mRNA_M-pyrifera_M_contig120159.4155.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A7S4HSL1_9EUKA (Structural maintenance of chromosomes protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSL1_9EUKA) HSP 1 Score: 189 bits (479), Expect = 6.040e-53 Identity = 94/129 (72.87%), Postives = 109/129 (84.50%), Query Frame = 1
Query: 19 GAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKK 405
G V RLMI+ I+L NFKSYAG K IGPFH RFSA+VGPNGSGKSNLIDALLFVFGYRTKKLRLNK+SELIHNSNHG GL A VE+ FQQV+D EEY+++P+S+ + RVAT+DNKS+YY+NDKK
Sbjct: 39 GHVTRLMIKKIKLHNFKSYAGVKEIGPFHHRFSAIVGPNGSGKSNLIDALLFVFGYRTKKLRLNKLSELIHNSNHGSGLPFASVEIQFQQVIDTNLELEEYEVVPNSEIRLKRVATADNKSTYYLNDKK 167
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: UPI000CDA6E2C (structural maintenance of chromosomes protein 4-like isoform X1 n=3 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDA6E2C) HSP 1 Score: 161 bits (407), Expect = 9.840e-47 Identity = 81/132 (61.36%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG++T+GPFH+RFS ++GPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ + +QS VEV FQ++ D+EG ++Y+++PDSKF VSR A DN S+Y IN KKK
Sbjct: 82 EPGA-PRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCSVEVHFQKITDKEG--DDYEVIPDSKFCVSRTAYRDNSSTYCINGKKK 210
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A7S1HG93_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HG93_HEMAN) HSP 1 Score: 157 bits (396), Expect = 1.100e-46 Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 1
Query: 10 GERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKK 405
G G RL+I + L NFKSYAG + IGPFH+RFS+VVGPNGSGKSN+IDA+LFVFG + K+LRLNKVSELIH S + + KV V F +++D+ GE+Y+++P ++ + RVATSDN+S YY+NDKK
Sbjct: 14 GGSGPPTRLVITHMTLENFKSYAGVQHIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKKAKQLRLNKVSELIHKSENKMNIPFCKVSVHFNEIIDKNVDGEDYEVVPGTELKMCRVATSDNQSDYYLNDKK 145
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A7K6BYR1_PTIVI (Structural maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Ptilonorhynchus violaceus TaxID=28724 RepID=A0A7K6BYR1_PTIVI) HSP 1 Score: 169 bits (427), Expect = 6.100e-46 Identity = 84/132 (63.64%), Postives = 107/132 (81.06%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG++T+GPFH+RFS ++GPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ R +QS VEV FQ+++D+EG ++Y+++PDSKFSVSR A DN S+YYIN KKK
Sbjct: 73 EPGA-PRLMITHIVNHNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHRDIQSCSVEVHFQKIIDKEG--DDYEVIPDSKFSVSRTACRDNSSTYYINGKKK 201
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A8D2MCW5_ZONAL (Structural maintenance of chromosomes protein 4 n=1 Tax=Zonotrichia albicollis TaxID=44394 RepID=A0A8D2MCW5_ZONAL) HSP 1 Score: 156 bits (395), Expect = 1.080e-45 Identity = 80/132 (60.61%), Postives = 103/132 (78.03%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG+K +GPFH+RFS +VGPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ + + S V+V FQ+++D+EG ++Y+++PDSKF VSR A DN S+Y IN KKK
Sbjct: 57 EPGA-PRLMITHIVNHNFKSYAGEKILGPFHKRFSCIVGPNGSGKSNVIDSLLFVFGYRAQKIRSKKLSVLIHNSDGHQDIPSCSVQVHFQKIIDKEG--DDYEVIPDSKFCVSRTAYRDNSSTYCINGKKK 185
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A852NXC8_9PASS (Structural maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Atrichornis clamosus TaxID=449594 RepID=A0A852NXC8_9PASS) HSP 1 Score: 167 bits (422), Expect = 2.880e-45 Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I + NFKSYAG+KT+GPFH+RFS ++GPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ + +QS VEV FQ+++D+EG ++++++PDSKFSVSR A DN S+YYIN KK
Sbjct: 73 EPGA-PRLMIHHIVIQNFKSYAGEKTLGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCSVEVHFQKIIDKEG--DDFEVIPDSKFSVSRTAYRDNSSTYYINGIKK 201
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A851UXJ8_9PASS (Structural maintenance of chromosomes protein 4 (Fragment) n=1 Tax=Elachura formosa TaxID=1463973 RepID=A0A851UXJ8_9PASS) HSP 1 Score: 166 bits (420), Expect = 5.350e-45 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG++T+GPFH+RFS ++GPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ R +QS VEV FQ++ D+EG ++Y+++PDSKF VSR A DN S+YYIN KKK
Sbjct: 73 EPGA-PRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHRDIQSCSVEVHFQKITDKEG--DDYEVIPDSKFCVSRTAYKDNSSTYYINGKKK 201
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: UPI000528A693 (structural maintenance of chromosomes protein 4-like n=5 Tax=Aves TaxID=8782 RepID=UPI000528A693) HSP 1 Score: 155 bits (391), Expect = 6.360e-45 Identity = 77/132 (58.33%), Postives = 102/132 (77.27%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG++T+GPFH+RFS ++GPNGSGKSN+ID++LFVFGYR +K+R K+S LIHNS+ +QS VE+ FQ+++D+EG ++Y+++P+S F VSR A DN S Y IN KKK
Sbjct: 73 EAGA-PRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHTDIQSCSVEIHFQKIIDKEG--DDYEVIPNSNFCVSRTAYRDNSSVYNINGKKK 201
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A8C3UYH3_CATUS (Structural maintenance of chromosomes protein n=1 Tax=Catharus ustulatus TaxID=91951 RepID=A0A8C3UYH3_CATUS) HSP 1 Score: 166 bits (419), Expect = 7.290e-45 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG++T+GPFH+RFS ++GPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ R +QS VEV FQ++ D+EG ++Y+++PDSKF VSR A DN S+YYIN KKK
Sbjct: 65 EPGA-PRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHRDIQSCSVEVHFQKITDKEG--DDYEVIPDSKFCVSRTAYRDNSSTYYINGKKK 193
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Match: A0A7K7IM73_LOXCU (Structural maintenance of chromosomes protein 4 (Fragment) n=32 Tax=Passeriformes TaxID=9126 RepID=A0A7K7IM73_LOXCU) HSP 1 Score: 164 bits (416), Expect = 1.850e-44 Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 1
Query: 13 ERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSNLIDALLFVFGYRTKKLRLNKVSELIHNSNHGRGLQSAKVEVFFQQVLDREGPGEEYDILPDSKFSVSRVATSDNKSSYYINDKKK 408
E GA PRLMI I NFKSYAG+KT+GPFH+RFS +VGPNGSGKSN+ID+LLFVFGYR +K+R K+S LIHNS+ + + S VEV FQ++ D+EG ++Y+++PDSKF VSR A DN S+YYIN KKK
Sbjct: 73 EPGA-PRLMITHIVNQNFKSYAGEKTLGPFHKRFSCIVGPNGSGKSNIIDSLLFVFGYRAQKIRSKKLSVLIHNSDEHKDISSCSVEVHFQKITDKEG--DDYEVIPDSKFCVSRTAYRDNSSTYYINGKKK 201 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120159.4155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120159.4155.1 >prot_M-pyrifera_M_contig120159.4155.1 ID=prot_M-pyrifera_M_contig120159.4155.1|Name=mRNA_M-pyrifera_M_contig120159.4155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp SAHGERGAVPRLMIQSIELTNFKSYAGKKTIGPFHQRFSAVVGPNGSGKSback to top mRNA from alignment at M-pyrifera_M_contig120159:3..497- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120159.4155.1 ID=mRNA_M-pyrifera_M_contig120159.4155.1|Name=mRNA_M-pyrifera_M_contig120159.4155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig120159:3..497- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120159:3..497- >mRNA_M-pyrifera_M_contig120159.4155.1 ID=mRNA_M-pyrifera_M_contig120159.4155.1|Name=mRNA_M-pyrifera_M_contig120159.4155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig120159:3..497- (Macrocystis pyrifera P11B4 male)back to top |