mRNA_M-pyrifera_M_contig12009.4151.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12009.4151.1
Unique NamemRNA_M-pyrifera_M_contig12009.4151.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: D7FQT4_ECTSI (U1 small nuclear ribonucleoprotein C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.510e-12
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYCGTYLTHDSAPGRRQHNRG
Sbjct:    1 MPRYYCDYCGTYLTHDSAPGRRQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: G4YJ70_PHYSP (Matrin-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YJ70_PHYSP)

HSP 1 Score: 61.2 bits (147), Expect = 1.550e-11
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDS PGR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A225VX70_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VX70_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.610e-11
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDS PGR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSVPGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A835Z0X0_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0X0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-10
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYCGTYLTHDSAPGR+QH RG
Sbjct:    1 MPRYYCDYCGTYLTHDSAPGRKQHMRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A4D9CP67_9STRA (Matrin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP67_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-10
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRY+CDYC TYLTHDSAPGR+QHNRG
Sbjct:    1 MPRYFCDYCQTYLTHDSAPGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A3R6X1P8_9STRA (Matrin-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6X1P8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.170e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A7S2BRH0_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BRH0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.060e-10
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDSAPGR+QH RG
Sbjct:   21 MPRYYCDYCDTYLTHDSAPGRKQHMRG 47
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A6U1MC29_9STRA (U1 small nuclear ribonucleoprotein C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MC29_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.740e-10
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDSA GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSAQGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A2D4BJ14_PYTIN (Matrin-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ14_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 8.820e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27
[Close]
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Match: A0A080ZAD2_PHYPR (Matrin-type domain-containing protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080ZAD2_PHYPR)

HSP 1 Score: 57.8 bits (138), Expect = 9.660e-10
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   34 MPRYYCDYCGTYLTHDSAPGRRQHNRG 114
            MPRYYCDYC TYLTHDS  GR+QHNRG
Sbjct:    1 MPRYYCDYCDTYLTHDSQAGRKQHNRG 27
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12009.4151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT4_ECTSI1.510e-12100.00U1 small nuclear ribonucleoprotein C n=1 Tax=Ectoc... [more]
G4YJ70_PHYSP1.550e-1188.89Matrin-type domain-containing protein n=2 Tax=Phyt... [more]
A0A225VX70_9STRA4.610e-1188.89U1 small nuclear ribonucleoprotein C n=1 Tax=Phyto... [more]
A0A835Z0X0_9STRA1.350e-1092.59U1 small nuclear ribonucleoprotein C n=1 Tax=Tribo... [more]
A0A4D9CP67_9STRA1.630e-1088.89Matrin-type domain-containing protein n=1 Tax=Nann... [more]
A0A3R6X1P8_9STRA3.170e-1085.19Matrin-type domain-containing protein n=1 Tax=Apha... [more]
A0A7S2BRH0_9STRA7.060e-1088.89U1 small nuclear ribonucleoprotein C n=1 Tax=Dicty... [more]
A0A6U1MC29_9STRA8.740e-1088.89U1 small nuclear ribonucleoprotein C n=1 Tax=Fibro... [more]
A0A2D4BJ14_PYTIN8.820e-1085.19Matrin-type domain-containing protein n=1 Tax=Pyth... [more]
A0A080ZAD2_PHYPR9.660e-1085.19Matrin-type domain-containing protein n=1 Tax=Phyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12009contigM-pyrifera_M_contig12009:9051..9164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D7FQT4
Preferred nameSNRPC
KEGG koko:K11095
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030627,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0042802,GO:0042803,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990446,GO:1990904
EggNOG free text desc.pre-mRNA 5'-splice site binding
EggNOG OGsCOG5136@1,KOG3454@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.9137313-CDS-M-pyrifera_M_contig12009:9050..91641622815720.9137313-CDS-M-pyrifera_M_contig12009:9050..9164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12009 9051..9164 +
1692277537.7180524-CDS-M-pyrifera_M_contig12009:9050..91641692277537.7180524-CDS-M-pyrifera_M_contig12009:9050..9164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12009 9051..9164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12009.4151.1prot_M-pyrifera_M_contig12009.4151.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12009 9051..9164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12009.4151.1

>prot_M-pyrifera_M_contig12009.4151.1 ID=prot_M-pyrifera_M_contig12009.4151.1|Name=mRNA_M-pyrifera_M_contig12009.4151.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
NSYSQSEKYDGMPRYYCDYCGTYLTHDSAPGRRQHNRG
back to top

mRNA from alignment at M-pyrifera_M_contig12009:9051..9164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12009.4151.1 ID=mRNA_M-pyrifera_M_contig12009.4151.1|Name=mRNA_M-pyrifera_M_contig12009.4151.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig12009:9051..9164+ (Macrocystis pyrifera P11B4 male)
AATAGTTATTCCCAATCTGAAAAATACGACGGTATGCCGCGCTACTACTG
TGACTACTGTGGCACTTATCTTACCCACGACTCCGCTCCAGGACGACGCC
AACACAATCGAGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12009:9051..9164+

>mRNA_M-pyrifera_M_contig12009.4151.1 ID=mRNA_M-pyrifera_M_contig12009.4151.1|Name=mRNA_M-pyrifera_M_contig12009.4151.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig12009:9051..9164+ (Macrocystis pyrifera P11B4 male)
AATAGTTATTCCCAATCTGAAAAATACGACGGTATGCCGCGCTACTACTG
TGACTACTGTGGCACTTATCTTACCCACGACTCCGCTCCAGGACGACGCC
AACACAATCGAGGTAATAGTTATTCCCAATCTGAAAAATACGACGGTATG
CCGCGCTACTACTGTGACTACTGTGGCACTTATCTTACCCACGACTCCGC
TCCAGGACGACGCCAACACAATCGAGGT
back to top