mRNA_M-pyrifera_M_contig120175.4161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120175.4161.1
Unique NamemRNA_M-pyrifera_M_contig120175.4161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120175.4161.1 vs. uniprot
Match: A0A084RW72_STACH (Uncharacterized protein n=3 Tax=Stachybotrys TaxID=74721 RepID=A0A084RW72_STACH)

HSP 1 Score: 53.9 bits (128), Expect = 7.340e-6
Identity = 40/138 (28.99%), Postives = 57/138 (41.30%), Query Frame = 1 
Query:    1 DLKCPVCLDPLMEPVRLCEDHHLCLPCLQ----AMPSTIKCPVCKRDSPHDAEGNVAP--LAAERVVLRLLGALCVKCQR----CPWQGPRSEYNTHEERTCV--GFSCPHESCXXXXXXXXXQPHLDSSCDYAVVPC 378
            +L CP+C DPL++P+    DH  C  C++    + PS   CP+       D E    P   +A R++   L  L VKC      C  Q  R +  TH    C    ++CP  SC             D  C +  +PC
Sbjct:  137 NLLCPICHDPLVDPITTPCDHTFCYRCIRRCIDSSPSGTACPI-------DREPLTWPECFSAARLIRTQLNGLVVKCPNYIRGCKKQAMREDIETHATSECRYREYTCPDTSCDKKLHDKPK----DDDCHHREIPC 263
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120175.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A084RW72_STACH7.340e-628.99Uncharacterized protein n=3 Tax=Stachybotrys TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120175contigM-pyrifera_M_contig120175:107..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog35725.K2SS04
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RING-type zinc-finger
EggNOG OGs2020T@147541,3A1SD@33154,3P2TJ@4751,3QUHD@4890,KOG0297@1,KOG0297@2759
COG Functional cat.O
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.302015-CDS-M-pyrifera_M_contig120175:106..4841622815721.302015-CDS-M-pyrifera_M_contig120175:106..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120175 107..484 -
1692277537.8635054-CDS-M-pyrifera_M_contig120175:106..4841692277537.8635054-CDS-M-pyrifera_M_contig120175:106..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120175 107..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120175.4161.1prot_M-pyrifera_M_contig120175.4161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120175 107..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120175.4161.1

>prot_M-pyrifera_M_contig120175.4161.1 ID=prot_M-pyrifera_M_contig120175.4161.1|Name=mRNA_M-pyrifera_M_contig120175.4161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
DLKCPVCLDPLMEPVRLCEDHHLCLPCLQAMPSTIKCPVCKRDSPHDAEG
NVAPLAAERVVLRLLGALCVKCQRCPWQGPRSEYNTHEERTCVGFSCPHE
SCSWSGRRDDLQPHLDSSCDYAVVPC
back to top

mRNA from alignment at M-pyrifera_M_contig120175:107..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120175.4161.1 ID=mRNA_M-pyrifera_M_contig120175.4161.1|Name=mRNA_M-pyrifera_M_contig120175.4161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig120175:107..484- (Macrocystis pyrifera P11B4 male)
GACCTCAAATGTCCCGTGTGCTTGGACCCCCTGATGGAGCCTGTGCGGCT
GTGCGAGGACCACCACCTCTGCCTCCCATGCCTGCAGGCAATGCCCAGCA
CTATCAAGTGTCCAGTCTGCAAGCGCGACTCCCCCCACGACGCCGAGGGA
AACGTCGCTCCCTTGGCCGCAGAGCGGGTGGTGCTTCGCCTCCTTGGCGC
CCTGTGTGTGAAGTGCCAGCGATGCCCTTGGCAAGGCCCTCGCTCAGAGT
ACAACACTCATGAAGAGCGGACGTGTGTTGGCTTCTCTTGCCCACACGAG
AGCTGCTCGTGGAGTGGTCGTCGCGACGATCTTCAGCCCCACCTCGACAG
CTCGTGCGACTACGCAGTTGTGCCATGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120175:107..484-

>mRNA_M-pyrifera_M_contig120175.4161.1 ID=mRNA_M-pyrifera_M_contig120175.4161.1|Name=mRNA_M-pyrifera_M_contig120175.4161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig120175:107..484- (Macrocystis pyrifera P11B4 male)
GACCTCAAATGTCCCGTGTGCTTGGACCCCCTGATGGAGCCTGTGCGGCT
GTGCGAGGACCACCACCTCTGCCTCCCATGCCTGCAGGCAATGCCCAGCA
CTATCAAGTGTCCAGTCTGCAAGCGCGACTCCCCCCACGACGCCGAGGGA
AACGTCGCTCCCTTGGCCGCAGAGCGGGTGGTGCTTCGCCTCCTTGGCGC
CCTGTGTGTGAAGTGCCAGCGATGCCCTTGGCAAGGCCCTCGCTCAGAGT
ACAACACTCATGAAGAGCGGACGTGTGTTGGCTTCTCTTGCCCACACGAG
AGCTGCTCGTGGAGTGGTCGTCGCGACGATCTTCAGCCCCACCTCGACAG
CTCGTGCGACTACGCAGTTGTGCCATGCGACCTCAAATGTCCCGTGTGCT
TGGACCCCCTGATGGAGCCTGTGCGGCTGTGCGAGGACCACCACCTCTGC
CTCCCATGCCTGCAGGCAATGCCCAGCACTATCAAGTGTCCAGTCTGCAA
GCGCGACTCCCCCCACGACGCCGAGGGAAACGTCGCTCCCTTGGCCGCAG
AGCGGGTGGTGCTTCGCCTCCTTGGCGCCCTGTGTGTGAAGTGCCAGCGA
TGCCCTTGGCAAGGCCCTCGCTCAGAGTACAACACTCATGAAGAGCGGAC
GTGTGTTGGCTTCTCTTGCCCACACGAGAGCTGCTCGTGGAGTGGTCGTC
GCGACGATCTTCAGCCCCACCTCGACAGCTCGTGCGACTACGCAGTTGTG
CCATGC
back to top