mRNA_M-pyrifera_M_contig120032.4136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120032.4136.1
Unique NamemRNA_M-pyrifera_M_contig120032.4136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A418FD97_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FD97_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.250e-51
Identity = 95/179 (53.07%), Postives = 127/179 (70.95%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+A+++   V   +VG R+E+F  +++ V+ +L  ++ ++LTPK   DV     AARD  R YSI FVGVNGVGKSTSL+KV  YL+S G+ +M+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA+ A+ H    G D + IDTAGRMQNN   MR LA LV+
Sbjct:   62 LISKNVASEVAQDMCESVISTMVGQRLESFTRIQTVVQTALEAALLRILTPKKSTDVLRQVLAARDQGRCYSIVFVGVNGVGKSTSLSKVAYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAHGNDHGFDCVLIDTAGRMQNNEPLMRALAKLVS 240          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A5D6Y7Z3_9STRA (SRP54 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7Z3_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.800e-51
Identity = 99/179 (55.31%), Postives = 129/179 (72.07%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+A+EL   V   L+G R+E+F  V + VR++L  ++ ++LTPK   DV     AA+   R YSI FVGVNGVGKSTSL+KVC YL+S G+ V++AACDTFR+GAV+QL +H+  L VPLFQ+GY+KDPA VA+ AVK+    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  335 LISKNVASEVADELCESVITTLIGQRLESFTRVSTVVRKALEAALLRILTPKKSTDVLREILAAKAAGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVKVLIAACDTFRSGAVEQLNQHAKVLDVPLFQKGYAKDPAAVAKEAVKYGTENGFDCVLIDTAGRMQNNEPLMRALAKLVS 513          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A397AFG7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AFG7_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.040e-51
Identity = 94/179 (52.51%), Postives = 127/179 (70.95%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+A+++   V   ++G R+E+F  +++ V+ +L  ++ ++LTPK   DV     AARD  R YSI FVGVNGVGKSTSL+KV  YL+S G+ +M+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA+ A+ H    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  114 LISKNVASEVAQDMCESVISTMIGQRLESFTRIQTVVQTALEAALLRILTPKKSTDVLRQVLAARDQGRCYSIVFVGVNGVGKSTSLSKVAYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAHGNDHGFDCVLIDTAGRMQNNEPLMRALAKLVS 292          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A1V9YDI3_9STRA (Signal recognition particle receptor subunit alpha n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDI3_9STRA)

HSP 1 Score: 181 bits (459), Expect = 8.830e-51
Identity = 99/179 (55.31%), Postives = 126/179 (70.39%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI +NV  E+AEEL   V   ++G R+E+F  + + V+++L  ++ ++LTPK   DV     AARD  R YSI FVGVNGVGKSTSL+KVC YL+S G+ VM+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA  AV +    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  330 LIGKNVASEVAEELCESVMTTMIGKRLESFTRIETVVQKALETALMRILTPKKSTDVLREVLAARDAGRCYSIVFVGVNGVGKSTSLSKVCYYLKSRGVKVMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAREAVAYGNEHGFDCVLIDTAGRMQNNEPLMRALAKLVS 508          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A024GCJ8_9STRA (SRP54 domain-containing protein n=9 Tax=Albugo TaxID=65356 RepID=A0A024GCJ8_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.030e-50
Identity = 96/179 (53.63%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAAA-ARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI +NV  E+A+EL   V   +VG R+++F  V + VR +L  ++ ++LTPK   D+  A    +   R YSI FVGVNGVGKSTSL+K+C YL+S G+ VM+AACDTFR+GAV+QL +H+  L VPLF+RGY+K+PA VA+ A++HA A G D + IDTAGRMQNN   MR LA LV+
Sbjct:  318 LIGKNVASEVADELCDSVQSNVVGKRLDSFTRVSTVVRGALEAALLRILTPKKSTDILRAILDVKASGRAYSIVFVGVNGVGKSTSLSKICYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLNVPLFERGYAKNPAAVAQEAIQHATANGFDCVLIDTAGRMQNNEPLMRALAKLVS 496          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: T0QHD4_SAPDV (Fused signal recognition particle receptor n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHD4_SAPDV)

HSP 1 Score: 181 bits (458), Expect = 1.050e-50
Identity = 99/179 (55.31%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LIA+NV  E+AEEL   V   ++G R+E+F  +++ V+++L  ++ ++LTPK   DV     AAR+  R YSI FVGVNGVGKSTSL+KVC YL+S G+ VM+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA  AV +    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  319 LIAKNVATEVAEELCESVMTTMIGKRLESFTRIQTVVQKALETALLRILTPKKSTDVLREVLAAREAGRCYSIVFVGVNGVGKSTSLSKVCYYLKSRGVKVMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPAAVARDAVAYGNDNGFDCVLIDTAGRMQNNEPLMRALAKLVS 497          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A485LAK6_9STRA (Aste57867_18399 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAK6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.430e-50
Identity = 97/179 (54.19%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+AE+L   V   +VG R+E+F  +++ V+++L  ++ ++LTPK   DV     AAR+  R YSI FVGVNGVGKSTSL+KVC YL+S G+ +M+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA  A+ H    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  308 LISKNVATEVAEQLCESVMTTIVGQRLESFTRIQTVVQKALEAALLRILTPKKSTDVLREVLAAREQGRCYSIVFVGVNGVGKSTSLSKVCYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPATVARDAIAHGNEHGFDCVLIDTAGRMQNNEPLMRALAKLVS 486          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: K3WPU5_GLOUD (SRP54 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPU5_GLOUD)

HSP 1 Score: 180 bits (456), Expect = 2.470e-50
Identity = 99/179 (55.31%), Postives = 128/179 (71.51%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAAA-ARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+A+EL   V   LVG R+E+F  V + VR++L  ++ ++LTPK   DV      A+   R YSI FVGVNGVGKSTSL+KVC YL+S G+ V++AACDTFR+GAV+QL +H+  L VPLFQ+GY+KDPA VA+ AVK+    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  332 LISKNVASEVADELCESVVTTLVGQRLESFTRVSTVVRKALEAALLRILTPKKSTDVLREILEAKAAGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVKVLIAACDTFRSGAVEQLNQHAKVLDVPLFQKGYAKDPAAVAKEAVKYGTDNGFDCVLIDTAGRMQNNEPLMRALAKLVS 510          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A8K1FLZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLZ4_PYTOL)

HSP 1 Score: 179 bits (454), Expect = 4.470e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAAA-ARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+AEEL   V   LVG R+E+F  V + VR++L  ++ ++LTPK   DV      A+   R YSI FVGVNGVGKSTSL+KVC YL+S G+ VM+AACDTFR+GAV+QL +H+  L VPLF++GY++DPA VA  AVK+    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  327 LISKNVASEVAEELCESVITTLVGQRLESFTRVSTVVRKALEAALLRILTPKKSTDVLREIMDAKAAGRAYSIVFVGVNGVGKSTSLSKVCYYLKSKGVKVMIAACDTFRSGAVEQLNQHAKVLDVPLFEKGYARDPAAVARDAVKYGTENGYDCVLIDTAGRMQNNESLMRALAKLVS 505          
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Match: A0A024U9C8_9STRA (SRP54 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 7.430e-50
Identity = 96/179 (53.63%), Postives = 129/179 (72.07%), Query Frame = 1
Query:    1 LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLTPKAVPDVAAAA-AARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSVMMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAKGIDALCIDTAGRMQNNAKYMRELASLVA 534
            LI++NV  E+A+EL   V   +VG R+E+F  +++ V+++L  ++ ++LTPK   DV     AARD  R +SI FVGVNGVGKSTSL+KVC YL+S G+ +M+AACDTFR+GAV+QL +H   L VPLF+RGY+KDPA VA+ A+ +    G D + IDTAGRMQNN   MR LA LV+
Sbjct:  316 LISKNVATEVAQELCESVISTMVGQRLESFTRIQTVVQKALEAALLRILTPKKSTDVLREVLAARDQGRCFSIVFVGVNGVGKSTSLSKVCYYLKSRGVKIMIAACDTFRSGAVEQLNQHCKVLDVPLFERGYAKDPASVAKDAIAYGNDNGFDCVLIDTAGRMQNNEPLMRALAKLVS 494          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120032.4136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A418FD97_9STRA1.250e-5153.07Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5D6Y7Z3_9STRA6.800e-5155.31SRP54 domain-containing protein n=1 Tax=Pythium br... [more]
A0A397AFG7_9STRA7.040e-5152.51Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A1V9YDI3_9STRA8.830e-5155.31Signal recognition particle receptor subunit alpha... [more]
A0A024GCJ8_9STRA1.030e-5053.63SRP54 domain-containing protein n=9 Tax=Albugo Tax... [more]
T0QHD4_SAPDV1.050e-5055.31Fused signal recognition particle receptor n=1 Tax... [more]
A0A485LAK6_9STRA2.430e-5054.19Aste57867_18399 protein n=1 Tax=Aphanomyces stella... [more]
K3WPU5_GLOUD2.470e-5055.31SRP54 domain-containing protein n=1 Tax=Globispora... [more]
A0A8K1FLZ4_PYTOL4.470e-5055.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024U9C8_9STRA7.430e-5053.63SRP54 domain-containing protein n=2 Tax=Aphanomyce... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120032contigM-pyrifera_M_contig120032:3..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog36331.EPrPI00000014714
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.Signal recognition particle receptor subunit alpha. Source PGD
EggNOG OGs1MDDC@121069,COG0552@1,KOG0781@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.2567277-CDS-M-pyrifera_M_contig120032:2..5391622815720.2567277-CDS-M-pyrifera_M_contig120032:2..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120032 3..539 -
1692277537.4578295-CDS-M-pyrifera_M_contig120032:2..5391692277537.4578295-CDS-M-pyrifera_M_contig120032:2..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120032 3..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120032.4136.1prot_M-pyrifera_M_contig120032.4136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120032 3..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120032.4136.1

>prot_M-pyrifera_M_contig120032.4136.1 ID=prot_M-pyrifera_M_contig120032.4136.1|Name=mRNA_M-pyrifera_M_contig120032.4136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
LIARNVNPEIAEELVRGVGEGLVGSRVEAFEDVRSTVRESLRHSIEKLLT
PKAVPDVAAAAAARDPSRPYSIAFVGVNGVGKSTSLAKVCAYLRSNGLSV
MMAACDTFRAGAVDQLERHSSALGVPLFQRGYSKDPAGVAEAAVKHAAAK
GIDALCIDTAGRMQNNAKYMRELASLVAR
back to top

mRNA from alignment at M-pyrifera_M_contig120032:3..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120032.4136.1 ID=mRNA_M-pyrifera_M_contig120032.4136.1|Name=mRNA_M-pyrifera_M_contig120032.4136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig120032:3..539- (Macrocystis pyrifera P11B4 male)
TTGATTGCTCGCAATGTTAACCCAGAAATTGCAGAGGAATTGGTTCGAGG GGTTGGGGAAGGGTTGGTTGGGAGTCGTGTGGAAGCGTTTGAGGACGTGA GGAGTACAGTGCGAGAGAGTCTTCGTCACTCGATTGAGAAGCTTCTCACC CCAAAGGCTGTCCCTGACGTGGCAGCAGCAGCAGCAGCAAGAGATCCTTC TCGCCCATACTCGATCGCGTTCGTTGGGGTGAATGGGGTGGGCAAATCCA CGTCCCTGGCCAAGGTGTGTGCCTATTTGCGTTCCAACGGACTGAGTGTG ATGATGGCGGCGTGTGACACGTTCCGCGCAGGTGCGGTGGATCAGTTGGA GCGGCATTCGTCGGCATTGGGCGTTCCATTGTTCCAGAGGGGATACTCGA AAGACCCAGCAGGAGTGGCTGAGGCGGCGGTGAAACATGCGGCGGCAAAG GGCATTGATGCTTTGTGCATCGACACTGCCGGGAGGATGCAAAACAACGC CAAGTACATGCGCGAGCTGGCGTCGCTGGTGGCCAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120032:3..539-

>mRNA_M-pyrifera_M_contig120032.4136.1 ID=mRNA_M-pyrifera_M_contig120032.4136.1|Name=mRNA_M-pyrifera_M_contig120032.4136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig120032:3..539- (Macrocystis pyrifera P11B4 male)
TTGATTGCTCGCAATGTTAACCCAGAAATTGCAGAGGAATTGGTTCGAGG
GGTTGGGGAAGGGTTGGTTGGGAGTCGTGTGGAAGCGTTTGAGGACGTGA
GGAGTACAGTGCGAGAGAGTCTTCGTCACTCGATTGAGAAGCTTCTCACC
CCAAAGGCTGTCCCTGACGTGGCAGCAGCAGCAGCAGCAAGAGATCCTTC
TCGCCCATACTCGATCGCGTTCGTTGGGGTGAATGGGGTGGGCAAATCCA
CGTCCCTGGCCAAGGTGTGTGCCTATTTGCGTTCCAACGGACTGAGTGTG
ATGATGGCGGCGTGTGACACGTTCCGCGCAGGTGCGGTGGATCAGTTGGA
GCGGCATTCGTCGGCATTGGGCGTTCCATTGTTCCAGAGGGGATACTCGA
AAGACCCAGCAGGAGTGGCTGAGGCGGCGGTGAAACATGCGGCGGCAAAG
GGCATTGATGCTTTGTGCATCGACACTGCCGGGAGGATGCAAAACAACGC
CAAGTACATGCGCGAGCTGGCGTCGCTGGTGGCCAGGTTGATTGCTCGCA
ATGTTAACCCAGAAATTGCAGAGGAATTGGTTCGAGGGGTTGGGGAAGGG
TTGGTTGGGAGTCGTGTGGAAGCGTTTGAGGACGTGAGGAGTACAGTGCG
AGAGAGTCTTCGTCACTCGATTGAGAAGCTTCTCACCCCAAAGGCTGTCC
CTGACGTGGCAGCAGCAGCAGCAGCAAGAGATCCTTCTCGCCCATACTCG
ATCGCGTTCGTTGGGGTGAATGGGGTGGGCAAATCCACGTCCCTGGCCAA
GGTGTGTGCCTATTTGCGTTCCAACGGACTGAGTGTGATGATGGCGGCGT
GTGACACGTTCCGCGCAGGTGCGGTGGATCAGTTGGAGCGGCATTCGTCG
GCATTGGGCGTTCCATTGTTCCAGAGGGGATACTCGAAAGACCCAGCAGG
AGTGGCTGAGGCGGCGGTGAAACATGCGGCGGCAAAGGGCATTGATGCTT
TGTGCATCGACACTGCCGGGAGGATGCAAAACAACGCCAAGTACATGCGC
GAGCTGGCGTCGCTGGTGGCCAGG
back to top