mRNA_M-pyrifera_M_contig120188.4163.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120188.4163.1
Unique NamemRNA_M-pyrifera_M_contig120188.4163.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120188.4163.1 vs. uniprot
Match: A0A2E3MKT1_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MKT1_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 9.060e-7
Identity = 36/125 (28.80%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:   22 ALSFSVLLISQSAFAYYCSTQAGQGYINVGDSMAQVQQACGNATNAQSQNTANKEFKTTEYWMYSNA----KVANSVSY---------GAFKTQANVT--QEASPAVFQIENGIVTGITDNGSNV 351
            A++ S L +S S++A++ S+     Y+NVGDSM  ++QACG  T+ + + T        +YW Y N      +A  V+          G F      T  ++    +F I+   +  IT NG  V
Sbjct:    9 AVAVSALFLSSSSYAFFFSSSTANCYMNVGDSMTTIEQACGAPTSKEQKETGGPSSSIVQYWSYDNTVREGNLAPRVNQNPDQISGQRGRFNQSETYTIAKQGPNLIFAIDGQTIKSITKNGKKV 133
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BLAST of mRNA_M-pyrifera_M_contig120188.4163.1 vs. uniprot
Match: A0A2E2THR9_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2THR9_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 1.860e-6
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:   25 LSFSVLLISQSA--FAYYCSTQAGQGYINVGDSMAQVQQACGNATNAQSQNTANKEFKTTEYWMYSNAKVANSVSYGAFKTQANVTQEASPAVFQIENGIVTGITDNGSNVQSVKTC 369
            L F +LL+  S+  +AY+CS+Q G GY+N+GD++ +VQ+ CG   +     ++ ++    + W Y++  +          T  + T+      FQI N  V  I+  G +V S   C
Sbjct:    6 LLFLILLLGMSSNTYAYFCSSQKGHGYVNIGDTLQEVQRICGTPDHEVKVASSGEKNLFIQNWTYTHQPIQTRFDS---PTPQSDTEYPPDVTFQIVNNKVNLISVQGRHVMSSNLC 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120188.4163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E3MKT1_9GAMM9.060e-728.80Uncharacterized protein n=1 Tax=Legionellales bact... [more]
A0A2E2THR9_9GAMM1.860e-629.06Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120188contigM-pyrifera_M_contig120188:162..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.3805287-CDS-M-pyrifera_M_contig120188:161..5301622815721.3805287-CDS-M-pyrifera_M_contig120188:161..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120188 162..530 +
1692277537.8894992-CDS-M-pyrifera_M_contig120188:161..5301692277537.8894992-CDS-M-pyrifera_M_contig120188:161..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120188 162..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120188.4163.1prot_M-pyrifera_M_contig120188.4163.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120188 162..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120188.4163.1

>prot_M-pyrifera_M_contig120188.4163.1 ID=prot_M-pyrifera_M_contig120188.4163.1|Name=mRNA_M-pyrifera_M_contig120188.4163.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MKHISKVALSFSVLLISQSAFAYYCSTQAGQGYINVGDSMAQVQQACGNA
TNAQSQNTANKEFKTTEYWMYSNAKVANSVSYGAFKTQANVTQEASPAVF
QIENGIVTGITDNGSNVQSVKTC
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mRNA from alignment at M-pyrifera_M_contig120188:162..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120188.4163.1 ID=mRNA_M-pyrifera_M_contig120188.4163.1|Name=mRNA_M-pyrifera_M_contig120188.4163.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig120188:162..530+ (Macrocystis pyrifera P11B4 male)
ATGAAGCATATATCGAAAGTTGCGCTTAGTTTTAGCGTTCTCCTAATTAG
CCAATCCGCATTCGCTTATTATTGCTCAACCCAGGCAGGGCAAGGCTATA
TCAATGTAGGTGATAGCATGGCCCAAGTCCAGCAAGCCTGTGGTAACGCG
ACTAATGCACAATCCCAGAATACTGCGAATAAAGAATTTAAAACGACGGA
ATACTGGATGTATTCAAATGCTAAAGTAGCAAACTCGGTGTCTTACGGCG
CGTTCAAGACACAAGCCAACGTTACCCAAGAGGCATCTCCGGCTGTATTT
CAAATCGAGAACGGTATTGTGACAGGGATCACCGATAATGGCAGCAATGT
GCAAAGCGTAAAAACCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120188:162..530+

>mRNA_M-pyrifera_M_contig120188.4163.1 ID=mRNA_M-pyrifera_M_contig120188.4163.1|Name=mRNA_M-pyrifera_M_contig120188.4163.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig120188:162..530+ (Macrocystis pyrifera P11B4 male)
ATGAAGCATATATCGAAAGTTGCGCTTAGTTTTAGCGTTCTCCTAATTAG
CCAATCCGCATTCGCTTATTATTGCTCAACCCAGGCAGGGCAAGGCTATA
TCAATGTAGGTGATAGCATGGCCCAAGTCCAGCAAGCCTGTGGTAACGCG
ACTAATGCACAATCCCAGAATACTGCGAATAAAGAATTTAAAACGACGGA
ATACTGGATGTATTCAAATGCTAAAGTAGCAAACTCGGTGTCTTACGGCG
CGTTCAAGACACAAGCCAACGTTACCCAAGAGGCATCTCCGGCTGTATTT
CAAATCGAGAACGGTATTGTGACAGGGATCACCGATAATGGCAGCAATGT
GCAAAGCGTAAAAACCTGCATGAAGCATATATCGAAAGTTGCGCTTAGTT
TTAGCGTTCTCCTAATTAGCCAATCCGCATTCGCTTATTATTGCTCAACC
CAGGCAGGGCAAGGCTATATCAATGTAGGTGATAGCATGGCCCAAGTCCA
GCAAGCCTGTGGTAACGCGACTAATGCACAATCCCAGAATACTGCGAATA
AAGAATTTAAAACGACGGAATACTGGATGTATTCAAATGCTAAAGTAGCA
AACTCGGTGTCTTACGGCGCGTTCAAGACACAAGCCAACGTTACCCAAGA
GGCATCTCCGGCTGTATTTCAAATCGAGAACGGTATTGTGACAGGGATCA
CCGATAATGGCAGCAATGTGCAAAGCGTAAAAACCTGC
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