mRNA_M-pyrifera_M_contig120375.4199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120375.4199.1
Unique NamemRNA_M-pyrifera_M_contig120375.4199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: L8GTG9_ACACA (Glycosyl hydrolase, family 31 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GTG9_ACACA)

HSP 1 Score: 99.0 bits (245), Expect = 1.140e-22
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDN--ETVSIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            LF+RWAQMGAF  LMENGGD  H PW+FDN  +TV IYR FV IH EL PY L+AGSTA E G+SV+
Sbjct:  307 LFLRWAQMGAFTPLMENGGDNQHRPWMFDNTNQTVDIYRAFVHIHTELLPYFLNAGSTAYEQGVSVI 373          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: UPI00096B4C9D (alpha-xylosidase-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B4C9D)

HSP 1 Score: 95.9 bits (237), Expect = 1.400e-21
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETVSIYRTFVDIHYELRPYLLHAGSTAMENGIS 189
            LFIRWAQ+G+F+ LMENGG+  H PW FDNET++IYR FVDIHY+L PYLL  G+ A+E  +S
Sbjct:  304 LFIRWAQLGSFSPLMENGGNKEHRPWTFDNETLNIYRKFVDIHYQLVPYLLSVGTKAIETNVS 366          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A1X7VEN9_AMPQE (PH domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VEN9_AMPQE)

HSP 1 Score: 95.9 bits (237), Expect = 1.440e-21
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETVSIYRTFVDIHYELRPYLLHAGSTAMENGIS 189
            LFIRWAQ+G+F+ LMENGG+  H PW FDNET++IYR FVDIHY+L PYLL  G+ A+E  +S
Sbjct:  863 LFIRWAQLGSFSPLMENGGNKEHRPWTFDNETLNIYRKFVDIHYQLVPYLLSVGTKAIETNVS 925          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A6A5BY59_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BY59_NAEFO)

HSP 1 Score: 92.0 bits (227), Expect = 3.190e-20
Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETV---SIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            LFIRW QMGAFNSLMENGGDG HEPW +D+ T+   SIYR FV IHYEL P+L   G  A  N  S+M
Sbjct:  303 LFIRWFQMGAFNSLMENGGDGPHEPWNYDDATINVTSIYRKFVHIHYELNPFLYSTGIAAYNNHQSIM 370          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A0V0QT81_PSEPJ (Glycoside hydrolase, superfamily n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QT81_PSEPJ)

HSP 1 Score: 90.1 bits (222), Expect = 4.340e-20
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETVSIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            +FIRWAQ+GA N LMENGG G HEPW +D ETV IY+ FV+IHYEL P+   +GS A E   SVM
Sbjct:  195 VFIRWAQLGALNPLMENGGGGNHEPWAWDGETVEIYKKFVNIHYELFPFFYASGSQAFEKQKSVM 259          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A0D2U3J3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U3J3_CAPO3)

HSP 1 Score: 89.4 bits (220), Expect = 2.840e-19
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLF---DNETVSIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            + +RWAQ+GAF  LMENGGDG H PW F   DN T  IYRTFVD HYE+ PYLL  G+ A  +G S+M
Sbjct:  330 VLLRWAQLGAFVGLMENGGDGEHRPWGFNPTDNSTTDIYRTFVDAHYEIAPYLLSLGAQAYASGSSIM 397          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A6B2L112_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L112_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 3.760e-19
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDN----ETVSIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            +F+RWAQ+GAF  LMENGG G H PWLFD     +T  IYR FV+IH  L+PY L AGS+A E+G+SV+
Sbjct:  264 VFLRWAQLGAFLPLMENGGGGNHFPWLFDTGNSTQTTDIYRNFVNIHVSLKPYFLSAGSSAFESGVSVI 332          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: UPI001CFF4D70 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF4D70)

HSP 1 Score: 87.0 bits (214), Expect = 1.840e-18
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETV---SIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            +FIRW QMGAFNSLMENGGDG HEPW +D+ T    SIYR +V IHYEL P+    G  A  N  S+M
Sbjct:  315 VFIRWFQMGAFNSLMENGGDGPHEPWNYDDATTNVTSIYRKYVHIHYELNPFFYSTGIAAYNNHQSIM 382          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: A0A0L0DKE0_THETB (Alpha-glucosidase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKE0_THETB)

HSP 1 Score: 86.3 bits (212), Expect = 3.430e-18
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFD--NETVSIYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            LF RW QMGAF SLMENGGD  H PW+F   N T+  YR FV IHYEL PYLL AG+ A  +G S+M
Sbjct:  318 LFTRWFQMGAFCSLMENGGDNQHRPWMFGSGNATLDTYRVFVHIHYELVPYLLSAGTQAWIDGSSIM 384          
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Match: D2VNX9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VNX9_NAEGR)

HSP 1 Score: 85.9 bits (211), Expect = 4.690e-18
Identity = 40/68 (58.82%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 LFIRWAQMGAFNSLMENGGDGVHEPWLFDNETVS---IYRTFVDIHYELRPYLLHAGSTAMENGISVM 195
            L+IRW QMG FN LMENGG+GVHEPW +D  +++   IYR +V IHYEL PYL  AG  A  N  S+M
Sbjct:  317 LYIRWFQMGTFNGLMENGGNGVHEPWGYDTPSLNVTNIYRRYVHIHYELNPYLYSAGINAYANDKSIM 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120375.4199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GTG9_ACACA1.140e-2268.66Glycosyl hydrolase, family 31 protein n=1 Tax=Acan... [more]
UPI00096B4C9D1.400e-2165.08alpha-xylosidase-like n=1 Tax=Amphimedon queenslan... [more]
A0A1X7VEN9_AMPQE1.440e-2165.08PH domain-containing protein n=1 Tax=Amphimedon qu... [more]
A0A6A5BY59_NAEFO3.190e-2064.71Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A0V0QT81_PSEPJ4.340e-2063.08Glycoside hydrolase, superfamily n=1 Tax=Pseudocoh... [more]
A0A0D2U3J3_CAPO32.840e-1960.29Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A6B2L112_9EUKA3.760e-1959.42Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
UPI001CFF4D701.840e-1860.29uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A0L0DKE0_THETB3.430e-1862.69Alpha-glucosidase n=1 Tax=Thecamonas trahens ATCC ... [more]
D2VNX9_NAEGR4.690e-1858.82Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120375contigM-pyrifera_M_contig120375:218..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.7
Seed ortholog evalue4.9e-13
Seed eggNOG ortholog192875.XP_004349717.1
KEGG koko:K01811
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Glycosyl hydrolases family 31
EggNOG OGs3AJ9M@33154,COG1501@1,KOG1066@2759
EC3.2.1.177
COG Functional cat.G
CAZyGH31
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size195
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.0638402-CDS-M-pyrifera_M_contig120375:217..3911622815723.0638402-CDS-M-pyrifera_M_contig120375:217..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120375 218..391 -
1692277538.6976435-CDS-M-pyrifera_M_contig120375:217..3911692277538.6976435-CDS-M-pyrifera_M_contig120375:217..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120375 218..391 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.0743113-UTR-M-pyrifera_M_contig120375:391..4121622815723.0743113-UTR-M-pyrifera_M_contig120375:391..412Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120375 392..412 -
1692277538.7153833-UTR-M-pyrifera_M_contig120375:391..4121692277538.7153833-UTR-M-pyrifera_M_contig120375:391..412Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120375 392..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120375.4199.1prot_M-pyrifera_M_contig120375.4199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120375 218..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120375.4199.1

>prot_M-pyrifera_M_contig120375.4199.1 ID=prot_M-pyrifera_M_contig120375.4199.1|Name=mRNA_M-pyrifera_M_contig120375.4199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MGAFNSLMENGGDGVHEPWLFDNETVSIYRTFVDIHYELRPYLLHAGSTA
MENGISVM
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mRNA from alignment at M-pyrifera_M_contig120375:218..412-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120375.4199.1 ID=mRNA_M-pyrifera_M_contig120375.4199.1|Name=mRNA_M-pyrifera_M_contig120375.4199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig120375:218..412- (Macrocystis pyrifera P11B4 male)
CTCTTCATCCGCTGGGCCCAAATGGGGGCCTTCAACTCCCTCATGGAGAA CGGCGGCGACGGCGTCCACGAGCCCTGGCTCTTCGACAACGAAACGGTCT CCATCTACCGCACCTTCGTGGACATCCACTACGAACTGCGCCCCTACCTC CTCCACGCCGGCTCCACCGCCATGGAGAACGGCATCTCCGTCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120375:218..412-

>mRNA_M-pyrifera_M_contig120375.4199.1 ID=mRNA_M-pyrifera_M_contig120375.4199.1|Name=mRNA_M-pyrifera_M_contig120375.4199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig120375:218..412- (Macrocystis pyrifera P11B4 male)
ATGGGGGCCTTCAACTCCCTCATGGAGAACGGCGGCGACGGCGTCCACGA
GCCCTGGCTCTTCGACAACGAAACGGTCTCCATCTACCGCACCTTCGTGG
ACATCCACTACGAACTGCGCCCCTACCTCCTCCACGCCGGCTCCACCGCC
ATGGAGAACGGCATCTCCGTCATGATGGGGGCCTTCAACTCCCTCATGGA
GAACGGCGGCGACGGCGTCCACGAGCCCTGGCTCTTCGACAACGAAACGG
TCTCCATCTACCGCACCTTCGTGGACATCCACTACGAACTGCGCCCCTAC
CTCCTCCACGCCGGCTCCACCGCCATGGAGAACGGCATCTCCGTCATG
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