mRNA_M-pyrifera_M_contig1202.4166.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1202.4166.1
Unique NamemRNA_M-pyrifera_M_contig1202.4166.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.080e-55
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDH--GESGYFLLNSPASSER 321
            QGYGWCTMEET+WGD+EH W +PGQL T+GPGTYKIPSFNDVPSDMRVKL+D+ NAFAVHSSKAVGEPPFF+ASSAF AIKDAVASAR+DH  G++ YF LNSPASSER
Sbjct:  474 QGYGWCTMEETSWGDSEHLWVRPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPPFFLASSAFLAIKDAVASARKDHNKGKTSYFRLNSPASSER 582
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.140e-54
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDH--GESGYFLLNSPASSER 321
            QGYGWCTMEET+WGD+EH W KPGQL T+GPGTYKIPSFNDVPSDMRVKL+D+ NAFAVHSSKAVGEPPFF+ASSAF AIKDAVASAR+DH  G++ +F LNSPASSER
Sbjct: 1364 QGYGWCTMEETSWGDSEHLWVKPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPPFFLASSAFLAIKDAVASARKDHNKGKASFFRLNSPASSER 1472
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A7S3H3T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3T6_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.040e-44
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER 321
            QG+GW TME+  WGD EHPW +PGQL TRGPGTYKIPSFNDVP+D RV L D  N FAVHSSKAVGEPPFFM +SAFFAIKDA+ +AR + G S Y+ L+ PA+SER
Sbjct:  806 QGFGWSTMEDLIWGDKEHPWVRPGQLFTRGPGTYKIPSFNDVPADFRVHLSDTDNRFAVHSSKAVGEPPFFMGASAFFAIKDAIIAARSERGFSEYYPLHLPATSER 912
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.840e-44
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDKTN-AFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHG--ESGYFLLNSPASSER 321
            QGYGWCTMEE  WGDA+H W +PGQL T+GPG YKIPSFNDVP DMRVKL+   N  FAVHSSKA+GEPPFF+ASSAFFAIK A+ +AR DHG   + +F L SPASSER
Sbjct: 1246 QGYGWCTMEELIWGDADHKWVRPGQLFTKGPGAYKIPSFNDVPGDMRVKLMHSVNNPFAVHSSKAIGEPPFFLASSAFFAIKAAIRAAREDHGIDATTHFDLYSPASSER 1355
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A7S2RHM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHM1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.640e-41
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDK-TNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER 321
            QG GW TMEE AWGD  H W +PGQL TRGPG YKIP+FND P D+RV+LLDK +N FAVHSSKAVGEPPFF+ +S FFAIKDAV +AR D G S  F L +PA+SE+
Sbjct:  478 QGMGWMTMEELAWGDEAHSWVRPGQLFTRGPGAYKIPAFNDTPVDLRVQLLDKASNPFAVHSSKAVGEPPFFLGASVFFAIKDAVRAARADAGLSSQFTLLAPATSEK 585
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A1Q9C0G2_SYMMI (Xanthine dehydrogenase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C0G2_SYMMI)

HSP 1 Score: 137 bits (345), Expect = 5.060e-39
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLL-DKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHG-ESGYFLLNSPASSER 321
            QG+GW T+EET WG +E PW KPG  +TRGPGTYKIPSFND P DMRV L+ D  N  A+HSS+AVGEPPFF+ S AFFA ++A+A+AR+D G    YF ++ P + ER
Sbjct:   45 QGFGWATLEETVWGCSEFPWLKPGVCMTRGPGTYKIPSFNDTPVDMRVTLVKDSANPNAIHSSRAVGEPPFFLGSCAFFAAREAIAAARQDAGLGDDYFTVDLPLTPER 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A1Y1HYE7_KLENI (Xanthine dehydrogenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYE7_KLENI)

HSP 1 Score: 147 bits (371), Expect = 7.010e-39
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLD-KTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER 321
            QG GWC +EE  WGDA HPW +PG L T+GPGTYK+P+ ND+P D +V LL   TN  A+HSSKAVGEPP F+A+SAFFAIKDA+ SAR D G   +F+L+SPA+ ER
Sbjct: 1258 QGLGWCVIEELKWGDAAHPWVRPGHLFTQGPGTYKLPTVNDIPIDFQVALLKGATNPRAIHSSKAVGEPPLFLAASAFFAIKDAITSARHDAGHDEHFVLDSPATPER 1365
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 147 bits (371), Expect = 7.020e-39
Identity = 72/109 (66.06%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLL-DKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASAR-RDHGESGYFLLNSPASSER 321
            QG+GW T EE  WGDA+HPW KPG L+TRGPG YKIP+FNDVP D RV LL D  N  AVHSSKA+GEPPFF+A+SAFFAIKDAV++ R ++ G  G+F    PAS+ER
Sbjct: 1331 QGFGWLTTEELIWGDADHPWVKPGSLLTRGPGAYKIPAFNDVPIDFRVTLLKDTKNPVAVHSSKAIGEPPFFLAASAFFAIKDAVSAYRTQELGIDGFFPFYGPASTER 1439
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A7S1CLS1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLS1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.330e-38
Identity = 64/108 (59.26%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLL-DKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER 321
            QG GW T+EE  WGD+ H W +PG + T+GPGTYKIPSFNDVP D RV LL D  N  A++SSKAVGEPPFF+A + F A++DA+ +AR+D+G  G+F+L++PA++ER
Sbjct:  329 QGAGWLTIEEAVWGDSAHKWVRPGMMFTQGPGTYKIPSFNDVPIDFRVALLHDTPNPAAIYSSKAVGEPPFFLACAVFLALRDAIGAARKDNGLEGHFVLDAPATAER 436
[Close]
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Match: A0A2K1IVG5_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IVG5_PHYPA)

HSP 1 Score: 145 bits (366), Expect = 3.310e-38
Identity = 65/108 (60.19%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 QGYGWCTMEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLL-DKTNAFAVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER 321
            QG GW  +EE  WGD+ HPW +PG L T+GPGTYK+P+ ND+P D RV LL D  N+ A+HSSKAVGEPP F+A+SA FAIKDA+ +AR+D G +G+F+L++PA+ ER
Sbjct: 1265 QGLGWAILEELKWGDSAHPWVRPGHLFTQGPGTYKLPTVNDIPIDFRVSLLKDAPNSKAIHSSKAVGEPPLFLATSALFAIKDAIKAARKDSGHNGWFVLDTPATPER 1372
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1202.4166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW60_9PHAE1.080e-5582.57Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
D7G4V3_ECTSI4.140e-5482.57Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A7S3H3T6_9STRA1.040e-4471.03Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836C8N1_9STRA2.840e-4471.82Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2RHM1_9STRA1.640e-4168.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Q9C0G2_SYMMI5.060e-3960.55Xanthine dehydrogenase n=1 Tax=Symbiodinium microa... [more]
A0A1Y1HYE7_KLENI7.010e-3962.96Xanthine dehydrogenase n=1 Tax=Klebsormidium niten... [more]
W7TFQ7_9STRA7.020e-3966.06Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S1CLS1_9STRA2.330e-3859.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2K1IVG5_PHYPA3.310e-3860.19Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1202contigM-pyrifera_M_contig1202:7193..8203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.5e-41
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size324
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1202.4166.1prot_M-pyrifera_M_contig1202.4166.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1202 7214..8203 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.5013368-UTR-M-pyrifera_M_contig1202:7192..72131622815721.5013368-UTR-M-pyrifera_M_contig1202:7192..7213Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1202 7193..7213 +
1692277537.9545603-UTR-M-pyrifera_M_contig1202:7192..72131692277537.9545603-UTR-M-pyrifera_M_contig1202:7192..7213Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1202 7193..7213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.5196233-CDS-M-pyrifera_M_contig1202:7213..73811622815721.5196233-CDS-M-pyrifera_M_contig1202:7213..7381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1202 7214..7381 +
1692277537.96696-CDS-M-pyrifera_M_contig1202:7213..73811692277537.96696-CDS-M-pyrifera_M_contig1202:7213..7381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1202 7214..7381 +
1622815721.5344472-CDS-M-pyrifera_M_contig1202:8068..82031622815721.5344472-CDS-M-pyrifera_M_contig1202:8068..8203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1202 8069..8203 +
1692277537.9757574-CDS-M-pyrifera_M_contig1202:8068..82031692277537.9757574-CDS-M-pyrifera_M_contig1202:8068..8203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1202 8069..8203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1202.4166.1

>prot_M-pyrifera_M_contig1202.4166.1 ID=prot_M-pyrifera_M_contig1202.4166.1|Name=mRNA_M-pyrifera_M_contig1202.4166.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MEETAWGDAEHPWAKPGQLITRGPGTYKIPSFNDVPSDMRVKLLDKTNAF
AVHSSKAVGEPPFFMASSAFFAIKDAVASARRDHGESGYFLLNSPASSER
*
back to top

mRNA from alignment at M-pyrifera_M_contig1202:7193..8203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1202.4166.1 ID=mRNA_M-pyrifera_M_contig1202.4166.1|Name=mRNA_M-pyrifera_M_contig1202.4166.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at M-pyrifera_M_contig1202:7193..8203+ (Macrocystis pyrifera P11B4 male)
CAGGGGTACGGGTGGTGCACGATGGAAGAGACGGCGTGGGGGGACGCGGA
GCACCCCTGGGCTAAGCCCGGCCAGCTAATCACTCGCGGACCCGGCACGT
ACAAGATCCCTTCGTTTAACGATGTACCGTCCGACATGCGGGTGAAGCTC
CTGGATAAAACGAACGCCTTCGCCGTTCACTCTTCGAAGGTAAAGCCAAC
GTCGAAATTCCTGGCTTCGTATAGGCGGCCCATCACCCACCTACTCCCCC
ACCCACCCACTTACCCAACCTCCCATCCACTCACCCATCCGCCCACCCAC
CCATCCACCTCCTTTATCACCCACACCCACGCACCCACCCACCCACCCAC
CCACCCACCGACCCACTCATCCATCCACCCACCTACCCACGCACATACGC
CCAAGCTACCACCTACCCGCCCAGTAACCGAGGGGTTGTTTCGGCCGCAT
CGTCGCTACGCTCATTCCTATTATCAATTCCCTCGCGTGGTGAGTATCCC
TGTGCTGCATAAGTGTTTTATAACATCCCTGCTGCTACTGCTGCCGCTGC
TTCTACTGCGGAATTACTCTTGAAATAGAGAACTACTTCTATTTTACCAT
TTCTGCTATCACCAAACCGATATGTTTGGCGCTCCCCTTCCTCCTCCTCC
TTCTCGAAGCTCGTATTACAACCGCTATTATACCGCTCCCACTGCCGCCA
CCGTCACTGCTGCTGCTGCATGCACCGCCCCGACTAATGTTGGTGCTGCT
ACGTCTACAGCCGTTGCTGTTGCTACTGCTGCCGTCATCCTCACGTATTA
CAGCATGTCGTTCCCTCGCACGGTTTCAACGGATCTATCCCAACCATGTT
TTGTCTCTGCTGTGGGTGCCGATTAGGCCGTGGGAGAGCCTCCGTTTTTC
ATGGCGTCGTCAGCATTTTTCGCGATCAAGGATGCGGTGGCTTCTGCAAG
GAGGGACCACGGGGAATCGGGGTACTTCTTGCTCAACAGCCCCGCTTCTT
CGGAGAGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1202:7193..8203+

>mRNA_M-pyrifera_M_contig1202.4166.1 ID=mRNA_M-pyrifera_M_contig1202.4166.1|Name=mRNA_M-pyrifera_M_contig1202.4166.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig1202:7193..8203+ (Macrocystis pyrifera P11B4 male)
ATGGAAGAGACGGCGTGGGGGGACGCGGAGCACCCCTGGGCTAAGCCCGG
CCAGCTAATCACTCGCGGACCCGGCACGTACAAGATCCCTTCGTTTAACG
ATGTACCGTCCGACATGCGGGTGAAGCTCCTGGATAAAACGAACGCCTTC
GCCGTTCACTCTTCGAAGATGGAAGAGACGGCGTGGGGGGACGCGGAGCA
CCCCTGGGCTAAGCCCGGCCAGCTAATCACTCGCGGACCCGGCACGTACA
AGATCCCTTCGTTTAACGATGTACCGTCCGACATGCGGGTGAAGCTCCTG
GATAAAACGAACGCCTTCGCCGTTCACTCTTCGAAGGCCGTGGGAGAGCC
TCCGTTTTTCATGGCGTCGTCAGCATTTTTCGCGATCAAGGATGCGGTGG
CTTCTGCAAGGAGGGACCACGGGGAATCGGGGTACTTCTTGCTCAACAGC
CCCGCTTCTTCGGAGAGGTAGGCCGTGGGAGAGCCTCCGTTTTTCATGGC
GTCGTCAGCATTTTTCGCGATCAAGGATGCGGTGGCTTCTGCAAGGAGGG
ACCACGGGGAATCGGGGTACTTCTTGCTCAACAGCCCCGCTTCTTCGGAG
AGGTAG
back to top