mRNA_M-pyrifera_M_contig120394.4204.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120394.4204.1
Unique NamemRNA_M-pyrifera_M_contig120394.4204.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A1B6CZJ0_9HEMI (Phosphoserine phosphatase n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CZJ0_9HEMI)

HSP 1 Score: 112 bits (281), Expect = 9.480e-29
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTS---DLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            D V+ +W+ VD V FD DSTV+Q EGI+ELA+ CG GAEV ALT  AM G++ F DAL+ RL+ I+P+ S   +  RC   LLTPG K L E L  K + V++ISGGF
Sbjct:   16 DSVRNIWKNVDAVSFDVDSTVIQEEGIDELAKFCGKGAEVEALTRSAMKGTMDFRDALAARLSIIRPELSQVREFIRCRPPLLTPGVKQLIEALQQKCIPVYLISGGF 123          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A1B6KVH6_9HEMI (Phosphoserine phosphatase n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KVH6_9HEMI)

HSP 1 Score: 110 bits (275), Expect = 5.390e-28
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKP---KTSDLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            DEV  +W+  D VCFD DSTV+Q EGI+ELA+ CG G EV A+T  AM GS+ F DAL+ RLN I+P   +  D  R     LTPG K L + LH + + V+++SGGF
Sbjct:    2 DEVINIWKEADAVCFDVDSTVIQEEGIDELAKFCGKGTEVQAMTRNAMGGSMGFRDALTARLNIIRPTMTQVRDFIRTRPPRLTPGIKKLVDCLHQRSIPVYLVSGGF 109          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A1B6I462_9HEMI (Phosphoserine phosphatase n=10 Tax=Proconiini TaxID=565685 RepID=A0A1B6I462_9HEMI)

HSP 1 Score: 110 bits (274), Expect = 1.770e-27
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKP---KTSDLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            DEV  +W+  D VCFD DSTV+Q EGI+ELA+ CG G EV A+T  AM GS+ F +AL+ RLN I+P   +  D  R     LTPG K L E LH + + V+++SGGF
Sbjct:   39 DEVINIWKEADAVCFDVDSTVIQEEGIDELAKFCGKGTEVQAMTRNAMGGSMGFREALTARLNIIRPTMTQVRDFIRTRPPRLTPGIKKLVECLHQRSIPVYLVSGGF 146          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A0L0FMF1_9EUKA (Phosphoserine phosphatase SerB n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FMF1_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 1.170e-26
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTSDLARC--PVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            D V++L +  D VCFD DSTVVQ EGI+ELA VCGVG  V A T  AM G+ LF+D+L  RL  I+P   D+A+C  P + LT G K L + +   G  V+++SGGF
Sbjct:    6 DTVRSLMQAADAVCFDVDSTVVQHEGIDELAAVCGVGEAVAAWTKKAMEGNTLFQDSLKARLFLIQPSKKDIAKCLEPGLGLTTGVKELIQKMKDSGKDVYLVSGGF 112          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A482VE56_9CUCU (Phosphoserine phosphatase n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VE56_9CUCU)

HSP 1 Score: 105 bits (261), Expect = 7.240e-26
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 MSDEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTS---DLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            MS E++ +  + D VCFD DSTV+Q EGI+ELA+ C  G EV  LT+ AM GS+ F+++L +RLN I+P  +   D  +     LTPG K L  +LHS+ V V++ISGGF
Sbjct:    1 MSGEIQKILRKADGVCFDVDSTVIQEEGIDELAKFCNKGTEVANLTAKAMTGSMTFQESLKLRLNIIQPTLNQIRDFVKTSPPTLTPGIKKLTNLLHSRNVPVYLISGGF 110          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A1W4XNK7_AGRPL (Phosphoserine phosphatase n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4XNK7_AGRPL)

HSP 1 Score: 104 bits (259), Expect = 1.510e-25
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    4 SDEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKP---KTSDLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            SDE++ +W + D VCFD DSTV+Q EGI+ELA   G G E+  LT  AM+G + F  +L++RLN ++P   +  D  R     LTPG K L ++LHS+ V V+++SGGF
Sbjct:    3 SDEIQNVWRQTDAVCFDVDSTVIQEEGIDELAGFLGKGNEIARLTREAMSGDMTFRQSLNIRLNILQPTLVQIRDFVRTKPPTLTPGIKKLVDVLHSRNVPVFLVSGGF 111          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: D2A0T2_TRICA (Phosphoserine phosphatase n=2 Tax=Tribolium TaxID=7069 RepID=D2A0T2_TRICA)

HSP 1 Score: 103 bits (258), Expect = 2.040e-25
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 MSDEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTS---DLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            MS EV+ + +  D VCFD DSTV+Q EGI+ELA+ C  GAEV  LT+ AM G++ F+++L +RL+ I+P  +   D  +     LTPG K L  +LHS+ + V++ISGGF
Sbjct:    1 MSGEVQKILKNADCVCFDVDSTVIQEEGIDELAKFCNKGAEVANLTAKAMTGTMTFQESLKLRLDIIQPTLTQIRDFLKTKPPTLTPGVKNLINLLHSRKIPVYLISGGF 110          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: UPI0007719746 (phosphoserine phosphatase isoform X1 n=2 Tax=Cephus cinctus TaxID=211228 RepID=UPI0007719746)

HSP 1 Score: 104 bits (260), Expect = 2.060e-25
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKP---KTSDLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            D VK +W+  D V FD DSTV+Q EGI+ELA+ CG G +V  LT  AM G++ F+ +LS+RLN I+P   +  +  R     LTPG K L + LHS G  V+++SGGF
Sbjct:   35 DGVKFIWKNADAVSFDVDSTVIQDEGIDELAKFCGKGEQVAELTKAAMQGNMTFQQSLSVRLNIIQPSLTQVKEFLRTHPPTLTPGIKNLVDTLHSNGKQVYLVSGGF 142          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A2T7NU30_POMCA (Phosphoserine phosphatase n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NU30_POMCA)

HSP 1 Score: 103 bits (258), Expect = 2.730e-25
Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   13 VKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTSDL-----ARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            V+ LW   D VCFD DSTV + EG++ELAE CG GAEV   T+ AM G V F +AL+ RLN +KP    L     +R P   LT G K L  +LHSK V V+++SGGF
Sbjct:   12 VRELWRTADAVCFDVDSTVCKDEGLDELAEFCGAGAEVREWTNKAMGGDVTFREALTQRLNIVKPSQQQLEAFITSRPPQ--LTDGIKDLVSLLHSKNVPVFLVSGGF 117          
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Match: A0A834M717_RHYFE (Phosphoserine phosphatase n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834M717_RHYFE)

HSP 1 Score: 103 bits (257), Expect = 2.870e-25
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    7 DEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAMNGSVLFEDALSMRLNCIKPKTS---DLARCPVMLLTPGAKCLFEMLHSKGVTVWIISGGF 321
            +EV A+  RVD VCFD DSTV++ EGI+ELA+ C  G EV  LTS AM G + FE++L +RL+ I+P  S   D  R     LTPG K L ++LH +   V++ISGGF
Sbjct:    2 EEVLAVLNRVDAVCFDVDSTVIRQEGIDELAKFCNKGKEVAQLTSKAMTGLMTFEESLQLRLDIIQPSLSQVNDFIRTQPPTLTPGVKDLIQVLHRRKTPVYLISGGF 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120394.4204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6CZJ0_9HEMI9.480e-2953.70Phosphoserine phosphatase n=1 Tax=Clastoptera ariz... [more]
A0A1B6KVH6_9HEMI5.390e-2850.93Phosphoserine phosphatase n=2 Tax=Graphocephala at... [more]
A0A1B6I462_9HEMI1.770e-2750.93Phosphoserine phosphatase n=10 Tax=Proconiini TaxI... [more]
A0A0L0FMF1_9EUKA1.170e-2650.47Phosphoserine phosphatase SerB n=1 Tax=Sphaeroform... [more]
A0A482VE56_9CUCU7.240e-2648.18Phosphoserine phosphatase n=1 Tax=Asbolus verrucos... [more]
A0A1W4XNK7_AGRPL1.510e-2546.79Phosphoserine phosphatase n=1 Tax=Agrilus planipen... [more]
D2A0T2_TRICA2.040e-2547.27Phosphoserine phosphatase n=2 Tax=Tribolium TaxID=... [more]
UPI00077197462.060e-2548.15phosphoserine phosphatase isoform X1 n=2 Tax=Cephu... [more]
A0A2T7NU30_POMCA2.730e-2550.93Phosphoserine phosphatase n=2 Tax=Pomacea canalicu... [more]
A0A834M717_RHYFE2.870e-2550.00Phosphoserine phosphatase n=1 Tax=Rhynchophorus fe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120394contigM-pyrifera_M_contig120394:12..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score105.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog72019.SARC_09617T0
Preferred namePSPH
KEGG rclassRC00017
KEGG koko:K01079
KEGG ReactionR00582
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016043,GO:0016053,GO:0016311,GO:0016545,GO:0016787,GO:0016788,GO:0016791,GO:0019098,GO:0019752,GO:0019953,GO:0022008,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031175,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033574,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045433,GO:0045471,GO:0046394,GO:0046677,GO:0046872,GO:0046983,GO:0048065,GO:0048149,GO:0048468,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051704,GO:0060179,GO:0061564,GO:0071704,GO:0071840,GO:0097305,GO:0097458,GO:0097485,GO:0120025,GO:0120036,GO:0120039,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901654,GO:1901700
EggNOG free text desc.phosphoserine phosphatase
EggNOG OGs38F2C@33154,COG0560@1,KOG1615@2759
EC3.1.3.3
COG Functional cat.E
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons2
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.2766213-CDS-M-pyrifera_M_contig120394:11..681622815723.2766213-CDS-M-pyrifera_M_contig120394:11..68Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120394 12..68 -
1692277538.7793236-CDS-M-pyrifera_M_contig120394:11..681692277538.7793236-CDS-M-pyrifera_M_contig120394:11..68Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120394 12..68 -
1622815723.2885196-CDS-M-pyrifera_M_contig120394:167..4311622815723.2885196-CDS-M-pyrifera_M_contig120394:167..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120394 168..431 -
1692277538.7919977-CDS-M-pyrifera_M_contig120394:167..4311692277538.7919977-CDS-M-pyrifera_M_contig120394:167..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120394 168..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120394.4204.1prot_M-pyrifera_M_contig120394.4204.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120394 12..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120394.4204.1

>prot_M-pyrifera_M_contig120394.4204.1 ID=prot_M-pyrifera_M_contig120394.4204.1|Name=mRNA_M-pyrifera_M_contig120394.4204.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MSDEVKALWERVDVVCFDFDSTVVQGEGINELAEVCGVGAEVTALTSGAM
NGSVLFEDALSMRLNCIKPKTSDLARCPVMLLTPGAKCLFEMLHSKGVTV
WIISGGF
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mRNA from alignment at M-pyrifera_M_contig120394:12..431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120394.4204.1 ID=mRNA_M-pyrifera_M_contig120394.4204.1|Name=mRNA_M-pyrifera_M_contig120394.4204.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig120394:12..431- (Macrocystis pyrifera P11B4 male)
ATGTCAGATGAAGTGAAAGCACTCTGGGAGAGAGTAGATGTCGTGTGCTT CGACTTTGATAGCACCGTCGTGCAAGGAGAGGGCATCAACGAGCTCGCAG AGGTGTGTGGCGTTGGTGCGGAGGTCACCGCGCTCACAAGTGGAGCAATG AACGGCAGTGTGCTGTTCGAGGACGCTCTCAGCATGCGGCTCAACTGCAT CAAGCCCAAGACCTCTGACCTTGCGCGTTGCCCCGTCATGCTCCTCACTC CAGGCGCGAAGTGCGTCGCGCTCCCTCTGCTCTTCTCCTCTGCGTGAACC ACAGCCGAAGTAGTGTTGTGCTGTGACTTTGGTAGACCGCTTTGCTGACC TGGCTGGAGGGAGCTCTTCGAAATGCTGCACAGCAAAGGAGTGACGGTGT GGATCATCTCGGGCGGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120394:12..431-

>mRNA_M-pyrifera_M_contig120394.4204.1 ID=mRNA_M-pyrifera_M_contig120394.4204.1|Name=mRNA_M-pyrifera_M_contig120394.4204.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig120394:12..431- (Macrocystis pyrifera P11B4 male)
ATGTCAGATGAAGTGAAAGCACTCTGGGAGAGAGTAGATGTCGTGTGCTT
CGACTTTGATAGCACCGTCGTGCAAGGAGAGGGCATCAACGAGCTCGCAG
AGGTGTGTGGCGTTGGTGCGGAGGTCACCGCGCTCACAAGTGGAGCAATG
AACGGCAGTGTGCTGTTCGAGGACGCTCTCAGCATGCGGCTCAACTGCAT
CAAGCCCAAGACCTCTGACCTTGCGCGTTGCCCCGTCATGCTCCTCACTC
CAGGCGCGAAGTGCATGTCAGATGAAGTGAAAGCACTCTGGGAGAGAGTA
GATGTCGTGTGCTTCGACTTTGATAGCACCGTCGTGCAAGGAGAGGGCAT
CAACGAGCTCGCAGAGGTGTGTGGCGTTGGTGCGGAGGTCACCGCGCTCA
CAAGTGGAGCAATGAACGGCAGTGTGCTGTTCGAGGACGCTCTCAGCATG
CGGCTCAACTGCATCAAGCCCAAGACCTCTGACCTTGCGCGTTGCCCCGT
CATGCTCCTCACTCCAGGCGCGAAGTGCCTCTTCGAAATGCTGCACAGCA
AAGGAGTGACGGTGTGGATCATCTCGGGCGGCTTCCTCTTCGAAATGCTG
CACAGCAAAGGAGTGACGGTGTGGATCATCTCGGGCGGCTTC
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