mRNA_M-pyrifera_M_contig120439.4213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120439.4213.1
Unique NamemRNA_M-pyrifera_M_contig120439.4213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A5B1CKC1_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CKC1_9BACT)

HSP 1 Score: 216 bits (551), Expect = 4.580e-67
Identity = 114/173 (65.90%), Postives = 135/173 (78.03%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVKERRKKKD 519
            DY  +E+ TQLFFAE QNKL YAATG TAAELIV RA+P+EP+MAL NWKGSRVRK+DVI AKNYL QDEIDTLNRLVVIFLEQAELRVK+RKDL+LD+WR+NVD+LLRFND+AVL+G+GKVS E M Q+A++R                      QIE LE+++K  RKK+D
Sbjct:  162 DYGLDERATQLFFAEVQNKLHYAATGQTAAELIVGRANPSEPSMALKNWKGSRVRKQDVIVAKNYLTQDEIDTLNRLVVIFLEQAELRVKKRKDLSLDFWRQNVDDLLRFNDQAVLEGSGKVSREEMTQVAHDRYDSFDAQRRIAEVAEADAEDLRQIEELEQELK--RKKRD 332
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A540V784_9GAMM (Virulence RhuM family protein (Fragment) n=2 Tax=Spiribacter salinus TaxID=1335746 RepID=A0A540V784_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 4.850e-66
Identity = 102/166 (61.45%), Postives = 124/166 (74.70%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVK 498
            DY+ ++++ Q+FFAE QNKLLYA TGHTAAE++V RAD   PNMALT+WKG+RVRK+DV  AKNYL  DE+DTLNRLVVIFLEQAELR KERKDLTLDYWR NVD LL FN+R +LDGAG +S +RM+QIA+ER                      ++E LEE++K
Sbjct:   46 DYRPDDRDAQIFFAEVQNKLLYAVTGHTAAEIVVTRADADSPNMALTSWKGARVRKQDVTIAKNYLSADEVDTLNRLVVIFLEQAELRAKERKDLTLDYWRHNVDRLLAFNERPILDGAGSISRDRMEQIAHERYDQFDAQRRRDEALEADAEDLRELEALEERIK 211
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: UPI001908C9B1 (virulence RhuM family protein n=1 Tax=Halorhodospira abdelmalekii TaxID=421629 RepID=UPI001908C9B1)

HSP 1 Score: 211 bits (537), Expect = 6.830e-65
Identity = 104/166 (62.65%), Postives = 124/166 (74.70%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVK 498
            DY+ ++++ Q FFAE QNKLLYA TGHTAAE++VRRAD   PNMALT+WKG+RVRK+DV  AKNYL  DE+DTLNRLVVIFLEQAELR KERKDLTLDYWR NVD LL FN+R VLDGAG +S +RM+QIA++R                      ++E LEEK+K
Sbjct:  167 DYRPDDRDAQTFFAEVQNKLLYAVTGHTAAEIVVRRADADSPNMALTSWKGARVRKQDVTIAKNYLTADEVDTLNRLVVIFLEQAELRAKERKDLTLDYWRHNVDRLLEFNERPVLDGAGSISRDRMEQIAHQRYEQFDAQRRRDEALAADAEELRELEALEEKIK 332
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A7G2S214_9GAMM (Hydroxyacid dehydrogenase n=1 Tax=Alcanivorax sp. TaxID=1872427 RepID=A0A7G2S214_9GAMM)

HSP 1 Score: 210 bits (534), Expect = 1.780e-64
Identity = 105/166 (63.25%), Postives = 123/166 (74.10%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVK 498
            DYQ  E+ETQLFFAE QNKLLYA T HTAAELI+ RA+P  PNMALT+WKG+RVRK DVI AKNYL  DEIDTLNRLVVIFLEQAELRVK++KDLTLDYWR NVD +L FNDR VL+GAG +S  +M+++AY+R                      +IE LE+ +K
Sbjct:  162 DYQAREQETQLFFAEVQNKLLYATTQHTAAELILERANPDAPNMALTSWKGARVRKADVIVAKNYLDSDEIDTLNRLVVIFLEQAELRVKQQKDLTLDYWRNNVDKMLAFNDRPVLEGAGSISRNQMEKVAYQRFEDFDQKRRIDEAAEADAADLQEIEQLEKAIK 327
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A550EJX4_PSEME (Hydroxyacid dehydrogenase n=2 Tax=Pseudomonas TaxID=286 RepID=A0A550EJX4_PSEME)

HSP 1 Score: 209 bits (532), Expect = 3.660e-64
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVKER 504
            DY+ +E+ET LFFAE QNKLLYA TGHTAAEL+V+RA+P+EPNMALT W GSRVRK+DVI AKNYL  DEIDTLNRLVVIFLEQAELRVK+R+DL+L +WR NVD +L FND+ +L+GAG VS ERM+++A+ER                      +IE LE  +K R
Sbjct:  165 DYRAHEQETALFFAEVQNKLLYATTGHTAAELVVKRANPSEPNMALTTWSGSRVRKQDVIIAKNYLTADEIDTLNRLVVIFLEQAELRVKQRQDLSLAFWRNNVDKMLAFNDQPILEGAGAVSRERMERVAHERYELFDQQRKEAERAQADTDDLKEIEQLEHSIKHR 332
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A391NGF7_PSEXS (Uncharacterized protein n=1 Tax=Pseudomonas sp. (strain SCT) TaxID=412955 RepID=A0A391NGF7_PSEXS)

HSP 1 Score: 209 bits (532), Expect = 3.660e-64
Identity = 104/168 (61.90%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVKER 504
            DY+ +E+ET LFFAE QNKLLYA TGHTAAEL+V+RA+P+EPNMALT W GSRVRK+DVI AKNYL  DEIDTLNRLVVIFLEQAELRVK+R+DL+L +WR NVD +L FND+ +L+GAG VS ERM+++A+ER                      +IE LE  +K R
Sbjct:  165 DYRAHEQETALFFAEVQNKLLYATTGHTAAELVVKRANPSEPNMALTTWSGSRVRKQDVIIAKNYLTADEIDTLNRLVVIFLEQAELRVKQRQDLSLAFWRNNVDKMLAFNDQPILEGAGAVSRERMERVAHERYELFDQQRKEAERAQADTDDLKEIEQLEHSIKHR 332
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A7Z0MVH6_9BURK (Virulence RhuM family protein n=2 Tax=Alcaligenaceae TaxID=506 RepID=A0A7Z0MVH6_9BURK)

HSP 1 Score: 209 bits (531), Expect = 4.760e-64
Identity = 98/134 (73.13%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYER 402
            DYQ  E+ET LFFAE QNKLLYA TG+TAAELI++R+DP++PNMALT+W GSRVRK+DVI AKNYL +DEIDTLNRLVVIFLEQAELRVK++K+LTLD+WR NVD +L FND+A+L+GAG VS E M+++A ER
Sbjct:  162 DYQARERETALFFAEVQNKLLYATTGYTAAELILKRSDPSQPNMALTSWSGSRVRKQDVIIAKNYLNEDEIDTLNRLVVIFLEQAELRVKQQKELTLDFWRNNVDRMLAFNDQAILEGAGSVSRENMEKVARER 295
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: UPI0018F12E9F (virulence RhuM family protein n=1 Tax=Marinomonas spartinae TaxID=1792290 RepID=UPI0018F12E9F)

HSP 1 Score: 209 bits (531), Expect = 4.900e-64
Identity = 105/170 (61.76%), Postives = 131/170 (77.06%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVKERRK 510
            DY  +E++TQLFFA+ QNKLLYAATG+TAAEL+V RAD ++PNMALT+WKGSRVRK+DVI AKNYL +DEIDTLNRLVVIFLEQAELRVK++KDLTL++W+ N+D +L FND+AVLDGAG VSHE MK+IA  R                       +E LE+++K++ K
Sbjct:  164 DYLQHEQDTQLFFAQAQNKLLYAATGYTAAELVVARADVSQPNMALTSWKGSRVRKQDVIIAKNYLTEDEIDTLNRLVVIFLEQAELRVKQQKDLTLEFWQNNLDRMLAFNDQAVLDGAGTVSHEEMKRIAQTRYEDFDQQRRQHEATEADIEDLKSLEALEQRLKDQNK 333
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: S2LBR2_HALAF (Uncharacterized protein n=13 Tax=Proteobacteria TaxID=1224 RepID=S2LBR2_HALAF)

HSP 1 Score: 209 bits (531), Expect = 5.180e-64
Identity = 106/171 (61.99%), Postives = 126/171 (73.68%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERXXXXXXXXXXXXXXXXXXXXXXQIEHLEEKVKERRKK 513
            DYQ  E+ET  FFAE QNKLLYA TGHTAAELI++R++P++PNMALTNW GSRVRK DVI AKNYL  DEIDTLNRLVVIFLEQAELRVK++KDLTLD+WR NVD +L FND+ +L+GAG VS E M++IA ER                      +IE LE+ +K + KK
Sbjct:  165 DYQARERETAQFFAEVQNKLLYATTGHTAAELILKRSNPSQPNMALTNWSGSRVRKHDVIVAKNYLTADEIDTLNRLVVIFLEQAELRVKQQKDLTLDFWRTNVDKMLAFNDQPILEGAGSVSRESMEKIARERYEVFDQQRRIAEAKAADAADLKEIEQLEQDLKHKGKK 335
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BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Match: A0A0G3GBR7_9GAMM (2-hydroxyacid dehydrogenase n=5 Tax=Chromatiales TaxID=135613 RepID=A0A0G3GBR7_9GAMM)

HSP 1 Score: 209 bits (531), Expect = 5.480e-64
Identity = 99/131 (75.57%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:    1 DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWKGSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYWRENVDNLLRFNDRAVLDGAGKVSHERMKQIA 393
            DYQ ++++  LFFAE QNKLLYA TGHTAAE++V+RADP  PNMALTNWKG+RVRK+DV  AKNYL  DEIDTLNRLVVIFLEQAELR KERKDLTLDYWR NVD LL FN+R +LDGAG +S +RM+QIA
Sbjct:  167 DYQPDDRDANLFFAEVQNKLLYAVTGHTAAEIVVQRADPNSPNMALTNWKGARVRKQDVTIAKNYLTTDEIDTLNRLVVIFLEQAELRAKERKDLTLDYWRHNVDRLLEFNERPILDGAGSISRDRMEQIA 297
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120439.4213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B1CKC1_9BACT4.580e-6765.90Uncharacterized protein n=1 Tax=Rubripirellula obs... [more]
A0A540V784_9GAMM4.850e-6661.45Virulence RhuM family protein (Fragment) n=2 Tax=S... [more]
UPI001908C9B16.830e-6562.65virulence RhuM family protein n=1 Tax=Halorhodospi... [more]
A0A7G2S214_9GAMM1.780e-6463.25Hydroxyacid dehydrogenase n=1 Tax=Alcanivorax sp. ... [more]
A0A550EJX4_PSEME3.660e-6461.90Hydroxyacid dehydrogenase n=2 Tax=Pseudomonas TaxI... [more]
A0A391NGF7_PSEXS3.660e-6461.90Uncharacterized protein n=1 Tax=Pseudomonas sp. (s... [more]
A0A7Z0MVH6_9BURK4.760e-6473.13Virulence RhuM family protein n=2 Tax=Alcaligenace... [more]
UPI0018F12E9F4.900e-6461.76virulence RhuM family protein n=1 Tax=Marinomonas ... [more]
S2LBR2_HALAF5.180e-6461.99Uncharacterized protein n=13 Tax=Proteobacteria Ta... [more]
A0A0G3GBR7_9GAMM5.480e-6475.572-hydroxyacid dehydrogenase n=5 Tax=Chromatiales T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120439contigM-pyrifera_M_contig120439:7..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score209.1
Seed ortholog evalue1.6e-51
Seed eggNOG ortholog1121939.L861_15820
Preferred namerhuM
KEGG koko:K14623
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Virulence protein RhuM family
EggNOG OGs1MWKW@1224,1RPNB@1236,1XIB0@135619,COG3943@1,COG3943@2
COG Functional cat.S
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size531
Cds size531
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.9778154-CDS-M-pyrifera_M_contig120439:6..5371622815723.9778154-CDS-M-pyrifera_M_contig120439:6..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120439 7..537 -
1692277539.2232344-CDS-M-pyrifera_M_contig120439:6..5371692277539.2232344-CDS-M-pyrifera_M_contig120439:6..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120439 7..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120439.4213.1prot_M-pyrifera_M_contig120439.4213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120439 7..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120439.4213.1

>prot_M-pyrifera_M_contig120439.4213.1 ID=prot_M-pyrifera_M_contig120439.4213.1|Name=mRNA_M-pyrifera_M_contig120439.4213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
DYQGNEKETQLFFAETQNKLLYAATGHTAAELIVRRADPAEPNMALTNWK
GSRVRKEDVITAKNYLGQDEIDTLNRLVVIFLEQAELRVKERKDLTLDYW
RENVDNLLRFNDRAVLDGAGKVSHERMKQIAYERYEEFDESRRAAEALEA
DAEDLRQIEHLEEKVKERRKKKDNGS*
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mRNA from alignment at M-pyrifera_M_contig120439:7..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120439.4213.1 ID=mRNA_M-pyrifera_M_contig120439.4213.1|Name=mRNA_M-pyrifera_M_contig120439.4213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig120439:7..537- (Macrocystis pyrifera P11B4 male)
GACTACCAAGGCAATGAGAAGGAGACCCAACTCTTTTTCGCTGAGACCCA
GAACAAGCTGCTCTACGCGGCGACCGGCCACACCGCCGCGGAGTTGATCG
TCAGGCGGGCCGACCCGGCCGAGCCAAACATGGCCCTGACCAACTGGAAG
GGGTCGCGTGTCCGTAAGGAAGACGTGATTACGGCCAAGAATTACCTGGG
CCAAGACGAGATAGACACGCTCAACCGGCTGGTCGTTATCTTTCTGGAGC
AGGCGGAGCTGCGAGTGAAGGAGCGAAAAGATTTAACGCTCGACTATTGG
CGGGAGAACGTCGATAACCTGTTGCGGTTCAACGACCGCGCGGTGCTGGA
TGGCGCCGGCAAGGTTAGTCATGAGCGGATGAAGCAGATCGCCTACGAGC
GGTACGAGGAGTTCGACGAGAGTCGCCGCGCCGCCGAGGCTCTTGAGGCG
GACGCCGAGGACTTGCGACAGATTGAGCATTTGGAAGAGAAAGTCAAGGA
GCGACGAAAGAAGAAGGACAACGGTTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120439:7..537-

>mRNA_M-pyrifera_M_contig120439.4213.1 ID=mRNA_M-pyrifera_M_contig120439.4213.1|Name=mRNA_M-pyrifera_M_contig120439.4213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig120439:7..537- (Macrocystis pyrifera P11B4 male)
GACTACCAAGGCAATGAGAAGGAGACCCAACTCTTTTTCGCTGAGACCCA
GAACAAGCTGCTCTACGCGGCGACCGGCCACACCGCCGCGGAGTTGATCG
TCAGGCGGGCCGACCCGGCCGAGCCAAACATGGCCCTGACCAACTGGAAG
GGGTCGCGTGTCCGTAAGGAAGACGTGATTACGGCCAAGAATTACCTGGG
CCAAGACGAGATAGACACGCTCAACCGGCTGGTCGTTATCTTTCTGGAGC
AGGCGGAGCTGCGAGTGAAGGAGCGAAAAGATTTAACGCTCGACTATTGG
CGGGAGAACGTCGATAACCTGTTGCGGTTCAACGACCGCGCGGTGCTGGA
TGGCGCCGGCAAGGTTAGTCATGAGCGGATGAAGCAGATCGCCTACGAGC
GGTACGAGGAGTTCGACGAGAGTCGCCGCGCCGCCGAGGCTCTTGAGGCG
GACGCCGAGGACTTGCGACAGATTGAGCATTTGGAAGAGAAAGTCAAGGA
GCGACGAAAGAAGAAGGACAACGGTTCATGAGACTACCAAGGCAATGAGA
AGGAGACCCAACTCTTTTTCGCTGAGACCCAGAACAAGCTGCTCTACGCG
GCGACCGGCCACACCGCCGCGGAGTTGATCGTCAGGCGGGCCGACCCGGC
CGAGCCAAACATGGCCCTGACCAACTGGAAGGGGTCGCGTGTCCGTAAGG
AAGACGTGATTACGGCCAAGAATTACCTGGGCCAAGACGAGATAGACACG
CTCAACCGGCTGGTCGTTATCTTTCTGGAGCAGGCGGAGCTGCGAGTGAA
GGAGCGAAAAGATTTAACGCTCGACTATTGGCGGGAGAACGTCGATAACC
TGTTGCGGTTCAACGACCGCGCGGTGCTGGATGGCGCCGGCAAGGTTAGT
CATGAGCGGATGAAGCAGATCGCCTACGAGCGGTACGAGGAGTTCGACGA
GAGTCGCCGCGCCGCCGAGGCTCTTGAGGCGGACGCCGAGGACTTGCGAC
AGATTGAGCATTTGGAAGAGAAAGTCAAGGAGCGACGAAAGAAGAAGGAC
AACGGTTCATGA
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