mRNA_M-pyrifera_M_contig120077.4149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120077.4149.1
Unique NamemRNA_M-pyrifera_M_contig120077.4149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120077.4149.1 vs. uniprot
Match: A0A1F3ZDZ6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZDZ6_9PROT)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   64 LFVAVKAGNVAETARMLKCGAHVSARDSKGWSPLLWAAFHGHADVRNL 207
            LF A+KAG+ AETAR++K G H +AR+++G SPL+ AA +   D+  L
Sbjct:   54 LFDAIKAGDYAETARLVKAGIHYTARNAEGESPLMAAAENARLDMVKL 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120077.4149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1F3ZDZ6_9PROT3.530e-550.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120077contigM-pyrifera_M_contig120077:40..249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.828741-CDS-M-pyrifera_M_contig120077:39..2491622815720.828741-CDS-M-pyrifera_M_contig120077:39..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120077 40..249 +
1692277537.6867614-CDS-M-pyrifera_M_contig120077:39..2491692277537.6867614-CDS-M-pyrifera_M_contig120077:39..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120077 40..249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120077.4149.1prot_M-pyrifera_M_contig120077.4149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120077 40..249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120077.4149.1

>prot_M-pyrifera_M_contig120077.4149.1 ID=prot_M-pyrifera_M_contig120077.4149.1|Name=mRNA_M-pyrifera_M_contig120077.4149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
SEYGDEEGRPDVLTVDDARLQLFVAVKAGNVAETARMLKCGAHVSARDSK
GWSPLLWAAFHGHADVRNL*
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mRNA from alignment at M-pyrifera_M_contig120077:40..249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120077.4149.1 ID=mRNA_M-pyrifera_M_contig120077.4149.1|Name=mRNA_M-pyrifera_M_contig120077.4149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig120077:40..249+ (Macrocystis pyrifera P11B4 male)
TCTGAGTATGGGGACGAGGAGGGCCGCCCGGATGTGTTGACGGTGGATGA
TGCACGTCTGCAACTCTTTGTAGCCGTAAAGGCAGGAAATGTGGCGGAGA
CTGCCAGAATGCTCAAGTGTGGGGCGCATGTGAGTGCTAGGGATTCAAAG
GGGTGGTCCCCACTCCTCTGGGCTGCATTTCATGGACATGCTGATGTAAG
GAATCTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120077:40..249+

>mRNA_M-pyrifera_M_contig120077.4149.1 ID=mRNA_M-pyrifera_M_contig120077.4149.1|Name=mRNA_M-pyrifera_M_contig120077.4149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig120077:40..249+ (Macrocystis pyrifera P11B4 male)
TCTGAGTATGGGGACGAGGAGGGCCGCCCGGATGTGTTGACGGTGGATGA
TGCACGTCTGCAACTCTTTGTAGCCGTAAAGGCAGGAAATGTGGCGGAGA
CTGCCAGAATGCTCAAGTGTGGGGCGCATGTGAGTGCTAGGGATTCAAAG
GGGTGGTCCCCACTCCTCTGGGCTGCATTTCATGGACATGCTGATGTAAG
GAATCTCTAATCTGAGTATGGGGACGAGGAGGGCCGCCCGGATGTGTTGA
CGGTGGATGATGCACGTCTGCAACTCTTTGTAGCCGTAAAGGCAGGAAAT
GTGGCGGAGACTGCCAGAATGCTCAAGTGTGGGGCGCATGTGAGTGCTAG
GGATTCAAAGGGGTGGTCCCCACTCCTCTGGGCTGCATTTCATGGACATG
CTGATGTAAGGAATCTCTAA
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