mRNA_M-pyrifera_M_contig120001.4126.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120001.4126.1
Unique NamemRNA_M-pyrifera_M_contig120001.4126.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120001.4126.1 vs. uniprot
Match: F0ZMW4_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMW4_DICPU)

HSP 1 Score: 53.5 bits (127), Expect = 2.580e-5
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   40 IGERACDETVWVSDRDIKCKVPAGVGLDLTVSVNAGGQLSTPQHRFDY 183
            IG+  C ET+WV  + IKCKVPAG G+ L++ V  GG  S   + F Y
Sbjct: 1736 IGDNLCKETIWVDSKTIKCKVPAGSGIGLSIEVYIGGLKSALNNYFSY 1783
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120001.4126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
F0ZMW4_DICPU2.580e-547.92Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120001contigM-pyrifera_M_contig120001:78..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.7562988-CDS-M-pyrifera_M_contig120001:77..5391622815719.7562988-CDS-M-pyrifera_M_contig120001:77..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120001 78..539 -
1692277537.3005924-CDS-M-pyrifera_M_contig120001:77..5391692277537.3005924-CDS-M-pyrifera_M_contig120001:77..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120001 78..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120001.4126.1prot_M-pyrifera_M_contig120001.4126.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120001 78..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120001.4126.1

>prot_M-pyrifera_M_contig120001.4126.1 ID=prot_M-pyrifera_M_contig120001.4126.1|Name=mRNA_M-pyrifera_M_contig120001.4126.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LNFGQQDFKPVAFIGERACDETVWVSDRDIKCKVPAGVGLDLTVSVNAGG
QLSTPQHRFDYSGASPPPTVLRVHSLTLLTSFAVPTLASFEPKVVTTRPN
TTLHFTGSDLGPGVGVGAGDQLCGQTVLGGELKSGSCSLDAGVGKDLPIS
VLVG
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mRNA from alignment at M-pyrifera_M_contig120001:78..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120001.4126.1 ID=mRNA_M-pyrifera_M_contig120001.4126.1|Name=mRNA_M-pyrifera_M_contig120001.4126.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig120001:78..539- (Macrocystis pyrifera P11B4 male)
CTCAACTTTGGACAGCAAGATTTCAAGCCAGTTGCCTTCATTGGAGAGCG
TGCCTGCGACGAGACAGTGTGGGTTTCAGACCGTGACATCAAGTGCAAGG
TCCCCGCCGGCGTCGGTCTGGACTTGACAGTGTCCGTGAACGCAGGTGGA
CAGCTGTCTACTCCGCAGCACAGATTTGACTATAGTGGTGCGTCCCCCCC
TCCCACAGTGCTGCGCGTGCACTCTCTCACACTTCTCACCTCGTTCGCAG
TTCCCACGCTCGCCTCGTTTGAGCCCAAGGTGGTTACAACCAGGCCAAAC
ACAACGCTTCACTTCACTGGGTCGGATCTTGGCCCCGGAGTGGGTGTGGG
TGCGGGCGACCAGCTGTGTGGGCAGACTGTGCTTGGCGGTGAGCTCAAAA
GTGGCTCTTGCTCCCTCGATGCGGGAGTCGGCAAGGATCTTCCGATCAGC
GTACTCGTGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120001:78..539-

>mRNA_M-pyrifera_M_contig120001.4126.1 ID=mRNA_M-pyrifera_M_contig120001.4126.1|Name=mRNA_M-pyrifera_M_contig120001.4126.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig120001:78..539- (Macrocystis pyrifera P11B4 male)
CTCAACTTTGGACAGCAAGATTTCAAGCCAGTTGCCTTCATTGGAGAGCG
TGCCTGCGACGAGACAGTGTGGGTTTCAGACCGTGACATCAAGTGCAAGG
TCCCCGCCGGCGTCGGTCTGGACTTGACAGTGTCCGTGAACGCAGGTGGA
CAGCTGTCTACTCCGCAGCACAGATTTGACTATAGTGGTGCGTCCCCCCC
TCCCACAGTGCTGCGCGTGCACTCTCTCACACTTCTCACCTCGTTCGCAG
TTCCCACGCTCGCCTCGTTTGAGCCCAAGGTGGTTACAACCAGGCCAAAC
ACAACGCTTCACTTCACTGGGTCGGATCTTGGCCCCGGAGTGGGTGTGGG
TGCGGGCGACCAGCTGTGTGGGCAGACTGTGCTTGGCGGTGAGCTCAAAA
GTGGCTCTTGCTCCCTCGATGCGGGAGTCGGCAAGGATCTTCCGATCAGC
GTACTCGTGGGCCTCAACTTTGGACAGCAAGATTTCAAGCCAGTTGCCTT
CATTGGAGAGCGTGCCTGCGACGAGACAGTGTGGGTTTCAGACCGTGACA
TCAAGTGCAAGGTCCCCGCCGGCGTCGGTCTGGACTTGACAGTGTCCGTG
AACGCAGGTGGACAGCTGTCTACTCCGCAGCACAGATTTGACTATAGTGG
TGCGTCCCCCCCTCCCACAGTGCTGCGCGTGCACTCTCTCACACTTCTCA
CCTCGTTCGCAGTTCCCACGCTCGCCTCGTTTGAGCCCAAGGTGGTTACA
ACCAGGCCAAACACAACGCTTCACTTCACTGGGTCGGATCTTGGCCCCGG
AGTGGGTGTGGGTGCGGGCGACCAGCTGTGTGGGCAGACTGTGCTTGGCG
GTGAGCTCAAAAGTGGCTCTTGCTCCCTCGATGCGGGAGTCGGCAAGGAT
CTTCCGATCAGCGTACTCGTGGGC
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