mRNA_M-pyrifera_M_contig120072.4147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120072.4147.1
Unique NamemRNA_M-pyrifera_M_contig120072.4147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120072.4147.1 vs. uniprot
Match: A0A7Y3AGJ2_9DELT (NAD(P)H-binding protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3AGJ2_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 3.690e-5
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   10 RCVVFGGSGEVGGAVLDALVREEGLVDRVTVVTRRPLERFADSPRVEQHVVDMSGDGLEE 189
            +C++FGGSGEVG AV   L++ + +  ++T++ RR +    D  +VEQ VVD S   LEE
Sbjct:    2 KCILFGGSGEVGRAVARELLKSD-VCSKLTMLGRRTVASMQDEAKVEQVVVDTSSPELEE 60
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120072.4147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y3AGJ2_9DELT3.690e-543.33NAD(P)H-binding protein n=1 Tax=Desulfobacterales ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120072contigM-pyrifera_M_contig120072:53..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.7276647-CDS-M-pyrifera_M_contig120072:52..2441622815720.7276647-CDS-M-pyrifera_M_contig120072:52..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120072 53..244 -
1692277537.6507447-CDS-M-pyrifera_M_contig120072:52..2441692277537.6507447-CDS-M-pyrifera_M_contig120072:52..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120072 53..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120072.4147.1prot_M-pyrifera_M_contig120072.4147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120072 53..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120072.4147.1

>prot_M-pyrifera_M_contig120072.4147.1 ID=prot_M-pyrifera_M_contig120072.4147.1|Name=mRNA_M-pyrifera_M_contig120072.4147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MLRRCVVFGGSGEVGGAVLDALVREEGLVDRVTVVTRRPLERFADSPRVE
QHVVDMSGDGLEE*
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mRNA from alignment at M-pyrifera_M_contig120072:53..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120072.4147.1 ID=mRNA_M-pyrifera_M_contig120072.4147.1|Name=mRNA_M-pyrifera_M_contig120072.4147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig120072:53..244- (Macrocystis pyrifera P11B4 male)
ATGCTGCGTCGTTGTGTGGTGTTTGGGGGGAGTGGCGAGGTTGGTGGAGC
GGTGTTGGACGCTTTGGTGCGCGAGGAGGGTCTGGTGGATCGCGTGACGG
TGGTGACGCGTCGTCCTCTGGAACGATTCGCCGATTCCCCCCGCGTGGAG
CAGCACGTGGTGGATATGAGTGGGGATGGGTTGGAGGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120072:53..244-

>mRNA_M-pyrifera_M_contig120072.4147.1 ID=mRNA_M-pyrifera_M_contig120072.4147.1|Name=mRNA_M-pyrifera_M_contig120072.4147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig120072:53..244- (Macrocystis pyrifera P11B4 male)
ATGCTGCGTCGTTGTGTGGTGTTTGGGGGGAGTGGCGAGGTTGGTGGAGC
GGTGTTGGACGCTTTGGTGCGCGAGGAGGGTCTGGTGGATCGCGTGACGG
TGGTGACGCGTCGTCCTCTGGAACGATTCGCCGATTCCCCCCGCGTGGAG
CAGCACGTGGTGGATATGAGTGGGGATGGGTTGGAGGAGTAAATGCTGCG
TCGTTGTGTGGTGTTTGGGGGGAGTGGCGAGGTTGGTGGAGCGGTGTTGG
ACGCTTTGGTGCGCGAGGAGGGTCTGGTGGATCGCGTGACGGTGGTGACG
CGTCGTCCTCTGGAACGATTCGCCGATTCCCCCCGCGTGGAGCAGCACGT
GGTGGATATGAGTGGGGATGGGTTGGAGGAGTAA
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