prot_M-pyrifera_M_contig12009.4151.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12009.4151.1
Unique Nameprot_M-pyrifera_M_contig12009.4151.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length38
Homology
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: D7FQT4_ECTSI (U1 small nuclear ribonucleoprotein C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.510e-12
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYCGTYLTHDSAPGRRQHNRG
Sbjct:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: G4YJ70_PHYSP (Matrin-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YJ70_PHYSP)

HSP 1 Score: 61.2 bits (147), Expect = 1.550e-11
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDS PGR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A225VX70_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VX70_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.610e-11
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDS PGR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A835Z0X0_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0X0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYCGTYLTHDSAPGR+QH RG
Sbjct:    1 MPRYYCDYCGTYLTHDSAPGRKQHMRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A4D9CP67_9STRA (Matrin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP67_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-10
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRY+CDYC TYLTHDSAPGR+QHNRG
Sbjct:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A3R6X1P8_9STRA (Matrin-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X1P8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.170e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A7S2BRH0_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BRH0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.060e-10
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDSAPGR+QH RG
Sbjct:   21 MPRYYCDYCDTYLTHDSAPGRKQHMRG 47          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A6U1MC29_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MC29_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.740e-10
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDSA GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSAQGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A2D4BJ14_PYTIN (Matrin-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ14_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 8.820e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27          
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A080ZAD2_PHYPR (Matrin-type domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZAD2_PHYPR)

HSP 1 Score: 57.8 bits (138), Expect = 9.660e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0
Query:   12 MPRYYCDYCGTYLTHDSAPGRRQHNRG 38
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT4_ECTSI1.510e-12100.00U1 small nuclear ribonucleoprotein C n=1 Tax=Ectoc... [more]
G4YJ70_PHYSP1.550e-1188.89Matrin-type domain-containing protein n=2 Tax=Phyt... [more]
A0A225VX70_9STRA4.610e-1188.89U1 small nuclear ribonucleoprotein C n=1 Tax=Phyto... [more]
A0A835Z0X0_9STRA1.350e-1092.59U1 small nuclear ribonucleoprotein C n=1 Tax=Tribo... [more]
A0A4D9CP67_9STRA1.630e-1088.89Matrin-type domain-containing protein n=1 Tax=Nann... [more]
A0A3R6X1P8_9STRA3.170e-1085.19Matrin-type domain-containing protein n=1 Tax=Apha... [more]
A0A7S2BRH0_9STRA7.060e-1088.89U1 small nuclear ribonucleoprotein C n=1 Tax=Dicty... [more]
A0A6U1MC29_9STRA8.740e-1088.89U1 small nuclear ribonucleoprotein C n=1 Tax=Fibro... [more]
A0A2D4BJ14_PYTIN8.820e-1085.19Matrin-type domain-containing protein n=1 Tax=Pyth... [more]
A0A080ZAD2_PHYPR9.660e-1085.19Matrin-type domain-containing protein n=1 Tax=Phyt... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60coord: 12..38
e-value: 1.9E-13
score: 52.3
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 12..38
e-value: 1.8E-14
score: 53.2
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 12..38
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 15..38
score: 9.296
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 12..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12009contigM-pyrifera_M_contig12009:9051..9164 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12009.4151.1mRNA_M-pyrifera_M_contig12009.4151.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12009 9051..9164 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12009.4151.1 ID=prot_M-pyrifera_M_contig12009.4151.1|Name=mRNA_M-pyrifera_M_contig12009.4151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
NSYSQSEKYDGMPRYYCDYCGTYLTHDSAPGRRQHNRG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf