mRNA_M-pyrifera_M_contig12016.4156.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12016.4156.1
Unique NamemRNA_M-pyrifera_M_contig12016.4156.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: D8LBA3_ECTSI (FTCD_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA3_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.110e-47
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 DPSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAIDA 321
            D SRG+ TVGCTPLVTNYN+LLSTDD+RLA++VTRSLREKDGGL WVE+LTL+R D T+EAACNLLRPKETT A VL  A ++AA +GIRVVD YETGLT+++A+ A
Sbjct:  198 DASRGIATVGCTPLVTNYNILLSTDDKRLASKVTRSLREKDGGLPWVESLTLQRKDGTFEAACNLLRPKETTTANVLAVAEEQAAGVGIRVVDHYETGLTDEEALAA 304          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A7S2UY57_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY57_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.240e-21
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 DPSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLT 300
            DPS+G + +G    V N+NV L T +++LA  VTR++RE+DGGL  VEA+TL      +E ACNLL  ++++P MVL  A   A  +GI + + Y  GLT
Sbjct:    2 DPSKGAICIGAVAPVLNFNVRLKTTNKKLAASVTRAVRERDGGLEKVEAMTLLHDSGNWEVACNLLDSQKSSPTMVLERATAAAKSVGIDIDNHYVIGLT 101          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A804P0U8_MAIZE (Uncharacterized protein n=14 Tax=Zea mays TaxID=4577 RepID=A0A804P0U8_MAIZE)

HSP 1 Score: 78.6 bits (192), Expect = 3.740e-15
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    7 SRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            S GVV VG TP V NYNV L+T D  +A R+ R++ E+ GGL  V+A+ L  GD   E ACNLL P       V     + AA LG+ V   Y T L+ ++ ++
Sbjct:  188 SNGVVVVGATPWVDNYNVPLTTADVSVARRIARAVSERGGGLACVQAMGLAHGDGATEVACNLLHPDAVGADQVQERVSRLAAGLGVGVGQGYFTDLSREKVVE 291          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A811SGE6_9POAL (Hypothetical protein n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811SGE6_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 1.520e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    7 SRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            S+GVV VG T  V NYNV + T D   A R+ R++ E+ GGL  V+A+ L  GD   E ACNLL P       V    R+ AA +G+ V + Y T  ++++ ++
Sbjct:  194 SKGVVVVGATAWVDNYNVPVRTADVGAARRIARAVSERGGGLASVQAMGLAHGDGAAEVACNLLDPAAVGAEQVQERVRRLAAEMGVGVGEGYFTDFSQEKVVE 297          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A835PU85_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PU85_VANPL)

HSP 1 Score: 73.6 bits (179), Expect = 2.510e-13
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 DPSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            +P+ GVV VG T  V NYNV +   +  +A R+ R +  + GGL  V+AL L  GD   E ACNLL P +     + +  ++ AA+ GIRV   Y T  +E++ ++
Sbjct:  179 NPANGVVVVGATRWVQNYNVPIWCTNMEVARRIARRVSGRGGGLETVQALALAHGDGWVEVACNLLDPGKVWADQIQSEIQRMAAVEGIRVGQGYFTDFSEEKIVE 284          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A2T7E3P3_9POAL (Uncharacterized protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7E3P3_9POAL)

HSP 1 Score: 73.6 bits (179), Expect = 3.680e-13
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 1
Query:    7 SRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            S+GVV +G T  V NYNV + T D   A R+ R++ E+ GGL++V+A+ L  G+   E ACNLL P       V    R+ AA  G+ V + Y T  ++++ ++
Sbjct:  230 SKGVVAIGATAWVDNYNVPVHTADVAAAKRIARAVSERGGGLKFVQAMGLTHGEGVTEVACNLLDPASVGAEQVQERVRQLAAEQGLTVGEGYFTDFSQERIVE 333          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A7S0FI61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FI61_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.580e-13
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    4 PSRGVVTVGCTP-LVTNYNVLLSTD-DRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDD--YETGLTEDQAID 318
            P+ G+ TVG  P  V N+N+ LS+   + +A  +T+ LRE+DGG+  VEALTL    D +E ACNLL+P   T  M+  AA + A   G   + +  Y+ G TE Q ++
Sbjct:  204 PNYGIATVGAPPNFVENFNIRLSSRCSKEVAKTLTKKLRERDGGIVGVEALTLPYSGDRFEVACNLLQPSRGTAKMIDDAALEWARANGGESIIEKAYQVGTTEQQCLE 312          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A2I0X392_9ASPA (Uncharacterized protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X392_9ASPA)

HSP 1 Score: 72.0 bits (175), Expect = 9.700e-13
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    1 DPSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAIDA 321
            DP RGVV +G T  V+NYNV + + D     ++ + +  + GG   V+AL L  G+D +E ACNLL P       V    ++ AA  G+ V   Y T  ++D  +D+
Sbjct:  185 DPDRGVVVIGATRWVSNYNVPVRSTDINAVRQIAKRVSGRGGGFESVQALALAHGEDCFEVACNLLEPDRVGADRVQLEVQRLAAEEGLVVEQGYYTDFSQDIIVDS 291          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A7N0TJH0_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TJH0_KALFE)

HSP 1 Score: 72.0 bits (175), Expect = 9.780e-13
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    4 PSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            P++GVV +G TP V NYNV + T D  +A ++ + +  + GGL  V+A+ L  G++T E ACNLL P +     V     + AA  G+ V   Y T   E++ I+
Sbjct:  187 PNKGVVVIGATPWVDNYNVPVFTTDLTVARKIAKRVSGRGGGLPKVQAMALTHGENTIEVACNLLEPCKVGGERVQLEVERLAAEEGLAVGKGYYTDFPEEKIIE 291          
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Match: A0A0K9P830_ZOSMR (Formimidoyltetrahydrofolate cyclodeaminase, Glutamate formimidoyltransferase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P830_ZOSMR)

HSP 1 Score: 72.0 bits (175), Expect = 1.000e-12
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    4 PSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEALTLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLTEDQAID 318
            P++GVV +G T  V NYNV L + D  +A R+ R + E+ GGL  V+A+ L  GDD+ E ACNLL+P+  +   V       A   G+     Y T L ++  ++
Sbjct:  188 PAKGVVLIGATSWVDNYNVPLWSTDMTIAKRIARKVSERGGGLPSVQAMALTHGDDSIEVACNLLKPEIVSAHQVQLQIESLATKEGLIAGKGYFTDLPKETIVE 292          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12016.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBA3_ECTSI4.110e-4773.83FTCD_N domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2UY57_9STRA5.240e-2145.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A804P0U8_MAIZE3.740e-1542.31Uncharacterized protein n=14 Tax=Zea mays TaxID=45... [more]
A0A811SGE6_9POAL1.520e-1339.42Hypothetical protein n=3 Tax=Andropogoneae TaxID=1... [more]
A0A835PU85_VANPL2.510e-1337.74Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A2T7E3P3_9POAL3.680e-1337.50Uncharacterized protein n=5 Tax=Panicum TaxID=4539... [more]
A0A7S0FI61_9STRA6.580e-1340.37Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A2I0X392_9ASPA9.700e-1335.51Uncharacterized protein n=2 Tax=Dendrobium catenat... [more]
A0A7N0TJH0_KALFE9.780e-1337.14Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A0K9P830_ZOSMR1.000e-1237.14Formimidoyltetrahydrofolate cyclodeaminase, Glutam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12016contigM-pyrifera_M_contig12016:4413..5328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.8e-38
Seed eggNOG ortholog2880.D8LBA3
Preferred nameFTCDNL1
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006547,GO:0006548,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009987,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016054,GO:0016740,GO:0016741,GO:0016742,GO:0016829,GO:0016840,GO:0016841,GO:0019439,GO:0019752,GO:0030407,GO:0030409,GO:0030412,GO:0030868,GO:0031090,GO:0031984,GO:0034641,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:0071840,GO:0071944,GO:0097425,GO:0098588,GO:0098791,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.formimidoyltetrahydrofolate cyclodeaminase activity
EggNOG OGs2QS19@2759,COG3404@1
Ec32 ortholog descriptionFormiminotransferase, N-terminal subdomain
Ec32 orthologEc-27_004640.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.1042778-CDS-M-pyrifera_M_contig12016:4412..45501622815721.1042778-CDS-M-pyrifera_M_contig12016:4412..4550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12016 4413..4550 +
1692277537.7955844-CDS-M-pyrifera_M_contig12016:4412..45501692277537.7955844-CDS-M-pyrifera_M_contig12016:4412..4550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12016 4413..4550 +
1622815721.1152546-CDS-M-pyrifera_M_contig12016:5145..53281622815721.1152546-CDS-M-pyrifera_M_contig12016:5145..5328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12016 5146..5328 +
1692277537.8067863-CDS-M-pyrifera_M_contig12016:5145..53281692277537.8067863-CDS-M-pyrifera_M_contig12016:5145..5328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12016 5146..5328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12016.4156.1prot_M-pyrifera_M_contig12016.4156.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12016 4413..5328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12016.4156.1

>prot_M-pyrifera_M_contig12016.4156.1 ID=prot_M-pyrifera_M_contig12016.4156.1|Name=mRNA_M-pyrifera_M_contig12016.4156.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
DPSRGVVTVGCTPLVTNYNVLLSTDDRRLATRVTRSLREKDGGLRWVEAL
TLKRGDDTYEAACNLLRPKETTPAMVLTAARKEAALLGIRVVDDYETGLT
EDQAIDA
back to top

mRNA from alignment at M-pyrifera_M_contig12016:4413..5328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12016.4156.1 ID=mRNA_M-pyrifera_M_contig12016.4156.1|Name=mRNA_M-pyrifera_M_contig12016.4156.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=916bp|location=Sequence derived from alignment at M-pyrifera_M_contig12016:4413..5328+ (Macrocystis pyrifera P11B4 male)
GATCCCTCCCGAGGTGTCGTGACCGTTGGCTGCACCCCGCTGGTAACGAA CTACAACGTCCTTCTGAGCACCGACGACAGGCGACTCGCCACGCGAGTAA CCCGGAGTTTGCGAGAGAAAGACGGCGGGCTCCGTTGGGTACGTCATAAC AACCCTTCTTCGCTCATTTTTCGAGCTCGACAGCAGTCGCCTGACTCGCG GCTACCTGGTCCGTTTTTGCTTTTGCTGAGATGACCTCAAAAGTTTCCCC GGCGAGTTCCTGTATTATCGTAGGAATTATTGATTGTGCCGCCTATATAG ACTAGACATGTATGAATAGTGCAGACATATTTGAGTGCTTCATATGTTAT GTGGTAATATTGAACATGTTTGCGTGTTTTCTGTATGTAGTGTGGTCTGC TGTATTCTCAACATAGTATTGCCAACCAACCACTCATTTCCGTCCCCCAC TGCCGGGCCGTCTTCTTCCCCATGAATATGATGATACCTACTGCTGTACG TGCAAATTGGGTTGGGGCGTTCTGAGCTTTGATTCCCAAGCGGGAGAGGC TGCTCCACCGTCGGACCGTCCGCCGCGCGCTTGGTGTGAACCCCTGCACC CTACCCCATCATGTCCTCAAGTTTTCGTTTTTTTATCTCCGCCCGAGCCT CGGCGACGCGACTCTTTACCGGGCACCCCTCGTCTCGTCGTTTTGTGTAT CGTCCTACTCTCTTTTTTGCCCTTGGAGACTAGGTGGAGGCGCTGACTCT TAAAAGGGGAGATGACACGTACGAGGCCGCATGCAACCTGCTCCGCCCGA AAGAGACGACACCCGCGATGGTGCTCACCGCCGCACGGAAGGAGGCGGCC TTGCTCGGTATCCGCGTGGTGGACGACTACGAGACGGGCCTCACTGAAGA TCAAGCGATCGACGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12016:4413..5328+

>mRNA_M-pyrifera_M_contig12016.4156.1 ID=mRNA_M-pyrifera_M_contig12016.4156.1|Name=mRNA_M-pyrifera_M_contig12016.4156.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig12016:4413..5328+ (Macrocystis pyrifera P11B4 male)
GATCCCTCCCGAGGTGTCGTGACCGTTGGCTGCACCCCGCTGGTAACGAA
CTACAACGTCCTTCTGAGCACCGACGACAGGCGACTCGCCACGCGAGTAA
CCCGGAGTTTGCGAGAGAAAGACGGCGGGCTCCGTTGGGATCCCTCCCGA
GGTGTCGTGACCGTTGGCTGCACCCCGCTGGTAACGAACTACAACGTCCT
TCTGAGCACCGACGACAGGCGACTCGCCACGCGAGTAACCCGGAGTTTGC
GAGAGAAAGACGGCGGGCTCCGTTGGGTGGAGGCGCTGACTCTTAAAAGG
GGAGATGACACGTACGAGGCCGCATGCAACCTGCTCCGCCCGAAAGAGAC
GACACCCGCGATGGTGCTCACCGCCGCACGGAAGGAGGCGGCCTTGCTCG
GTATCCGCGTGGTGGACGACTACGAGACGGGCCTCACTGAAGATCAAGCG
ATCGACGCCGTGGAGGCGCTGACTCTTAAAAGGGGAGATGACACGTACGA
GGCCGCATGCAACCTGCTCCGCCCGAAAGAGACGACACCCGCGATGGTGC
TCACCGCCGCACGGAAGGAGGCGGCCTTGCTCGGTATCCGCGTGGTGGAC
GACTACGAGACGGGCCTCACTGAAGATCAAGCGATCGACGCC
back to top