mRNA_M-pyrifera_M_contig120079.4150.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120079.4150.1
Unique NamemRNA_M-pyrifera_M_contig120079.4150.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A518ACP4_9PLAN (Macrolide export ATP-binding/permease protein MacB n=17 Tax=Planctomycetaceae TaxID=126 RepID=A0A518ACP4_9PLAN)

HSP 1 Score: 144 bits (363), Expect = 1.210e-39
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            +TFLGIQWFVQ+FVMEG TAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILS IYPAISAAKLDPIEALRHE
Sbjct:  373 ITFLGIQWFVQHFVMEGNTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSGIYPAISAAKLDPIEALRHE 446          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A517VSH1_9PLAN (Macrolide export ATP-binding/permease protein MacB n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSH1_9PLAN)

HSP 1 Score: 138 bits (347), Expect = 2.620e-37
Identity = 64/74 (86.49%), Postives = 71/74 (95.95%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            V+FLGIQWFVQNF+MEG T GS+VGRMFFDLQPQIAFWSLPVAFGISVTIG++S IYPA++AAKLDPIEALRHE
Sbjct:  373 VSFLGIQWFVQNFIMEGTTVGSEVGRMFFDLQPQIAFWSLPVAFGISVTIGVISGIYPAVAAAKLDPIEALRHE 446          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A2E2C7D5_9PLAN (ABC transporter ATP-binding protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7D5_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 1.000e-36
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            VTFLGIQWFV+NFVMEG + GS+VGRMFFDL PQIAFWSLPVAFGISVTIGI+S IYPAISAA+LDPIEALRHE
Sbjct:  373 VTFLGIQWFVKNFVMEGASTGSEVGRMFFDLHPQIAFWSLPVAFGISVTIGIISGIYPAISAARLDPIEALRHE 446          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A518GKD1_9PLAN (Macrolide export ATP-binding/permease protein MacB n=3 Tax=Planctopirus TaxID=1649480 RepID=A0A518GKD1_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 2.340e-24
Identity = 45/74 (60.81%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            + F+GIQW V+N V+ GG+  S++ ++F +++PQIAFWSLP+AFGISV IG++  IYPA SAA++DPIEALRHE
Sbjct:  379 LAFMGIQWIVENAVLSGGSGTSEISQLFGNMRPQIAFWSLPIAFGISVGIGVIFGIYPARSAARMDPIEALRHE 452          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A7C2JXP2_9PLAN (ABC transporter permease n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JXP2_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 1.660e-23
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            + F GIQW VQ+FV++  T  S +GRM  D+ PQIA+WSLPVAFGISV IGI+  IYPA +AA +DPIEALRHE
Sbjct:  381 LAFQGIQWIVQSFVLDASTGNSPLGRMLTDMHPQIAWWSLPVAFGISVGIGIVFGIYPARAAAYMDPIEALRHE 454          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A7C4QR75_9PLAN (FtsX-like permease family protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4QR75_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 1.830e-23
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            + F GIQW VQ+FV++  +  S +GRMF D+QP+IA WSLPVAFGISV IG++  IYPA +AA +DPIEALRHE
Sbjct:  398 LAFEGIQWIVQDFVLDASSQASPLGRMFTDMQPKIAMWSLPVAFGISVFIGVVFGIYPARAAAHMDPIEALRHE 471          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A836RKR9_9PLAN (FtsX-like permease family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RKR9_9PLAN)

HSP 1 Score: 100 bits (249), Expect = 3.030e-23
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    4 TFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            +FL I+WFV  FV++  TA SD+GRMF  ++P +A WSLP+AFGISV IGI+  +YPA +AAKLDPIEALRHE
Sbjct:  375 SFLLIRWFVTTFVLDPATAASDIGRMFSQMEPVVAAWSLPLAFGISVGIGIIFGLYPARAAAKLDPIEALRHE 447          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: UPI0019C21071 (ABC transporter permease n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019C21071)

HSP 1 Score: 98.2 bits (243), Expect = 2.240e-22
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            + F+GI+  VQNF++ G +  S +G+MF +++P+IA+WSLPVAFGISV IGI+  +YPA +AAKLDPIEALRHE
Sbjct:  385 LAFMGIKGIVQNFILAGASEVSQMGKMFTEMEPKIAWWSLPVAFGISVGIGIIFGLYPAQAAAKLDPIEALRHE 458          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A1I3F236_9PLAN (Putative ABC transport system permease protein n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3F236_9PLAN)

HSP 1 Score: 97.4 bits (241), Expect = 4.040e-22
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            + F GI++ V N++ME  TA SD+ RMF ++ PQIA WSLPVAFG SV  G++  +YPA SAA+LDPIEALRHE
Sbjct:  375 LAFRGIKYVVTNYIMETSTASSDMSRMFLEMTPQIALWSLPVAFGFSVMTGLVFGVYPARSAARLDPIEALRHE 448          
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Match: A0A3M1V8I6_9BACT (FtsX-like permease family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1V8I6_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 5.360e-21
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTIGILSEIYPAISAAKLDPIEALRHE 222
            VTF G++W + NFV++     SD+GRMF ++QP +  WSL +AF ISV +GI+  IYPA SAA+LDPIEALRHE
Sbjct:  377 VTFRGLRWLLVNFVLDASAVKSDIGRMFAEMQPTVPLWSLVLAFTISVAVGIVFGIYPAKSAAELDPIEALRHE 450          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120079.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518ACP4_9PLAN1.210e-3994.59Macrolide export ATP-binding/permease protein MacB... [more]
A0A517VSH1_9PLAN2.620e-3786.49Macrolide export ATP-binding/permease protein MacB... [more]
A0A2E2C7D5_9PLAN1.000e-3687.84ABC transporter ATP-binding protein n=3 Tax=Planct... [more]
A0A518GKD1_9PLAN2.340e-2460.81Macrolide export ATP-binding/permease protein MacB... [more]
A0A7C2JXP2_9PLAN1.660e-2364.86ABC transporter permease n=1 Tax=Schlesneria palud... [more]
A0A7C4QR75_9PLAN1.830e-2363.51FtsX-like permease family protein n=1 Tax=Schlesne... [more]
A0A836RKR9_9PLAN3.030e-2364.38FtsX-like permease family protein n=1 Tax=Planctom... [more]
UPI0019C210712.240e-2260.81ABC transporter permease n=1 Tax=Candidatus Saccha... [more]
A0A1I3F236_9PLAN4.040e-2260.81Putative ABC transport system permease protein n=1... [more]
A0A3M1V8I6_9BACT5.360e-2158.11FtsX-like permease family protein n=1 Tax=Planctom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120079contigM-pyrifera_M_contig120079:315..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.0
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog344747.PM8797T_18901
Preferred namemacB_1
KEGG koko:K02004
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC-type antimicrobial peptide transport system, permease component
EggNOG OGs2IX11@203682,COG0577@1,COG0577@2
COG Functional cat.V
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.8716426-CDS-M-pyrifera_M_contig120079:314..5391622815720.8716426-CDS-M-pyrifera_M_contig120079:314..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120079 315..539 -
1692277537.7021136-CDS-M-pyrifera_M_contig120079:314..5391692277537.7021136-CDS-M-pyrifera_M_contig120079:314..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120079 315..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120079.4150.1prot_M-pyrifera_M_contig120079.4150.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120079 315..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120079.4150.1

>prot_M-pyrifera_M_contig120079.4150.1 ID=prot_M-pyrifera_M_contig120079.4150.1|Name=mRNA_M-pyrifera_M_contig120079.4150.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
VTFLGIQWFVQNFVMEGGTAGSDVGRMFFDLQPQIAFWSLPVAFGISVTI
GILSEIYPAISAAKLDPIEALRHE*
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mRNA from alignment at M-pyrifera_M_contig120079:315..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120079.4150.1 ID=mRNA_M-pyrifera_M_contig120079.4150.1|Name=mRNA_M-pyrifera_M_contig120079.4150.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig120079:315..539- (Macrocystis pyrifera P11B4 male)
GTCACCTTCCTGGGCATCCAGTGGTTCGTGCAGAACTTCGTGATGGAAGG CGGCACTGCAGGTTCGGATGTGGGCCGCATGTTCTTCGACCTGCAGCCAC AGATCGCCTTCTGGAGTCTGCCGGTTGCCTTTGGTATCTCGGTGACCATC GGAATTCTCTCCGAAATTTACCCTGCGATCTCCGCTGCCAAACTCGATCC GATCGAAGCACTCCGTCACGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120079:315..539-

>mRNA_M-pyrifera_M_contig120079.4150.1 ID=mRNA_M-pyrifera_M_contig120079.4150.1|Name=mRNA_M-pyrifera_M_contig120079.4150.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig120079:315..539- (Macrocystis pyrifera P11B4 male)
GTCACCTTCCTGGGCATCCAGTGGTTCGTGCAGAACTTCGTGATGGAAGG
CGGCACTGCAGGTTCGGATGTGGGCCGCATGTTCTTCGACCTGCAGCCAC
AGATCGCCTTCTGGAGTCTGCCGGTTGCCTTTGGTATCTCGGTGACCATC
GGAATTCTCTCCGAAATTTACCCTGCGATCTCCGCTGCCAAACTCGATCC
GATCGAAGCACTCCGTCACGAGTAAGTCACCTTCCTGGGCATCCAGTGGT
TCGTGCAGAACTTCGTGATGGAAGGCGGCACTGCAGGTTCGGATGTGGGC
CGCATGTTCTTCGACCTGCAGCCACAGATCGCCTTCTGGAGTCTGCCGGT
TGCCTTTGGTATCTCGGTGACCATCGGAATTCTCTCCGAAATTTACCCTG
CGATCTCCGCTGCCAAACTCGATCCGATCGAAGCACTCCGTCACGAGTAA
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