATACGG
GTAGATGCCCTTCGTCTGGAGTGGGAAGTGCCCGCCACTTTCGGCACGAT
CGAGGCTTAAATACATAAGTGTGCGTTTGTTTGTTTTGTTTGTTTGTCTT
TTTACGGATACGGAGTGGATGACGAGAGGTGTGCGTGCGCGCGCGCGTTT
CATGTGTGTTGGAGGAATACATGTTTCGCATCCGTACCGAAGGCTGGCAA
ACTTCCAACCCTTGCTAGCGTCAAATTTGTCCGGCATGTTGGTCAGTCGT
TTTGGTATTTCGTTTTTTTGTGTTTCCAGGCAAAGTGGAGAAAATTGTCG
GAACCGAAAAGTCACAAAATGGCCAACTAAACGACGTGGAATACTGGCAT
ACGGGTAG
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