mRNA_M-pyrifera_M_contig120271.4187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120271.4187.1
Unique NamemRNA_M-pyrifera_M_contig120271.4187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A5A8EHJ5_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHJ5_CAFRO)

HSP 1 Score: 88.2 bits (217), Expect = 1.930e-18
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    4 RLEEDAY-DLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFED 261
            R+ EDA  DLEV+LE++  LA++VRQ+A  +L  MD RQ +L + LDA RNHLID+++R++ + LGV+ GTL + LFGMNL +G E+
Sbjct:  402 RVHEDALLDLEVMLETHLRLAADVRQQAQQMLRHMDTRQAILGSTLDAYRNHLIDINLRMTIIGLGVSFGTLASGLFGMNLYNGLEE 488
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A812J885_9DINO (Dbp9 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812J885_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 2.580e-15
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    4 RLEEDAY-DLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFG------------MNLVHGFED 261
            R+ EDA  DLEV+LE++  LA++VRQ+A  +L  MD RQ +L + LDA RNHLID+++R++ + LGV+ GTL + LFG            MNL +G E+
Sbjct: 1253 RVHEDALLDLEVMLETHLRLAADVRQQAQQMLRHMDTRQAILGSTLDAYRNHLIDINLRMTIIGLGVSFGTLASGLFGERSRERAKATCGMNLYNGLEE 1351
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A0C3BRH4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3BRH4_9AGAM)

HSP 1 Score: 69.7 bits (169), Expect = 7.480e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    4 RLEEDAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDA 264
            R E +  +LEVLLES++    E+  E+   +  + A Q++++  LDA RN+L+ +D+++S +T+G+  G L   LFGMNL +G ED+
Sbjct:   29 RPESEHDELEVLLESFSKQVEEIVNESETTMHNVSATQEIVELILDANRNNLLALDLKVSIMTMGLGAGALFAGLFGMNLANGMEDS 115
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A0D2LGT3_HYPSF (Magnesium transporter n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2LGT3_HYPSF)

HSP 1 Score: 71.6 bits (174), Expect = 1.150e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:   25 DLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            +LEVLLES++    E+  EA  L   + A Q++++  LDA RN L+ +D+++S LTLGV  G LV  LFGMNL++  E AP
Sbjct:  255 ELEVLLESFSKQVEEIVNEAEGLEHNVQATQEIVELVLDANRNALLALDLKVSILTLGVGAGALVAGLFGMNLLNHAEHAP 335
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: G7E2P9_MIXOS (Magnesium transporter n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E2P9_MIXOS)

HSP 1 Score: 68.2 bits (165), Expect = 2.040e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RRLEEDAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            RR  +D  ++E+LLESY   A E+  E   L+  +   Q +++  LDA RN L+ +D+++S  T+G+  G L+T   GMNL  G E  P
Sbjct:  334 RRTTDDHSEIEMLLESYGKQAEEIVSEVDGLVANVSQTQDVIELILDARRNALLALDLKVSIATMGLGSGALITGALGMNLATGLESDP 422
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A0D2BF99_9EURO (Magnesium transporter n=1 Tax=Exophiala spinifera TaxID=91928 RepID=A0A0D2BF99_9EURO)

HSP 1 Score: 67.8 bits (164), Expect = 2.760e-11
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   16 DAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            D  + E +LE+Y   A  + + ASA +  M  ++   ++ LD  RN ++ ++ +++  TLGVA GTL+  LFGMNL++ FEDAP
Sbjct:  320 DHQEAEYMLEAYHTAADALVESASAAMDVMRKKENTFRSSLDVQRNQIMFLEAKVAIHTLGVAAGTLIAGLFGMNLINYFEDAP 403
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A0D2GHG4_9EURO (Magnesium transporter n=1 Tax=Phialophora americana TaxID=5601 RepID=A0A0D2GHG4_9EURO)

HSP 1 Score: 67.4 bits (163), Expect = 3.890e-11
Identity = 34/89 (38.20%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 RRLEEDAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            +R E D  ++E+LLESY  +  E+ + +  L+G +   +++++  LDA RN L+ ++++ S  TLG+AGGTL+  L+GMNL +  E+ P
Sbjct:  334 QRAENDHQEVEMLLESYHKICDEIVEISGNLIGNIRNTEEVVRAILDANRNQLMLLEIKFSIGTLGLAGGTLIAGLYGMNLNNFIEETP 422
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A0C9UVE3_SPHS4 (Magnesium transporter n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9UVE3_SPHS4)

HSP 1 Score: 66.6 bits (161), Expect = 6.480e-11
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   16 DAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            D  +LEVLLES+A    E+  EA  + G + + Q++++  LDA RN L+ +D+++S  T+G+  G L   LFGMNL    E+ P
Sbjct:  230 DHEELEVLLESFAKQVEEIVNEAETISGNVQSTQEIVELILDANRNALLALDLKVSIGTMGIGIGALAAGLFGMNLTSHLEEVP 313
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BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: G4TDI9_SERID (Related to LPE10-strong similarity to Mrs2p n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TDI9_SERID)

HSP 1 Score: 63.2 bits (152), Expect = 9.640e-11
Identity = 31/85 (36.47%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   10 EEDAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDA 264
            E D  +LEVLLES++    E+  E+   +  + + Q++++  LDA RN+L+ +D+++S  T+G+  G L   LFGMNL +  E++
Sbjct:   14 EPDHEELEVLLESFSKQVEEIVNESETTMANISSTQEIVELILDANRNNLLALDLKVSIATMGLGAGALFAGLFGMNLRNEMEES 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Match: A0A177ULI9_9BASI (Magnesium transporter (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177ULI9_9BASI)

HSP 1 Score: 66.2 bits (160), Expect = 9.940e-11
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   25 DLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMRNHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP 267
            +LE+LLES+     EV  EA ++   +   Q++++  LD+ RN L+++D+R S  TL V+ GTLV+ LFGMNLV+  E  P
Sbjct:  263 ELELLLESFEKQVEEVVSEAESMASNIQNTQEVVELILDSNRNDLLNLDLRTSLTTLAVSSGTLVSGLFGMNLVNYLESNP 343
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120271.4187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EHJ5_CAFRO1.930e-1852.87Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A812J885_9DINO2.580e-1546.46Dbp9 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A0C3BRH4_9AGAM7.480e-1339.08Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A0D2LGT3_HYPSF1.150e-1246.91Magnesium transporter n=1 Tax=Hypholoma sublaterit... [more]
G7E2P9_MIXOS2.040e-1138.20Magnesium transporter n=1 Tax=Mixia osmundae (stra... [more]
A0A0D2BF99_9EURO2.760e-1139.29Magnesium transporter n=1 Tax=Exophiala spinifera ... [more]
A0A0D2GHG4_9EURO3.890e-1138.20Magnesium transporter n=1 Tax=Phialophora american... [more]
A0A0C9UVE3_SPHS46.480e-1140.48Magnesium transporter n=1 Tax=Sphaerobolus stellat... [more]
G4TDI9_SERID9.640e-1136.47Related to LPE10-strong similarity to Mrs2p n=1 Ta... [more]
A0A177ULI9_9BASI9.940e-1143.21Magnesium transporter (Fragment) n=2 Tax=Tilletia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120271contigM-pyrifera_M_contig120271:265..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.7
Seed ortholog evalue7.8e-10
Seed eggNOG ortholog34349.G7E2P9
Preferred nameMRS2
KEGG koko:K16075
KEGG TC1.A.35.5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0008150,GO:0008324,GO:0015075,GO:0015095,GO:0015318,GO:0015693,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:1903830,GO:1990542
EggNOG free text desc.Inner membrane magnesium transporter MRS2
EggNOG OGs2YDY1@29000,38EKJ@33154,3NWQA@4751,3UZM2@5204,KOG2662@1,KOG2662@2759
COG Functional cat.P
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.4359627-CDS-M-pyrifera_M_contig120271:264..5311622815722.4359627-CDS-M-pyrifera_M_contig120271:264..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120271 265..531 +
1692277538.3327005-CDS-M-pyrifera_M_contig120271:264..5311692277538.3327005-CDS-M-pyrifera_M_contig120271:264..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120271 265..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120271.4187.1prot_M-pyrifera_M_contig120271.4187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120271 265..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120271.4187.1

>prot_M-pyrifera_M_contig120271.4187.1 ID=prot_M-pyrifera_M_contig120271.4187.1|Name=mRNA_M-pyrifera_M_contig120271.4187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
RRLEEDAYDLEVLLESYAALASEVRQEASALLGQMDARQQLLQTELDAMR
NHLIDVDVRISFLTLGVAGGTLVTSLFGMNLVHGFEDAP
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mRNA from alignment at M-pyrifera_M_contig120271:265..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120271.4187.1 ID=mRNA_M-pyrifera_M_contig120271.4187.1|Name=mRNA_M-pyrifera_M_contig120271.4187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig120271:265..531+ (Macrocystis pyrifera P11B4 male)
CGCCGCTTGGAGGAGGACGCGTATGACCTGGAGGTGTTGCTGGAGTCGTA
CGCTGCGCTGGCGAGCGAGGTGCGGCAAGAGGCGAGTGCCTTGTTGGGTC
AGATGGACGCTCGTCAGCAGTTGTTGCAGACCGAGTTGGACGCAATGCGC
AACCACTTGATTGACGTGGATGTCCGCATTTCTTTCCTGACACTAGGGGT
GGCTGGAGGCACGCTTGTGACGAGTCTCTTTGGGATGAACTTGGTGCATG
GCTTTGAAGATGCGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120271:265..531+

>mRNA_M-pyrifera_M_contig120271.4187.1 ID=mRNA_M-pyrifera_M_contig120271.4187.1|Name=mRNA_M-pyrifera_M_contig120271.4187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig120271:265..531+ (Macrocystis pyrifera P11B4 male)
CGCCGCTTGGAGGAGGACGCGTATGACCTGGAGGTGTTGCTGGAGTCGTA
CGCTGCGCTGGCGAGCGAGGTGCGGCAAGAGGCGAGTGCCTTGTTGGGTC
AGATGGACGCTCGTCAGCAGTTGTTGCAGACCGAGTTGGACGCAATGCGC
AACCACTTGATTGACGTGGATGTCCGCATTTCTTTCCTGACACTAGGGGT
GGCTGGAGGCACGCTTGTGACGAGTCTCTTTGGGATGAACTTGGTGCATG
GCTTTGAAGATGCGCCTCGCCGCTTGGAGGAGGACGCGTATGACCTGGAG
GTGTTGCTGGAGTCGTACGCTGCGCTGGCGAGCGAGGTGCGGCAAGAGGC
GAGTGCCTTGTTGGGTCAGATGGACGCTCGTCAGCAGTTGTTGCAGACCG
AGTTGGACGCAATGCGCAACCACTTGATTGACGTGGATGTCCGCATTTCT
TTCCTGACACTAGGGGTGGCTGGAGGCACGCTTGTGACGAGTCTCTTTGG
GATGAACTTGGTGCATGGCTTTGAAGATGCGCCT
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