prot_M-pyrifera_M_contig120175.4161.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120175.4161.1
Unique Nameprot_M-pyrifera_M_contig120175.4161.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length126
Homology
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BLAST of mRNA_M-pyrifera_M_contig120175.4161.1 vs. uniprot
Match: A0A084RW72_STACH (Uncharacterized protein n=3 Tax=Stachybotrys TaxID=74721 RepID=A0A084RW72_STACH)

HSP 1 Score: 53.9 bits (128), Expect = 7.340e-6
Identity = 40/138 (28.99%), Postives = 57/138 (41.30%), Query Frame = 0 
Query:    1 DLKCPVCLDPLMEPVRLCEDHHLCLPCLQ----AMPSTIKCPVCKRDSPHDAEGNVAP--LAAERVVLRLLGALCVKCQR----CPWQGPRSEYNTHEERTCV--GFSCPHESCXXXXXXXXXQPHLDSSCDYAVVPC 126
            +L CP+C DPL++P+    DH  C  C++    + PS   CP+       D E    P   +A R++   L  L VKC      C  Q  R +  TH    C    ++CP  SC             D  C +  +PC
Sbjct:  137 NLLCPICHDPLVDPITTPCDHTFCYRCIRRCIDSSPSGTACPI-------DREPLTWPECFSAARLIRTQLNGLVVKCPNYIRGCKKQAMREDIETHATSECRYREYTCPDTSCDKKLHDKPK----DDDCHHREIPC 263
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120175.4161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A084RW72_STACH7.340e-628.99Uncharacterized protein n=3 Tax=Stachybotrys TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..95
e-value: 3.5E-13
score: 51.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 4..41
score: 9.73
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 67..124
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120175contigM-pyrifera_M_contig120175:107..484 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120175.4161.1mRNA_M-pyrifera_M_contig120175.4161.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120175 107..484 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120175.4161.1 ID=prot_M-pyrifera_M_contig120175.4161.1|Name=mRNA_M-pyrifera_M_contig120175.4161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
DLKCPVCLDPLMEPVRLCEDHHLCLPCLQAMPSTIKCPVCKRDSPHDAEG
NVAPLAAERVVLRLLGALCVKCQRCPWQGPRSEYNTHEERTCVGFSCPHE
SCSWSGRRDDLQPHLDSSCDYAVVPC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR008974TRAF-like