mRNA_M-pyrifera_M_contig120401.4208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120401.4208.1
Unique NamemRNA_M-pyrifera_M_contig120401.4208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A2P6NYB9_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NYB9_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 3.790e-14
Identity = 36/74 (48.65%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVMYAVYGDIDSEPEAFGFGI--SMLYIGNLVFRLGHNVLFAFCGPRYRVV 267
            Y+E  FV LP+F GYA LF+ +  VM  +    ++  EA+ FG+  S++Y+GNL+FRLGHN++FAF  PR+RV+
Sbjct:   42 YWECMFVTLPIFSGYACLFALRHDVMVLLNITDNNSTEAYWFGVASSLVYLGNLIFRLGHNLVFAFATPRFRVL 115          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A7S2NPS6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NPS6_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 5.280e-13
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVM--YAVYGDIDSEPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRV 264
            Y+E FFV LPVF GYAALF  Q  V   Y +  D  +    F F ISM+Y GNLV R GH V+F +  PR RV
Sbjct:    7 YWEAFFVALPVFCGYAALFGMQHHVKAKYGIKDDASAASYDFSFAISMVYFGNLVIRFGHKVVFCWMTPRCRV 79          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A0S4JBM1_BODSA (Transmembrane protein, putative (Fragment) n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JBM1_BODSA)

HSP 1 Score: 69.7 bits (169), Expect = 5.930e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   64 FFVVLPVFMGYAALFSQQDQVMYAV-YGDIDS-EPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRVV 267
            FF + P+FMGYAA+ + QD +   +  GD  S E   F F  S+LY+GNL+FRL HN++F+F  PRYRVV
Sbjct:  145 FFTMFPLFMGYAAMVTLQDNIKTQLGIGDNSSHESYEFSFATSLLYLGNLIFRLLHNIIFSFMRPRYRVV 214          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A0S4JWZ1_BODSA (Membrane-associated protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JWZ1_BODSA)

HSP 1 Score: 63.5 bits (153), Expect = 8.730e-10
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVMYAVYGDIDSEPEAFGFGI--SMLYIGNLVFRLGHNVLFAFCGPRYRVV 267
            YY   F  + VFMGY+ +   QD++   + G +    +A+ FG+  S LY+GNL+FRL HNVLF+F  PR RV+
Sbjct:  110 YYRAIFTTISVFMGYSGMIVLQDKLKTRL-GIVTGSDDAYVFGVAVSFLYLGNLIFRLMHNVLFSFLKPRQRVM 182          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A7S1WU72_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WU72_ALECA)

HSP 1 Score: 61.2 bits (147), Expect = 5.560e-9
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVM--YAVYGDIDSEPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRV 264
            Y+E FFVVLP++ GYA+LF  Q  V     +  D     + FGF IS LYI NL+FR  H ++FA    R RV
Sbjct:   60 YWEGFFVVLPLYFGYASLFGLQHDVKARMGIMDDNSENSQMFGFAISFLYIFNLLFRFLHGIVFARLSSRGRV 132          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A813KWQ5_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KWQ5_POLGL)

HSP 1 Score: 60.8 bits (146), Expect = 8.120e-9
Identity = 34/87 (39.08%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   10 ADEVSKRVNPNNVKYYEIFFVVLPVFMGYAALFSQQDQVM--YAVYGDIDSEPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRV 264
             D   K    +   Y+E FFVVLP + GYAALF  Q  +   + +  D       FGF +S LY+ +LVFR+ H V+     PR RV
Sbjct:  943 GDAAEKPAAESGQVYWEGFFVVLPFYCGYAALFGCQHAIKARFGIKDDSSETSHDFGFAVSSLYLFSLVFRVAHKVVLGGFSPRTRV 1029          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A6A7G760_9CRUS (Transmembrane protein n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G760_9CRUS)

HSP 1 Score: 56.2 bits (134), Expect = 3.270e-7
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVMY--AVYGDIDSEPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRV 264
            + EI  V   VF GY  L   Q+++     + GD D     F F +S LYIGNL+FR+ HN++F++  PR+RV
Sbjct:  122 FREIMLVTCAVFQGYGILVLFQNKLAQEIGIIGDNDPRSGQFHFAVSFLYIGNLLFRVLHNLVFSWIRPRFRV 194          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A7S1C6D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6D8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.030e-7
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVMYAVYGDIDSEPEA---FGFGISMLYIGNLVFRLGHNVLFAFCGPRYRV 264
            Y     + L +FMGYA+L + Q +V   + G  D + +A   F F +S LYIGNL FRL HNVLFA   PR RV
Sbjct:   64 YRAAMILPLGIFMGYASLNALQRKVKMRI-GISDDDKDASYLFSFAVSFLYIGNLCFRLLHNVLFAALLPRQRV 136          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A7S1WAI1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1WAI1_NEODS)

HSP 1 Score: 55.1 bits (131), Expect = 7.070e-7
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   61 IFFVVLPVFMGYAALFSQQDQVMYAVYGDIDSEPEA---FGFGISMLYIGNLVFRLGHNVLFAFCGPRYRVV 267
            +   V+PVFMGYA L S Q+++   + G  D++  A   F  G+S+++IG+L+FRL HNV  +F  PR RV+
Sbjct:   86 VALAVMPVFMGYAVLLSLQERLRKHL-GIEDNKSHAAHVFQTGVSLIFIGDLIFRLMHNVFLSFLRPRRRVL 156          
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Match: A0A0L1KPB1_9EUGL (Major facilitator superfamily transporter n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KPB1_9EUGL)

HSP 1 Score: 53.9 bits (128), Expect = 2.120e-6
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   52 YYEIFFVVLPVFMGYAALFSQQDQVMYAVYGDIDS-EPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRVV 267
            Y  +  V +P+FMGYA L   Q  +   +  +  S E + F   +S LY+GN+ FRL HN++F+F  PR RV+
Sbjct:  103 YITMMIVTIPIFMGYACLNVGQKNLRDRLGIEHASHEAKLFNIAVSFLYLGNMTFRLLHNLVFSFIRPRSRVI 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120401.4208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2P6NYB9_9EUKA3.790e-1448.65Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7S2NPS6_9DINO5.280e-1352.05Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A0S4JBM1_BODSA5.930e-1251.43Transmembrane protein, putative (Fragment) n=1 Tax... [more]
A0A0S4JWZ1_BODSA8.730e-1044.59Membrane-associated protein, putative n=1 Tax=Bodo... [more]
A0A7S1WU72_ALECA5.560e-946.58Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A813KWQ5_POLGL8.120e-939.08Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A6A7G760_9CRUS3.270e-741.10Transmembrane protein n=2 Tax=Hirondellea gigas Ta... [more]
A0A7S1C6D8_9STRA6.030e-747.30Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1WAI1_NEODS7.070e-743.06Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A0L1KPB1_9EUGL2.120e-639.73Major facilitator superfamily transporter n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120401contigM-pyrifera_M_contig120401:118..384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.7427943-CDS-M-pyrifera_M_contig120401:117..3841622815723.7427943-CDS-M-pyrifera_M_contig120401:117..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120401 118..384 -
1692277539.128439-CDS-M-pyrifera_M_contig120401:117..3841692277539.128439-CDS-M-pyrifera_M_contig120401:117..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120401 118..384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120401.4208.1prot_M-pyrifera_M_contig120401.4208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120401 118..384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120401.4208.1

>prot_M-pyrifera_M_contig120401.4208.1 ID=prot_M-pyrifera_M_contig120401.4208.1|Name=mRNA_M-pyrifera_M_contig120401.4208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
IDTADEVSKRVNPNNVKYYEIFFVVLPVFMGYAALFSQQDQVMYAVYGDI
DSEPEAFGFGISMLYIGNLVFRLGHNVLFAFCGPRYRVV
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mRNA from alignment at M-pyrifera_M_contig120401:118..384-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120401.4208.1 ID=mRNA_M-pyrifera_M_contig120401.4208.1|Name=mRNA_M-pyrifera_M_contig120401.4208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig120401:118..384- (Macrocystis pyrifera P11B4 male)
ATCGACACAGCTGATGAAGTGAGCAAGCGCGTGAACCCGAACAATGTGAA GTACTACGAGATCTTCTTCGTTGTGCTCCCTGTATTCATGGGGTATGCCG CTCTCTTCAGTCAGCAAGACCAAGTCATGTACGCCGTCTACGGAGACATC GATTCAGAACCCGAGGCGTTTGGGTTTGGTATCTCCATGCTCTACATCGG AAACCTTGTGTTCCGCCTTGGCCATAACGTCCTCTTTGCCTTCTGCGGGC CCCGGTACCGTGTGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120401:118..384-

>mRNA_M-pyrifera_M_contig120401.4208.1 ID=mRNA_M-pyrifera_M_contig120401.4208.1|Name=mRNA_M-pyrifera_M_contig120401.4208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig120401:118..384- (Macrocystis pyrifera P11B4 male)
ATCGACACAGCTGATGAAGTGAGCAAGCGCGTGAACCCGAACAATGTGAA
GTACTACGAGATCTTCTTCGTTGTGCTCCCTGTATTCATGGGGTATGCCG
CTCTCTTCAGTCAGCAAGACCAAGTCATGTACGCCGTCTACGGAGACATC
GATTCAGAACCCGAGGCGTTTGGGTTTGGTATCTCCATGCTCTACATCGG
AAACCTTGTGTTCCGCCTTGGCCATAACGTCCTCTTTGCCTTCTGCGGGC
CCCGGTACCGTGTGGTAATCGACACAGCTGATGAAGTGAGCAAGCGCGTG
AACCCGAACAATGTGAAGTACTACGAGATCTTCTTCGTTGTGCTCCCTGT
ATTCATGGGGTATGCCGCTCTCTTCAGTCAGCAAGACCAAGTCATGTACG
CCGTCTACGGAGACATCGATTCAGAACCCGAGGCGTTTGGGTTTGGTATC
TCCATGCTCTACATCGGAAACCTTGTGTTCCGCCTTGGCCATAACGTCCT
CTTTGCCTTCTGCGGGCCCCGGTACCGTGTGGTA
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