mRNA_M-pyrifera_M_contig120351.4192.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120351.4192.1
Unique NamemRNA_M-pyrifera_M_contig120351.4192.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120351.4192.1 vs. uniprot
Match: F0ZYT6_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZYT6_DICPU)

HSP 1 Score: 71.2 bits (173), Expect = 7.000e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   34 VICFGGALIPTRLVALLKGRGNVLSYANCLGAGILLGASFVHLLTDAEDVDDPDAIELPPYFTHMVAGVGFLLSFSLEKVIFGHS 288
            V+CF G + P  L        N++S+++CLG GILLGAS +HLL D+E+       E P  F+H++  +GF  SF LE+V+F HS
Sbjct:   15 VVCFVGGISPIILGKFCNSSKNIVSFSSCLGGGILLGASLLHLLNDSEEFLKG---EYP--FSHLIYALGFFASFILERVLFEHS 94
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BLAST of mRNA_M-pyrifera_M_contig120351.4192.1 vs. uniprot
Match: A0A151Z6P7_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6P7_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 6.650e-10
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   34 VICFGGALIPTRLVALLKGRGNVLSYANCLGAGILLGASFVHLLTDAEDVDDPDAIELPPYFTHMVAGVGFLLSFSLEKVIFGH 285
            +ICF G +IP       K     LSY+NCLGAGILLGASF+H+L+++E      + + P   +H+   +GF  SF LE+++F H
Sbjct:   16 IICFIGGIIPK----YFKNNAKALSYSNCLGAGILLGASFLHILSESET---KISNQFPS--SHLFYFIGFFGSFILERILFEH 90
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BLAST of mRNA_M-pyrifera_M_contig120351.4192.1 vs. uniprot
Match: A0A8J4V762_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V762_9MYCE)

HSP 1 Score: 63.5 bits (153), Expect = 5.810e-9
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   34 VICFGGALIPTRLVALLKGRGNV-LSYANCLGAGILLGASFVHLLTDAEDVDDPDAIELPPYFTHMVAGVGFLLSFSLEKVIFGH 285
            V C  G L P   +   K  G   LSY+NCLG+GIL+GASF+HLL D++++ + D  + P   +++   +GF LSF LE+V+F H
Sbjct:   15 VACAVGGLAP---LIFKKWFGEKSLSYSNCLGSGILIGASFIHLLKDSQELLE-DQYDFP--LSNLFCAIGFFLSFILERVLFEH 93
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BLAST of mRNA_M-pyrifera_M_contig120351.4192.1 vs. uniprot
Match: A0A2J6IES3_9BACT (Uncharacterized protein n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2J6IES3_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 9.910e-6
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   28 AGVICFGGALIPTRLVALLKGRGNVLSYANCLGAGILLGASFVHLLTDAEDVDDPDAIELPPYFTHMVAGVGFLLSFSLEKVI 276
            AGV+   G  IP  L   L   GN LS+ N    G+ LGA F+H+L DA        + +   F  M+AG+GF+L  SLE+VI
Sbjct:   23 AGVL---GGFIP--LGKKLTVGGNGLSFGNAFAGGVFLGAGFMHMLPDANSNFQLLKLNIDFPFAEMIAGLGFILILSLERVI 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120351.4192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0ZYT6_DICPU7.000e-1243.53Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A151Z6P7_9MYCE6.650e-1042.86Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A8J4V762_9MYCE5.810e-943.53Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A2J6IES3_9BACT9.910e-640.96Uncharacterized protein n=1 Tax=Marinilabiliales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120351contigM-pyrifera_M_contig120351:92..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog5786.XP_003292580.1
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting categorysignal peptide
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662
EggNOG free text desc.zinc transporter
EggNOG OGs3X9BG@554915,KOG1558@1,KOG1558@2759
COG Functional cat.P
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.7704792-CDS-M-pyrifera_M_contig120351:91..5381622815722.7704792-CDS-M-pyrifera_M_contig120351:91..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120351 92..538 +
1692277538.5741935-CDS-M-pyrifera_M_contig120351:91..5381692277538.5741935-CDS-M-pyrifera_M_contig120351:91..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120351 92..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120351.4192.1prot_M-pyrifera_M_contig120351.4192.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120351 92..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120351.4192.1

>prot_M-pyrifera_M_contig120351.4192.1 ID=prot_M-pyrifera_M_contig120351.4192.1|Name=mRNA_M-pyrifera_M_contig120351.4192.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
LFKTLAAVGAGVICFGGALIPTRLVALLKGRGNVLSYANCLGAGILLGAS
FVHLLTDAEDVDDPDAIELPPYFTHMVAGVGFLLSFSLEKVIFGHSHSHA
HLPASDAHHHHHRDGENHEHHHNHDVELEELGAAVVEEEEPAHDHGHGH
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mRNA from alignment at M-pyrifera_M_contig120351:92..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120351.4192.1 ID=mRNA_M-pyrifera_M_contig120351.4192.1|Name=mRNA_M-pyrifera_M_contig120351.4192.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig120351:92..538+ (Macrocystis pyrifera P11B4 male)
CTCTTCAAGACGCTGGCTGCGGTCGGCGCTGGAGTGATTTGCTTTGGAGG
CGCACTCATCCCCACGCGGCTGGTGGCGCTGCTCAAGGGCAGGGGCAACG
TGCTGTCCTATGCCAACTGCCTGGGCGCCGGCATTCTCCTGGGTGCCAGC
TTTGTTCACCTCCTCACAGACGCAGAGGACGTGGACGACCCCGATGCCAT
TGAGCTGCCGCCCTACTTCACCCACATGGTGGCAGGCGTGGGCTTCCTGC
TGTCCTTTTCGCTGGAGAAGGTCATCTTCGGCCATTCCCACTCCCACGCC
CACCTCCCTGCCTCGGACGCACACCACCACCACCACAGGGACGGCGAGAA
CCACGAGCACCACCACAACCACGACGTGGAGCTCGAGGAGCTCGGCGCCG
CCGTAGTGGAGGAGGAGGAGCCCGCCCACGACCACGGCCACGGCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120351:92..538+

>mRNA_M-pyrifera_M_contig120351.4192.1 ID=mRNA_M-pyrifera_M_contig120351.4192.1|Name=mRNA_M-pyrifera_M_contig120351.4192.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig120351:92..538+ (Macrocystis pyrifera P11B4 male)
CTCTTCAAGACGCTGGCTGCGGTCGGCGCTGGAGTGATTTGCTTTGGAGG
CGCACTCATCCCCACGCGGCTGGTGGCGCTGCTCAAGGGCAGGGGCAACG
TGCTGTCCTATGCCAACTGCCTGGGCGCCGGCATTCTCCTGGGTGCCAGC
TTTGTTCACCTCCTCACAGACGCAGAGGACGTGGACGACCCCGATGCCAT
TGAGCTGCCGCCCTACTTCACCCACATGGTGGCAGGCGTGGGCTTCCTGC
TGTCCTTTTCGCTGGAGAAGGTCATCTTCGGCCATTCCCACTCCCACGCC
CACCTCCCTGCCTCGGACGCACACCACCACCACCACAGGGACGGCGAGAA
CCACGAGCACCACCACAACCACGACGTGGAGCTCGAGGAGCTCGGCGCCG
CCGTAGTGGAGGAGGAGGAGCCCGCCCACGACCACGGCCACGGCCACCTC
TTCAAGACGCTGGCTGCGGTCGGCGCTGGAGTGATTTGCTTTGGAGGCGC
ACTCATCCCCACGCGGCTGGTGGCGCTGCTCAAGGGCAGGGGCAACGTGC
TGTCCTATGCCAACTGCCTGGGCGCCGGCATTCTCCTGGGTGCCAGCTTT
GTTCACCTCCTCACAGACGCAGAGGACGTGGACGACCCCGATGCCATTGA
GCTGCCGCCCTACTTCACCCACATGGTGGCAGGCGTGGGCTTCCTGCTGT
CCTTTTCGCTGGAGAAGGTCATCTTCGGCCATTCCCACTCCCACGCCCAC
CTCCCTGCCTCGGACGCACACCACCACCACCACAGGGACGGCGAGAACCA
CGAGCACCACCACAACCACGACGTGGAGCTCGAGGAGCTCGGCGCCGCCG
TAGTGGAGGAGGAGGAGCCCGCCCACGACCACGGCCACGGCCAC
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