mRNA_M-pyrifera_M_contig120377.4200.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120377.4200.1
Unique NamemRNA_M-pyrifera_M_contig120377.4200.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A7S4HYJ8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HYJ8_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 2.230e-35
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 QVVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            Q V+ VHVLLL  D +P+  +L   +  V+YY LL KFP  + TD  FLA C  AV++HC+WFVYF  +YYPF +ILAFF ICVW+IPFGFFISLSANES LP
Sbjct:   68 QFVLFVHVLLLFFDTLPLAYILLGLSAHVLYYLLLAKFPFFKFTDPLFLACCGMAVVDHCVWFVYFSRNYYPFNQILAFFTICVWLIPFGFFISLSANESVLP 170
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A7S0WN95_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WN95_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 8.080e-28
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    7 VVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            +VGVHVLLLV+D +P L +    A    Y+ LL+KFP I LT   FLASCA   +NH +W  +F   YY  + ++ FF ICVW++PFGFFISL+ANES LP
Sbjct:   54 IVGVHVLLLVVDRLPFLCIASGVAAHGAYFTLLKKFPFISLTSPEFLASCALLALNHYMWLKHFMQQYYTVEYVMGFFLICVWLVPFGFFISLAANESVLP 154
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: L8GQG3_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQG3_ACACA)

HSP 1 Score: 108 bits (270), Expect = 1.720e-27
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    4 VVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            VVV +H++L++L+++P L LL        Y+ LL  FP IE TD  FL S A A+ +HCLWF YF  +YYPF EILAFF + VW +PF FF+SL+AN+S LP
Sbjct:   52 VVVVLHLMLMILENLPPLYLLLGLVAHGAYFSLLPSFPYIEFTDPRFLVSVALAISDHCLWFWYFTQYYYPFSEILAFFVLIVWAVPFLFFLSLTANDSNLP 153
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A397UNM2_9GLOM (Transmembrane adaptor Erv26 (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UNM2_9GLOM)

HSP 1 Score: 106 bits (265), Expect = 2.420e-27
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    4 VVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            VVV +H+LL + DD P  +++FS     VY   L+ FP I LT   F+ASC   +I+H LWF +F SHY+ F +I AFF IC+W+IPF +FISLSAN++ALP
Sbjct:   36 VVVAIHILLWMFDDFPFGRIIFSVMCHGVYTLNLKTFPFISLTSIQFIASCVLVLIDHFLWFQFFTSHYFVFIDIAAFFGICIWLIPFAYFISLSANDNALP 137
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A8H7UAC2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UAC2_9FUNG)

HSP 1 Score: 107 bits (266), Expect = 1.110e-26
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    7 VVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            VV +HV L + D  P  Q+LFS A   VY   L+ FP I LT   FLASC   +I+H +WF YF  HY PF +I AFF +CVW+IPF +FISLSAN++ALP
Sbjct:   52 VVFIHVCLFIFDRKPFFQVLFSLACHGVYSMNLQTFPFISLTSPPFLASCVLVLIDHFVWFQYFTRHYTPFMDIAAFFGVCVWLIPFAYFISLSANDNALP 152
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A068RW46_9FUNG (Duf396 domain protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RW46_9FUNG)

HSP 1 Score: 106 bits (264), Expect = 2.780e-26
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    7 VVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            V+ +HVLL ++D +P L L FS     VY   L+ FP I LT   F+ASC    ++H LWF YF +HY PF +I AFF ICVW+IPF +FISLSAN++ALP
Sbjct:   54 VIAIHVLLWIVDRLPFLLLAFSIFCHGVYTMNLKTFPFISLTSLPFIASCVLVFVDHFLWFQYFTTHYRPFMDIAAFFGICVWLIPFTYFISLSANDNALP 154
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A138ZYS2_GONPJ (DUF396-domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZYS2_GONPJ)

HSP 1 Score: 106 bits (265), Expect = 3.260e-26
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    4 VVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            +V  +H  L ++D +P+ ++LFS A  +VY+QLL  FP++ LT   FL SCA AVINH +WF +F  +Y+ F ++ +FF I VW++PF FFISLSANE+ LP
Sbjct:   87 IVTFLHPFLWLIDSLPLTRVLFSLACHIVYWQLLPSFPIVRLTSWLFLLSCALAVINHFMWFSFFARNYHTFPQVASFFAIYVWLVPFEFFISLSANENVLP 188
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A163ISS4_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163ISS4_ABSGL)

HSP 1 Score: 104 bits (260), Expect = 1.130e-25
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    4 VVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCA-----CAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            VVV +H+LL + D +PVLQLLFS     VY   L+ FP I+LT   F+ASC         ++H LWF YF  +Y PF +I +FF +CVW+IPF +FISLSAN++ALP
Sbjct:    4 VVVAIHILLCIFDRLPVLQLLFSVMCHGVYSLNLKNFPFIQLTSVPFIASCGWGDLVLVFVDHFLWFRYFTKYYRPFMDIASFFGVCVWLIPFTYFISLSANDNALP 110
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BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A8H7V241_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7V241_9FUNG)

HSP 1 Score: 104 bits (260), Expect = 1.280e-25
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 QVVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            QV++ +HVL  + D +P   L FS    +VY   L  FP I LT   F+ SC     NH LWF YF SHY PF +I AFF +CVW++PF +FISLSAN++ALP
Sbjct:   63 QVIISLHVLFWIFDRLPFFYLAFSILCHLVYSLNLETFPFISLTSVPFIGSCILVFANHFLWFRYFTSHYRPFMDIAAFFGLCVWLVPFAYFISLSANDNALP 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Match: A0A507DG70_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DG70_9FUNG)

HSP 1 Score: 103 bits (257), Expect = 1.470e-25
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    7 VVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLASCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANESALP 309
            V+ VH+LL   D +P L+L FS A QV Y QLL  FP+IE  D  F+  C   V NHC WF YF   Y+PF +   FF ICVW++PF +FIS+SAN+ ALP
Sbjct:   51 VIIVHILLF-FDGLPFLRLAFSLACQVWYLQLLPAFPIIEFADPMFIGLCGLVVSNHCWWFFYFTQKYHPFPQTATFFGICVWLVPFLYFISVSANDYALP 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120377.4200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HYJ8_9EUKA2.230e-3561.17Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S0WN95_9CHLO8.080e-2853.47Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
L8GQG3_ACACA1.720e-2752.94Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A397UNM2_9GLOM2.420e-2751.96Transmembrane adaptor Erv26 (Fragment) n=1 Tax=Gig... [more]
A0A8H7UAC2_9FUNG1.110e-2654.46Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A068RW46_9FUNG2.780e-2653.47Duf396 domain protein n=2 Tax=Lichtheimia TaxID=68... [more]
A0A138ZYS2_GONPJ3.260e-2650.00DUF396-domain-containing protein n=1 Tax=Gonapodya... [more]
A0A163ISS4_ABSGL1.130e-2551.40Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A8H7V241_9FUNG1.280e-2550.49Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]
A0A507DG70_9FUNG1.470e-2552.48Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120377contigM-pyrifera_M_contig120377:2..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.4
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog109760.SPPG_02207T0
Preferred nameSVP26
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0019538,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0030674,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031505,GO:0031982,GO:0031984,GO:0032507,GO:0033036,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045185,GO:0045229,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0060090,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0097020,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.to Saccharomyces cerevisiae SVP26 (YHR181W)
EggNOG OGs38D6K@33154,3P13K@4751,KOG4136@1,KOG4136@2759
COG Functional cat.IT
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.1082256-CDS-M-pyrifera_M_contig120377:1..1531622815723.1082256-CDS-M-pyrifera_M_contig120377:1..153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120377 2..153 -
1692277538.72503-CDS-M-pyrifera_M_contig120377:1..1531692277538.72503-CDS-M-pyrifera_M_contig120377:1..153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120377 2..153 -
1622815723.1189492-CDS-M-pyrifera_M_contig120377:211..3681622815723.1189492-CDS-M-pyrifera_M_contig120377:211..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120377 212..368 -
1692277538.7341323-CDS-M-pyrifera_M_contig120377:211..3681692277538.7341323-CDS-M-pyrifera_M_contig120377:211..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120377 212..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120377.4200.1prot_M-pyrifera_M_contig120377.4200.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120377 2..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120377.4200.1

>prot_M-pyrifera_M_contig120377.4200.1 ID=prot_M-pyrifera_M_contig120377.4200.1|Name=mRNA_M-pyrifera_M_contig120377.4200.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
QVVVGVHVLLLVLDDMPVLQLLFSTAVQVVYYQLLRKFPVIELTDAWFLA
SCACAVINHCLWFVYFGSHYYPFKEILAFFFICVWMIPFGFFISLSANES
ALP
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mRNA from alignment at M-pyrifera_M_contig120377:2..368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120377.4200.1 ID=mRNA_M-pyrifera_M_contig120377.4200.1|Name=mRNA_M-pyrifera_M_contig120377.4200.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=367bp|location=Sequence derived from alignment at M-pyrifera_M_contig120377:2..368- (Macrocystis pyrifera P11B4 male)
CAGGTGGTTGTTGGGGTGCACGTTCTCCTGCTGGTGCTCGACGACATGCC
TGTGCTGCAGCTGCTCTTCAGCACAGCGGTGCAGGTGGTCTACTACCAGC
TGCTGCGCAAGTTCCCTGTCATAGAGCTGACTGACGCTTGGTTTCTAGCC
AGCTGCGGTACGTTAATGCCCTATCCAAACACTCCATTGCTGAGCTGACG
ATAGTCGTCACGCAGCTTGTGCGGTGATCAACCACTGCCTCTGGTTCGTC
TATTTTGGCAGCCACTATTACCCTTTCAAGGAGATACTGGCGTTCTTCTT
CATCTGTGTGTGGATGATTCCCTTTGGCTTTTTCATTTCGCTGTCTGCCA
ATGAGAGTGCACTGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120377:2..368-

>mRNA_M-pyrifera_M_contig120377.4200.1 ID=mRNA_M-pyrifera_M_contig120377.4200.1|Name=mRNA_M-pyrifera_M_contig120377.4200.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig120377:2..368- (Macrocystis pyrifera P11B4 male)
CAGGTGGTTGTTGGGGTGCACGTTCTCCTGCTGGTGCTCGACGACATGCC
TGTGCTGCAGCTGCTCTTCAGCACAGCGGTGCAGGTGGTCTACTACCAGC
TGCTGCGCAAGTTCCCTGTCATAGAGCTGACTGACGCTTGGTTTCTAGCC
AGCTGCGCAGGTGGTTGTTGGGGTGCACGTTCTCCTGCTGGTGCTCGACG
ACATGCCTGTGCTGCAGCTGCTCTTCAGCACAGCGGTGCAGGTGGTCTAC
TACCAGCTGCTGCGCAAGTTCCCTGTCATAGAGCTGACTGACGCTTGGTT
TCTAGCCAGCTGCGCTTGTGCGGTGATCAACCACTGCCTCTGGTTCGTCT
ATTTTGGCAGCCACTATTACCCTTTCAAGGAGATACTGGCGTTCTTCTTC
ATCTGTGTGTGGATGATTCCCTTTGGCTTTTTCATTTCGCTGTCTGCCAA
TGAGAGTGCACTGCCGCTTGTGCGGTGATCAACCACTGCCTCTGGTTCGT
CTATTTTGGCAGCCACTATTACCCTTTCAAGGAGATACTGGCGTTCTTCT
TCATCTGTGTGTGGATGATTCCCTTTGGCTTTTTCATTTCGCTGTCTGCC
AATGAGAGTGCACTGCCG
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