prot_M-pyrifera_M_contig120172.4160.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig120172.4160.1
Unique Nameprot_M-pyrifera_M_contig120172.4160.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length178
Homology
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A5C7T8D0_PSESP (Radical SAM protein (Fragment) n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A5C7T8D0_PSESP)

HSP 1 Score: 292 bits (747), Expect = 1.180e-98
Identity = 143/177 (80.79%), Postives = 158/177 (89.27%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            A+ KVGFVSLGCPKA VDSERI+TQLRL+GYE+V TYEDADVVVVNTCGFIDSAKAESL TIGEA++ENGKVIVTGC+GV E+AIR VHP+VL+VTGPQQYE VV AVH   P    HDPF DLVPPQGIKLTPRHYAYLKISEGCNH CSFCIIPSMRG+L SRP+ DV++EA+RL
Sbjct:    4 ATPKVGFVSLGCPKATVDSERILTQLRLEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDTIGEAIAENGKVIVTGCMGVSENAIRDVHPSVLAVTGPQQYEQVVNAVHEVIPPKKDHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRL 180          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A7X6Q4Q5_9BURK (Radical SAM protein (Fragment) n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7X6Q4Q5_9BURK)

HSP 1 Score: 290 bits (742), Expect = 2.420e-97
Identity = 143/177 (80.79%), Postives = 156/177 (88.14%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            +S KVGFVSLGCPKALVDSERI+TQLR +GYE+  TYE ADVVVVNTCGFIDSAKAESL  IGEAL+ENG+VIVTGC+GV ED IR VHP+VLSVTGPQQYE VV AVH  AP ++ HDPF DLVPPQGI+LTPRHYAYLKISEGCNH C+FCIIPSMRGRL SRPI DVM EA+RL
Sbjct:    2 SSPKVGFVSLGCPKALVDSERILTQLRSEGYEISPTYEGADVVVVNTCGFIDSAKAESLDAIGEALAENGRVIVTGCMGVEEDTIRQVHPSVLSVTGPQQYEEVVRAVHEAAPPEIDHDPFVDLVPPQGIRLTPRHYAYLKISEGCNHSCAFCIIPSMRGRLVSRPIGDVMDEAKRL 178          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A359DES5_PSESP (30S ribosomal protein S12 methylthiotransferase RimO (Fragment) n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A359DES5_PSESP)

HSP 1 Score: 292 bits (748), Expect = 3.610e-97
Identity = 142/178 (79.78%), Postives = 159/178 (89.33%), Query Frame = 0
Query:    1 PASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            PA+ KVGFVSLGCPKALVDSERI+TQLR++GYE+V+TY+DADVVVVNTCGFIDSAKAESL  IGEAL+ENGKVIVTGC+GV E AIR VHP+VLSVTGPQQYE V+ AVH   P +  H+P  DLVPPQGIKLTPRHYAYLKISEGCNH CSFCIIPSMRG+L SRP+ DV++EAERL
Sbjct:    4 PATPKVGFVSLGCPKALVDSERILTQLRMEGYEVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEALAENGKVIVTGCMGVEESAIRNVHPSVLSVTGPQQYEQVLNAVHEVVPPNTEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERL 181          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A1H5TMJ4_9GAMM (Ribosomal protein S12 methylthiotransferase RimO n=13 Tax=Alcanivoracaceae TaxID=224372 RepID=A0A1H5TMJ4_9GAMM)

HSP 1 Score: 296 bits (759), Expect = 4.380e-97
Identity = 146/176 (82.95%), Postives = 155/176 (88.07%), Query Frame = 0
Query:    3 SAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            S KVGF+SLGCPKALVDSERI+TQLR +GYE+  +Y+DADVVVVNTCGFID AKAESL TIGEALSENGKVIVTGC+GV ED IR VHP+VLSVTGPQQYE VV AVH   P    HDPF DLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRG+LDSRPI DVM EAERL
Sbjct:    2 SGKVGFISLGCPKALVDSERILTQLRTEGYEVTPSYDDADVVVVNTCGFIDDAKAESLETIGEALSENGKVIVTGCMGVEEDTIRKVHPSVLSVTGPQQYEQVVNAVHQVVPPSQNHDPFLDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGKLDSRPIGDVMDEAERL 177          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A0F2R3R7_9PSED (Ribosomal protein S12 methylthiotransferase (Fragment) n=1 Tax=Pseudomonas sp. BRH_c35 TaxID=1629711 RepID=A0A0F2R3R7_9PSED)

HSP 1 Score: 289 bits (740), Expect = 1.640e-96
Identity = 138/177 (77.97%), Postives = 158/177 (89.27%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            A+ KVGF+SLGCPKA VDSERI+TQLR++GY++V +YEDADVVVVNTCGFIDSAKAESL  IGEA++ENGKVIVTGC+GV E+ IR VHP+VL+VTGPQQYE VV AVH   P ++ HDPF DLVPPQGIKLTPRHYAYLKISEGCNH CSFCIIPSMRG+L SRP+ DV++EAERL
Sbjct:    4 ATPKVGFISLGCPKATVDSERILTQLRMEGYQIVPSYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVDENNIRGVHPSVLAVTGPQQYEQVVNAVHEVVPPNIEHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERL 180          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A7V8TT04_9GAMM (Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8TT04_9GAMM)

HSP 1 Score: 294 bits (753), Expect = 3.860e-96
Identity = 145/177 (81.92%), Postives = 156/177 (88.14%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            A+ KVGFVSLGCPKALVDSERI+TQLR DGY++V TYEDADVVVVNTCGFID AKAESL  IGEA+  NG+VIVTGCLGV   AI+  HP VL+VTGPQQYEAVVGAVH HAP+  AHDPFTDLVPPQGIKLTPRHYAYLKISEGCNH+CSFCIIPSMRG L SRP  DV+AEAERL
Sbjct:    4 AAPKVGFVSLGCPKALVDSERILTQLRTDGYQVVPTYEDADVVVVNTCGFIDEAKAESLEAIGEAVEANGRVIVTGCLGVESAAIQQAHPRVLAVTGPQQYEAVVGAVHEHAPMTRAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPAGDVLAEAERL 180          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A3N5J4R0_9GAMM (Radical SAM protein (Fragment) n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5J4R0_9GAMM)

HSP 1 Score: 286 bits (731), Expect = 1.660e-95
Identity = 141/177 (79.66%), Postives = 151/177 (85.31%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            A+ KVGFVSLGCPKALVDSERI+TQLR DGY +   Y  ADVVVVNTCGFIDSAKAESL  IGEAL  NG+VIVTGC+GV E  IRA+HP VL+VTGPQQYEAVV AVH HAP+  AHDPF DLVPPQGIKLTPRHYAYLKISEGCNH C+FCIIPSMRGRL SRP  DV+ EAERL
Sbjct:    8 ATPKVGFVSLGCPKALVDSERILTQLRTDGYRISPDYAGADVVVVNTCGFIDSAKAESLDAIGEALEANGRVIVTGCMGVDEAQIRALHPRVLAVTGPQQYEAVVSAVHRHAPMPAAHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHHCTFCIIPSMRGRLVSRPAGDVLGEAERL 184          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: K0CDM1_ALCDB (Ribosomal protein S12 methylthiotransferase RimO n=10 Tax=Alcanivorax TaxID=59753 RepID=K0CDM1_ALCDB)

HSP 1 Score: 292 bits (748), Expect = 1.840e-95
Identity = 143/176 (81.25%), Postives = 154/176 (87.50%), Query Frame = 0
Query:    3 SAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            S KVGF+SLGCPKALVDSERI+TQLR +GYE+  +Y+DADVVVVNTCGFID AKAESL  IGEALSENGKVIVTGC+GV ED IR VHPAVLSVTGPQQYE VV AVH   P    H+PFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIP MRG+LDSRP+ DV+ EAERL
Sbjct:    2 SGKVGFISLGCPKALVDSERILTQLRTEGYEVTPSYDDADVVVVNTCGFIDDAKAESLEAIGEALSENGKVIVTGCMGVEEDNIRKVHPAVLSVTGPQQYEQVVNAVHQVVPPRADHNPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPGMRGKLDSRPVGDVLDEAERL 177          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A1H7K2F0_9GAMM (Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A1H7K2F0_9GAMM)

HSP 1 Score: 291 bits (746), Expect = 3.910e-95
Identity = 141/177 (79.66%), Postives = 157/177 (88.70%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            AS KVGFVSLGCPKALVDSERI+TQLR++GYE+V TY+DADVVVVNTCGFIDSAKAESL  IGEA++ENGKVIVTGC+GV E +IR VHP VL+VTGPQQYE VV AVH   P    HDPFTDLVPPQG+KLTPRHYAYLKISEGCNH CSFCIIPSMRG+L SRP+ DV++EA+RL
Sbjct:    4 ASPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYQDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVEEGSIREVHPNVLAVTGPQQYEQVVNAVHEVVPPKTEHDPFTDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRL 180          
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Match: A0A2I0CSG2_9PSED (Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Pseudomonas pharmacofabricae TaxID=1905276 RepID=A0A2I0CSG2_9PSED)

HSP 1 Score: 291 bits (745), Expect = 5.700e-95
Identity = 142/177 (80.23%), Postives = 158/177 (89.27%), Query Frame = 0
Query:    2 ASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCGFIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQQYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHKCSFCIIPSMRGRLDSRPIEDVMAEAERL 178
            +S KVGFVSLGCPKA VDSERI+TQLR +GY++V TYEDADVVVVNTCGFIDSAKAESL TIGEA++ENGKVIVTGC+GV EDAIR VHP+VL+VTGPQQYE VV AVH   P  + HDPF DLVPPQGIKLTPRHYAYLKISEGCNH CSFCIIPSMRG+L SRP+ +V++EAERL
Sbjct:    5 SSPKVGFVSLGCPKATVDSERILTQLRQEGYQIVPTYEDADVVVVNTCGFIDSAKAESLDTIGEAIAENGKVIVTGCMGVAEDAIRNVHPSVLAVTGPQQYEQVVQAVHEVVPPKIDHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSEAERL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120172.4160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7T8D0_PSESP1.180e-9880.79Radical SAM protein (Fragment) n=1 Tax=Pseudomonas... [more]
A0A7X6Q4Q5_9BURK2.420e-9780.79Radical SAM protein (Fragment) n=1 Tax=Alcaligenac... [more]
A0A359DES5_PSESP3.610e-9779.7830S ribosomal protein S12 methylthiotransferase Ri... [more]
A0A1H5TMJ4_9GAMM4.380e-9782.95Ribosomal protein S12 methylthiotransferase RimO n... [more]
A0A0F2R3R7_9PSED1.640e-9677.97Ribosomal protein S12 methylthiotransferase (Fragm... [more]
A0A7V8TT04_9GAMM3.860e-9681.92Ribosomal protein S12 methylthiotransferase RimO n... [more]
A0A3N5J4R0_9GAMM1.660e-9579.66Radical SAM protein (Fragment) n=1 Tax=Xanthomonad... [more]
K0CDM1_ALCDB1.840e-9581.25Ribosomal protein S12 methylthiotransferase RimO n... [more]
A0A1H7K2F0_9GAMM3.910e-9579.66Ribosomal protein S12 methylthiotransferase RimO n... [more]
A0A2I0CSG2_9PSED5.700e-9580.23Ribosomal protein S12 methylthiotransferase RimO n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013848Methylthiotransferase, N-terminalPFAMPF00919UPF0004coord: 5..88
e-value: 1.0E-20
score: 73.6
IPR013848Methylthiotransferase, N-terminalPROSITEPS51449MTTASE_Ncoord: 4..114
score: 25.125
IPR007197Radical SAMPFAMPF04055Radical_SAMcoord: 143..178
e-value: 4.5E-7
score: 30.4
NoneNo IPR availableGENE3D3.30.750.210coord: 138..178
e-value: 9.6E-16
score: 60.0
NoneNo IPR availableSUPERFAMILY102114Radical SAM enzymescoord: 124..178
IPR038135Methylthiotransferase, N-terminal domain superfamilyGENE3D3.40.50.12160coord: 4..125
e-value: 1.9E-28
score: 100.9
IPR005840Ribosomal protein S12 methylthiotransferase RimOPANTHERPTHR43837FAMILY NOT NAMEDcoord: 2..178
IPR020612Methylthiotransferase, conserved sitePROSITEPS01278MTTASE_RADICALcoord: 141..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120172contigM-pyrifera_M_contig120172:2..535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120172.4160.1mRNA_M-pyrifera_M_contig120172.4160.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig120172 2..535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig120172.4160.1 ID=prot_M-pyrifera_M_contig120172.4160.1|Name=mRNA_M-pyrifera_M_contig120172.4160.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
PASAKVGFVSLGCPKALVDSERIMTQLRLDGYELVATYEDADVVVVNTCG
FIDSAKAESLGTIGEALSENGKVIVTGCLGVHEDAIRAVHPAVLSVTGPQ
QYEAVVGAVHAHAPIDVAHDPFTDLVPPQGIKLTPRHYAYLKISEGCNHK
CSFCIIPSMRGRLDSRPIEDVMAEAERL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013848Methylthiotransferase_N
IPR007197rSAM
IPR038135Methylthiotransferase_N_sf
IPR005840Ribosomal_S12_MeSTrfase_RimO
IPR020612Methylthiotransferase_CS