mRNA_M-pyrifera_M_contig120187.4162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120187.4162.1
Unique NamemRNA_M-pyrifera_M_contig120187.4162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A1Y2GXT4_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GXT4_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 6.970e-9
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 HSFWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEACEDK 150
            H FW  +VCK FLV FCPN    N++ D+G C+ +H E L++E++   DK
Sbjct:   22 HKFWDKEVCKHFLVKFCPNSLFTNTKSDLGNCDLIHDEKLREEYQNAPDK 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: T1J2U3_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J2U3_STRMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   19 QVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWE 135
            QVCK +LV FCPNE   N+R D+GPCE +H E LK E+E
Sbjct:   35 QVCKHYLVKFCPNELFVNTRADLGPCEKIHDEQLKSEYE 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A137P1M3_CONC2 (LUC7-domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P1M3_CONC2)

HSP 1 Score: 58.2 bits (139), Expect = 1.180e-8
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   22 VCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEACEDK 150
            VCK FLV FCPN    N++ D+GPC   H ESLKKE++ C DK
Sbjct:   29 VCKHFLVRFCPNNLFINTKSDLGPCVKDHDESLKKEYQECPDK 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A8D2P508_ZOSLA (LUC7 like 3 pre-mRNA splicing factor n=1 Tax=Zosterops lateralis melanops TaxID=1220523 RepID=A0A8D2P508_ZOSLA)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 SFWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWE 135
            SF   QVCK +L  FCP E   N+R D+GPCE +H E+L+K++E
Sbjct:    5 SFLLCQVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYE 48
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A8B7ZXX0_ACAPL (luc7-like protein 3 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZXX0_ACAPL)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   22 VCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEAC 141
            VCK FL  FCP+E   N+R D+GPCE +H ESLK+ +E C
Sbjct:   34 VCKHFLCGFCPHELFINTRSDLGPCEKVHDESLKRSFEQC 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A1Y1YIK2_9FUNG (LUC7-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIK2_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 4.630e-8
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    4 SFWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEACEDK 150
             F+   VCK FLV FCP+E   N++ D+GPC+ +H E+L+++++  ED+
Sbjct:   22 KFYDRDVCKYFLVRFCPHELFINTKSDLGPCDKIHEEALRRDYQEAEDR 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A8C3LX01_CHRPC (LUC7 like 3 pre-mRNA splicing factor n=5 Tax=Neognathae TaxID=8825 RepID=A0A8C3LX01_CHRPC)

HSP 1 Score: 55.8 bits (133), Expect = 9.290e-8
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 WCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWE 135
            W + VCK +L  FCP E   N+R D+GPCE +H E+L+K++E
Sbjct:   13 WLLGVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYE 54
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A197KE55_9FUNG (LUC7-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KE55_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.210e-7
Identity = 21/50 (42.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 HSFWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEACEDK 150
            + FW  +VCK FLV FCPN    N++ D+G C+ +H E L++E++   D+
Sbjct:   22 YKFWDKEVCKHFLVKFCPNSLFTNTKSDLGNCDLVHDEKLREEYQKAPDR 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: A0A663LY20_ATHCN (LUC7 like 3 pre-mRNA splicing factor n=2 Tax=Strigiformes TaxID=30458 RepID=A0A663LY20_ATHCN)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 22/43 (51.16%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 FWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWE 135
            F   QVCK +L  FCP E   N+R D+GPCE +H E+L+K++E
Sbjct:   17 FLLCQVCKYYLCGFCPAELFTNTRSDLGPCEKIHDENLRKQYE 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Match: UPI0018D87813 (luc7-like protein 3 n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D87813)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-7
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   22 VCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWE 135
            VCK FL  FCP+E   N+R D+GPCE LH ESL++++E
Sbjct:   34 VCKNFLCGFCPHELFINTRSDLGPCEKLHDESLRRQFE 71
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120187.4162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2GXT4_9FUNG6.970e-946.00Uncharacterized protein n=1 Tax=Lobosporangium tra... [more]
T1J2U3_STRMM1.040e-861.54Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A137P1M3_CONC21.180e-858.14LUC7-domain-containing protein n=1 Tax=Conidiobolu... [more]
A0A8D2P508_ZOSLA3.630e-852.27LUC7 like 3 pre-mRNA splicing factor n=1 Tax=Zoste... [more]
A0A8B7ZXX0_ACAPL3.630e-857.50luc7-like protein 3 n=1 Tax=Acanthaster planci Tax... [more]
A0A1Y1YIK2_9FUNG4.630e-842.86LUC7-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A8C3LX01_CHRPC9.290e-850.00LUC7 like 3 pre-mRNA splicing factor n=5 Tax=Neogn... [more]
A0A197KE55_9FUNG1.210e-742.00LUC7-domain-containing protein n=1 Tax=Linnemannia... [more]
A0A663LY20_ATHCN1.740e-751.16LUC7 like 3 pre-mRNA splicing factor n=2 Tax=Strig... [more]
UPI0018D878132.380e-757.89luc7-like protein 3 n=1 Tax=Patiria miniata TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120187contigM-pyrifera_M_contig120187:389..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog588596.U9T356
Preferred nameLUC7
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U1 snrnp splicing complex subunit
EggNOG OGs38DNS@33154,3NVIA@4751,COG5200@1,KOG0796@2759
COG Functional cat.A
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.3444834-CDS-M-pyrifera_M_contig120187:388..5381622815721.3444834-CDS-M-pyrifera_M_contig120187:388..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120187 389..538 +
1692277537.8778906-CDS-M-pyrifera_M_contig120187:388..5381692277537.8778906-CDS-M-pyrifera_M_contig120187:388..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120187 389..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120187.4162.1prot_M-pyrifera_M_contig120187.4162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120187 389..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120187.4162.1

>prot_M-pyrifera_M_contig120187.4162.1 ID=prot_M-pyrifera_M_contig120187.4162.1|Name=mRNA_M-pyrifera_M_contig120187.4162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
HSFWCVQVCKPFLVAFCPNEELRNSRGDIGPCENLHRESLKKEWEACEDK
back to top

mRNA from alignment at M-pyrifera_M_contig120187:389..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120187.4162.1 ID=mRNA_M-pyrifera_M_contig120187.4162.1|Name=mRNA_M-pyrifera_M_contig120187.4162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig120187:389..538+ (Macrocystis pyrifera P11B4 male)
CACTCGTTTTGGTGCGTGCAGGTGTGCAAGCCGTTCTTGGTTGCGTTCTG
CCCGAACGAGGAGCTGCGCAACTCGCGCGGCGACATTGGGCCGTGCGAGA
ATCTTCATCGCGAGTCGCTGAAGAAGGAGTGGGAGGCGTGCGAGGATAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120187:389..538+

>mRNA_M-pyrifera_M_contig120187.4162.1 ID=mRNA_M-pyrifera_M_contig120187.4162.1|Name=mRNA_M-pyrifera_M_contig120187.4162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig120187:389..538+ (Macrocystis pyrifera P11B4 male)
CACTCGTTTTGGTGCGTGCAGGTGTGCAAGCCGTTCTTGGTTGCGTTCTG
CCCGAACGAGGAGCTGCGCAACTCGCGCGGCGACATTGGGCCGTGCGAGA
ATCTTCATCGCGAGTCGCTGAAGAAGGAGTGGGAGGCGTGCGAGGATAAG
CACTCGTTTTGGTGCGTGCAGGTGTGCAAGCCGTTCTTGGTTGCGTTCTG
CCCGAACGAGGAGCTGCGCAACTCGCGCGGCGACATTGGGCCGTGCGAGA
ATCTTCATCGCGAGTCGCTGAAGAAGGAGTGGGAGGCGTGCGAGGATAAG
back to top