mRNA_M-pyrifera_M_contig120348.4189.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00190497B2 (carbohydrate binding domain-containing protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI00190497B2) HSP 1 Score: 67.8 bits (164), Expect = 3.510e-11 Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 46 GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
G W+HLA ++DG W+RL+V+GA +A SG L DV VP +GN +GFDG +D V +
Sbjct: 1873 GEWTHLAASYDGNWIRLYVNGAFDSAIAMSGDLVQDVSVPAAIGNQPHGGKGFDGLIDDVQI 1934
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A518ERP4_9BACT (Quinoprotein glucose dehydrogenase B n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERP4_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 1.430e-9 Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 52 WSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
W+ +A T+DGA +R+++DG EV ++A SG ++T VP +GN ++DR FDG +D+V +
Sbjct: 725 WTFVAATYDGARMRMYLDGTEVGSMAKSGAISTSPSVPAAIGNQPASDRPFDGLIDEVRI 784
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A2V7J8R7_9BACT (LamGL domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7J8R7_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 4.970e-9 Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query: 43 IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSA 252
+ TW+HLAVT+DGA +RLFV+G +V+T AA+G+L T PL +GN + F G++D V + + A++A
Sbjct: 102 VNTWTHLAVTYDGATLRLFVNGTQVNTTAATGSLQTGT-TPLRIGNNTYGE-SFQGRIDDVRIYNRAQTA 169
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A366LSU3_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=Spongiactinospora TaxID=2871671 RepID=A0A366LSU3_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 5.120e-9 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query: 13 PVEVRGGSTT-IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVAT 267
P V G S +GTWSH+A+T+DGA +RLFV+GA+ A SG L +D PL +G A+ F G +D+V V + A+SA + T
Sbjct: 934 PTTVNGASPLPVGTWSHVALTYDGAALRLFVNGAQAGQTALSGGLHSDGS-PLRIGGNAAWGEFFGGLIDEVRVYNRAQSATEIQT 1018
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00178674CC (DUF1349 domain-containing protein n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI00178674CC) HSP 1 Score: 60.8 bits (146), Expect = 9.700e-9 Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 7 AGPVEVRGGSTTI--GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVA 264
AG G+T + G W H+A+ +DG+++RL+++G + G +A + VP+ +GN RGFDG +D+V + VA AE +A
Sbjct: 951 AGATRTLLGATDLVAGEWMHVAMVYDGSFIRLYLNGVLDSELEHGGEIAQNANVPVAIGNQPQGGRGFDGLIDEVKIYSVAYDAEGIA 1038
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00200D3436 (LamG domain-containing protein n=1 Tax=Halocatena sp. DFN5 TaxID=2934937 RepID=UPI00200D3436) HSP 1 Score: 60.5 bits (145), Expect = 1.240e-8 Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 19 EVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNL-ASADRGF-DGQVDQVHV 231
+V GGS T G+W HLAVT+DG++++L+VDG EVD+VA SG+ ++ ++ + A+ + G+ G++D++ +
Sbjct: 149 KVTGGSPTTGSWIHLAVTYDGSFLKLYVDGTEVDSVATSGSFDSENVIQVGTDEANANDNHGYWKGRIDELRI 221
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI0019D40AD5 (PKD domain-containing protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D40AD5) HSP 1 Score: 60.1 bits (144), Expect = 1.750e-8 Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 10 GPVEVRGGSTTI---------GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASAD-RGFDGQVDQVHV 231
G V V G +TT+ G W H A+T++GA +RL++DG V + A SGT+ TD +P+ +G+ + R FDG +D VH+
Sbjct: 223 GRVRVGGRTTTLIASSGDIGAGNWHHAALTYNGASLRLYLDGQVVGSTALSGTIDTDASMPVAIGSQPLGNTRWFDGLIDGVHI 306
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A0B7IYV6_9PROT (MotA/TolQ/ExbB proton channel n=1 Tax=Candidatus Methylopumilus turicensis TaxID=1581680 RepID=A0A0B7IYV6_9PROT) HSP 1 Score: 59.7 bits (143), Expect = 2.310e-8 Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 1 LGAGPVEVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWV 261
L AG +V GG TW H+A+T DG L+++G V T LA D + VG+ F G++D++ +A+VARSAEW+
Sbjct: 229 LNAGAAKVAGGELKAATWQHVALTVDGTKANLYINGISVAT---GDVLAADASSNIKVGD------AFTGEIDEMQMANVARSAEWL 306
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A7Y6CTY7_9ACTN (Fibronectin type-III domain-containing protein n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=A0A7Y6CTY7_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 3.280e-8 Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 43 IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
+G+WSH+AVT+DGA +RL+V+GA+ +AA+G+LAT P +G S F+G +D+V +
Sbjct: 350 VGSWSHVAVTYDGATLRLYVNGAQASQLAAAGSLATSTS-PFHIGGNGSWGEWFNGSIDEVRL 411
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A524CK69_9ARCH (LamG domain-containing protein (Fragment) n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524CK69_9ARCH) HSP 1 Score: 59.3 bits (142), Expect = 3.330e-8 Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 31 GSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVATAHAN 279
G + TW H+A+TWDG V LF+DG EV G+ V ++G++A+ R FDG + +V + A +W+ T + N
Sbjct: 288 GGIGVNTWHHIALTWDGYNVELFIDGNEVAHTTNQGSNFEYSSVDAIIGDIANKLRPFDGMISEVRILDEALHDDWIKTEYRN 370 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120348.4189.1 >prot_M-pyrifera_M_contig120348.4189.1 ID=prot_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp LGAGPVEVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATback to top mRNA from alignment at M-pyrifera_M_contig120348:173..451- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120348.4189.1 ID=mRNA_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig120348:173..451- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120348:173..451- >mRNA_M-pyrifera_M_contig120348.4189.1 ID=mRNA_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig120348:173..451- (Macrocystis pyrifera P11B4 male)back to top |