mRNA_M-pyrifera_M_contig120248.4182.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120248.4182.1
Unique NamemRNA_M-pyrifera_M_contig120248.4182.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A7S4KWC7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KWC7_GUITH)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-12
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFFRTHRCSHLCKLLDLPKHPLQP 168
            ++ILTD AIHC++T RFGGTN G EGM  FF  H+C+ +C+ L L  H   P
Sbjct:   77 EFILTDPAIHCKNTDRFGGTNLGVEGMNLFFSKHKCNSMCRALKLLPHSACP 128
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A7S4KWE2_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KWE2_GUITH)

HSP 1 Score: 66.6 bits (161), Expect = 5.400e-12
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFFRTHRCSHLCKLLDLPKHPLQP 168
            ++ILTD AIHC++T RFGGTN G EGM  FF  H+C+ +C+ L L  H   P
Sbjct:   77 EFILTDPAIHCKNTDRFGGTNLGVEGMNLFFSKHKCNSMCRALKLLPHSACP 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A815GGG3_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815GGG3_ADIRI)

HSP 1 Score: 65.9 bits (159), Expect = 5.010e-11
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   16 YILTDAAIHCRDTLRFGGT--NHGEEGMARFFRTHRCSHLCKLLDLPKHPLQ 165
            Y+LTD AIHC D LRF  T  N G +GM  FFRTH CS +C LL LP H  +
Sbjct:  566 YLLTDPAIHCDDLLRFKHTRTNFGVKGMREFFRTHICSEVCSLLQLPLHETE 617
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A482SQJ1_9ARCH (Alpha-type protein kinase domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQJ1_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 5.010e-11
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 ERCKYILTDAAIHCRDTLRFGGTNHGEEGMARFFRTHRCSHLCKLLDL 147
            +R  + LTD AIHC+D L++GGTN    GM +FF+THRC+ +CK +DL
Sbjct:  664 KRKVFQLTDPAIHCKDMLKYGGTNLWVRGMRQFFKTHRCNGICKAMDL 711
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A015IH54_RHIIW (Alpha-type protein kinase domain-containing protein n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015IH54_RHIIW)

HSP 1 Score: 64.3 bits (155), Expect = 1.740e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFF-RTHRCSHLCKLLDL 147
            K++LTD AIHC D+LRFGGTN GE+G+ + F   HRC+ +CK L L
Sbjct:  516 KFLLTDPAIHCIDSLRFGGTNFGEDGINKLFLANHRCNDICKQLKL 561
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A2I1H7W3_9GLOM (Kinase-like protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1H7W3_9GLOM)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-10
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFF-RTHRCSHLCKLLDL 147
            K++LTD AIHC D+LRFGGTN GE+G+ + F   HRC+ +CK L L
Sbjct:  493 KFLLTDPAIHCIDSLRFGGTNFGEDGINKLFLANHRCNDICKQLKL 538
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BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: U9URL4_RHIID (Kinase-like domain-containing protein n=10 Tax=Rhizophagus TaxID=1129544 RepID=U9URL4_RHIID)

HSP 1 Score: 62.4 bits (150), Expect = 8.310e-10
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFF-RTHRCSHLCKLLDL 147
            ++ILTD AIHC D+LRFGGTN G++G++  F   HRC+ +CK L L
Sbjct:  530 EFILTDPAIHCIDSLRFGGTNFGKDGISELFLANHRCNDICKKLKL 575
[Close]
BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A372QEC4_9GLOM (Kinase-like domain-containing protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372QEC4_9GLOM)

HSP 1 Score: 58.9 bits (141), Expect = 8.610e-10
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMARFF-RTHRCSHLCKLLDL 147
            +++LTD AIHC D+LRFG TN G+EG+ + F   HRC+ +CK L L
Sbjct:   48 EFLLTDPAIHCIDSLRFGRTNFGKEGIDQLFLANHRCNDICKQLKL 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: U9U5G8_RHIID (Kinase-like domain-containing protein n=9 Tax=Rhizophagus TaxID=1129544 RepID=U9U5G8_RHIID)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMAR-FFRTHRCSHLCKLLDL 147
            +++LTD AIHC DTLRFG TN GEEG+ + F   HRC+ +CK L L
Sbjct:  535 EFLLTDPAIHCVDTLRFGRTNFGEEGINQCFLANHRCNDICKKLKL 580
[Close]
BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Match: A0A2Z6R157_9GLOM (Kinase-like domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R157_9GLOM)

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   13 KYILTDAAIHCRDTLRFGGTNHGEEGMAR-FFRTHRCSHLCKLLDLPKH 156
            +++LTD AIHC DTLRFG TN G+EG+ + F   HRC+ +CK L L KH
Sbjct:  532 EFLLTDPAIHCIDTLRFGRTNFGKEGINQCFLANHRCNDICKKLKL-KH 579
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120248.4182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KWC7_GUITH2.010e-1253.85Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S4KWE2_GUITH5.400e-1253.85Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A815GGG3_ADIRI5.010e-1157.69Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A482SQJ1_9ARCH5.010e-1154.17Alpha-type protein kinase domain-containing protei... [more]
A0A015IH54_RHIIW1.740e-1058.70Alpha-type protein kinase domain-containing protei... [more]
A0A2I1H7W3_9GLOM1.750e-1058.70Kinase-like protein n=1 Tax=Rhizophagus irregulari... [more]
U9URL4_RHIID8.310e-1056.52Kinase-like domain-containing protein n=10 Tax=Rhi... [more]
A0A372QEC4_9GLOM8.610e-1054.35Kinase-like domain-containing protein n=1 Tax=Rhiz... [more]
U9U5G8_RHIID1.140e-958.70Kinase-like domain-containing protein n=9 Tax=Rhiz... [more]
A0A2Z6R157_9GLOM2.900e-957.14Kinase-like domain-containing protein n=1 Tax=Rhiz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120248contigM-pyrifera_M_contig120248:73..264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score61.6
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog588596.U9URL4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha-kinase family
EggNOG OGs28NQ8@1,2QVA3@2759,3A459@33154,3P0MC@4751
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.2719188-CDS-M-pyrifera_M_contig120248:72..2641622815722.2719188-CDS-M-pyrifera_M_contig120248:72..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120248 73..264 +
1692277538.2830508-CDS-M-pyrifera_M_contig120248:72..2641692277538.2830508-CDS-M-pyrifera_M_contig120248:72..264Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120248 73..264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120248.4182.1prot_M-pyrifera_M_contig120248.4182.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120248 73..264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120248.4182.1

>prot_M-pyrifera_M_contig120248.4182.1 ID=prot_M-pyrifera_M_contig120248.4182.1|Name=mRNA_M-pyrifera_M_contig120248.4182.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
SERCKYILTDAAIHCRDTLRFGGTNHGEEGMARFFRTHRCSHLCKLLDLP
KHPLQPEEEGPEE*
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mRNA from alignment at M-pyrifera_M_contig120248:73..264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120248.4182.1 ID=mRNA_M-pyrifera_M_contig120248.4182.1|Name=mRNA_M-pyrifera_M_contig120248.4182.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig120248:73..264+ (Macrocystis pyrifera P11B4 male)
TCTGAGCGATGCAAGTACATTCTCACCGACGCAGCCATCCATTGCCGTGA
CACACTTCGCTTTGGGGGCACCAACCATGGAGAGGAAGGAATGGCGCGCT
TCTTCCGAACACATCGCTGCTCCCACCTCTGCAAGCTTCTGGATCTACCA
AAGCACCCACTCCAGCCAGAAGAAGAGGGACCGGAGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120248:73..264+

>mRNA_M-pyrifera_M_contig120248.4182.1 ID=mRNA_M-pyrifera_M_contig120248.4182.1|Name=mRNA_M-pyrifera_M_contig120248.4182.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig120248:73..264+ (Macrocystis pyrifera P11B4 male)
TCTGAGCGATGCAAGTACATTCTCACCGACGCAGCCATCCATTGCCGTGA
CACACTTCGCTTTGGGGGCACCAACCATGGAGAGGAAGGAATGGCGCGCT
TCTTCCGAACACATCGCTGCTCCCACCTCTGCAAGCTTCTGGATCTACCA
AAGCACCCACTCCAGCCAGAAGAAGAGGGACCGGAGGAGTGATCTGAGCG
ATGCAAGTACATTCTCACCGACGCAGCCATCCATTGCCGTGACACACTTC
GCTTTGGGGGCACCAACCATGGAGAGGAAGGAATGGCGCGCTTCTTCCGA
ACACATCGCTGCTCCCACCTCTGCAAGCTTCTGGATCTACCAAAGCACCC
ACTCCAGCCAGAAGAAGAGGGACCGGAGGAGTGA
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