mRNA_M-pyrifera_M_contig101915.413.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A813AS11_9DINO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AS11_9DINO) HSP 1 Score: 288 bits (736), Expect = 1.360e-90 Identity = 136/222 (61.26%), Postives = 175/222 (78.83%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 KRF + R D+ L+K SR + ++ +II +A+VQA+ATGNWSL+RF+M++AG+TQQ++R SY+S++G+M R+ SQFEKTRK AGPRALQPSQWGM+CPSDTPEGEACGL K+LALLTHVT D + PV RLC DLG+ED L GEE+NAG FL+F+NG ++G HRRPH A R+R RR GI+ E VSVY+H + +VH++TDGGRVCRPLI+V Sbjct: 368 KRFNGELSRQADNVLSKPSRASSFDVVKHVRPDIITNAMVQAIATGNWSLKRFKMEQAGMTQQVTRHSYLSAMGLMARVQSQFEKTRKAAGPRALQPSQWGMLCPSDTPEGEACGLAKSLALLTHVTTDEEPAPVHRLCFDLGMEDIEMLAGEEINAGNFLVFLNGLLVGAHRRPHEFARRMRLLRRLGIIGEFVSVYLHEDQHSVHISTDGGRVCRPLIIV 589
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO) HSP 1 Score: 289 bits (740), Expect = 9.550e-87 Identity = 142/222 (63.96%), Postives = 174/222 (78.38%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 KRF ++RR D+ L+K +R ++ + I + QAL+TGNW+L+RFRM+RAG+TQQLSRLSYIS+LGMMTR+ SQFEKTRKV+GPRALQPSQWGM+CPSDTPEGEACGLVKNLALL HVT D D PV RLC D+GVED L GEEL+ GA+L+F+NG +LG HRRP+ A R RR GIL E VSVYVH LRAV++A+DGGR+CRP+++V Sbjct: 675 KRFNSDLRRAADAVLSKPNRAAAFDVINSVRTDTITMGMTQALSTGNWTLKRFRMERAGVTQQLSRLSYISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALLAHVTSDRDPEPVRRLCFDMGVEDAECLCGEELHGGAYLVFLNGLLLGAHRRPYDFAKAFRIFRRAGILGEFVSVYVHDGLRAVNIASDGGRICRPVVVV 896
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1CG01_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG01_9STRA) HSP 1 Score: 275 bits (704), Expect = 2.900e-84 Identity = 133/222 (59.91%), Postives = 169/222 (76.13%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 K F + R D L K++R P A ++++++I + + L+TGNW L RF+MDR G+TQ +SRLSY+S+LGMMTR+ SQF+K+ KV+GPRALQPSQWGM+CPS+TPEGE CGLVKNLALLTHVT D D PV RL VDLG+ED L GEE+N+ A+L+F+NG I+G HR PH A R+R RR G+L E+VSVYVH RAVH+A+D GRVCRPLI+V Sbjct: 59 KSFNKELTRQADGALKKKARAMPFDALMYIREDMITNKMETVLSTGNWKLSRFKMDRQGVTQLVSRLSYLSALGMMTRVTSQFQKSVKVSGPRALQPSQWGMLCPSETPEGEQCGLVKNLALLTHVTTDEDPTPVRRLAVDLGMEDTELLGGEEINSSAYLVFINGLIMGVHRHPHRFAERLRALRRVGLLGEYVSVYVHDGQRAVHLASDSGRVCRPLIIV 280
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK) HSP 1 Score: 265 bits (677), Expect = 6.230e-84 Identity = 128/223 (57.40%), Postives = 170/223 (76.23%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 KRF + R D L+K +R + ++ + I V +A+GNW L+RF+M+RAG++Q L+RLSY+S +GMMTR+NSQFEK++KV+GPRALQPSQWG++CP+DTPEGEACGLVKNLALL HVT DA++ PV R C+DLGVED L G E++AG AFL+F+NG ++G HRRP R R RRQG+++E VSVY+HA RAV++A DGGR+CRPL++V Sbjct: 3 KRFNAELARQADMVLSKANRAAAFDIVKTIRPDTIAQGFVHCIASGNWVLKRFKMERAGVSQVLNRLSYMSCVGMMTRVNSQFEKSQKVSGPRALQPSQWGVLCPADTPEGEACGLVKNLALLAHVTSDAEERPVLRACLDLGVEDVALLSGAEVHAGQAFLVFLNGLLIGAHRRPREFVRRFRFLRRQGLVTEFVSVYLHAPQRAVYLAADGGRLCRPLLVV 225
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S3VGN0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGN0_9STRA) HSP 1 Score: 274 bits (700), Expect = 2.960e-83 Identity = 132/223 (59.19%), Postives = 170/223 (76.23%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELN-AGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 K F +++R D L+K +R + ++ + I + A+++GNW L+RFRMDRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D P+ RLC DLGVED + G E+N AGA+L+F+NG ILG HRRP L +RT RRQG E VS+Y+H +++H++TDGGRVCRP+I+V Sbjct: 88 KLFNKDLKRQADMVLSKANRAQAFDVVKCIRPDTITHGMSTAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCRDLGVEDVNMMTGNEINSAGAYLVFLNGLILGGHRRPRYLVKMLRTMRRQGQAGEFVSLYLHQGQKSIHISTDGGRVCRPMIIV 310
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA) HSP 1 Score: 277 bits (709), Expect = 1.350e-82 Identity = 134/223 (60.09%), Postives = 168/223 (75.34%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 K F N++R D L +R + ++ + I + +V A+++GNW L+RFR+DRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D P+ RLC+DLGVED L G E+N+ GA+L+F+NG +LG H RP +RT RRQG E VSVY+H AVH+ATDGGRVCRPLI+V Sbjct: 582 KLFNANLKREADRVLRHTNRAQAFDVVKIIRPDTITNGMVHAISSGNWVLKRFRVDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCIDLGVEDVNMLTGNEINSMGAYLVFLNGLLLGAHTRPRQFVQDLRTMRRQGQAGEFVSVYLHEGQHAVHIATDGGRVCRPLIIV 804
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A1Z5KRH4_FISSO (DNA-directed RNA polymerase subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH4_FISSO) HSP 1 Score: 275 bits (704), Expect = 3.920e-82 Identity = 137/222 (61.71%), Postives = 171/222 (77.03%), Query Frame = 1 Query: 7 FQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADD-GPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 F ++R D L+K +R + ++ + I + ++ A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL+H+T D DD P+ RLC DLGVED + G ELN+ AFL+F+NG ILG H RP L +R RR+G+ E VSVY+H E RAVH+ATDGGRVCRPLI+V Sbjct: 463 FNKELKRQADLVLSKPNRAEAFDVVKTIRPDTITNGMINAISTGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLSHITTDEDDTNPIERLCRDLGVEDVRRMSGNELNSKDAFLVFLNGLILGIHLRPLQLVEDLRKMRRRGLAGEFVSVYLHEEQRAVHIATDGGRVCRPLIIV 684
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA) HSP 1 Score: 274 bits (701), Expect = 5.130e-82 Identity = 136/223 (60.99%), Postives = 170/223 (76.23%), Query Frame = 1 Query: 1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 KR +++RH DS L+K +R P + ++ + + V AL+TGNW LRRFRMDRAG+TQ LSRLSYIS+LGMMTR+NS+FEKTRKV+GPRALQPSQWGM+CP+DTPEGEACGLVKNLALL HVT D D P+ RLC DLGVED + G ELN +L+ VNG I+G H P LA R+R RR+G + E VS+Y+H+ RAV++A+DGGRVCRPL++V Sbjct: 383 KRMNADLKRHADSVLSKANRTKPFDIIKNIRTDTLTQGFVHALSTGNWVLRRFRMDRAGVTQVLSRLSYISALGMMTRLNSEFEKTRKVSGPRALQPSQWGMLCPADTPEGEACGLVKNLALLAHVTNDEDAAPIIRLCFDLGVEDVSYVSGAELNRQDVYLVIVNGLIIGIHPDPQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVV 605
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: B7FVD4_PHATC (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVD4_PHATC) HSP 1 Score: 270 bits (691), Expect = 2.030e-80 Identity = 134/222 (60.36%), Postives = 170/222 (76.58%), Query Frame = 1 Query: 7 FQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVD-ADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666 F +++R D L+K +R + ++ + I + ++ A+ATGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D AD P+ R+C DLGVED + G E+N+ AFL+F+NG ILG H RP L +R RR+G+ E VSVY+H E AVH+ATDGGRVCRPL++V Sbjct: 428 FNKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIV 649
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1V6C3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA) HSP 1 Score: 247 bits (630), Expect = 4.020e-80 Identity = 121/199 (60.80%), Postives = 152/199 (76.38%), Query Frame = 1 Query: 46 NKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGG 639 +K +R + ++ + I +V A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D P+ RL DLGVED L G E+++ G FL+F+NG ILG H +PH +RT RR+G+ E VSVY+H RAVH+ATDGG Sbjct: 1 SKPNRAQAFDVVKTIRPDTITYGMVTAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTQPIRRLSRDLGVEDVKRLTGNEIHSRGGFLVFLNGLILGLHTKPHEFVASLRTMRRRGLTGEFVSVYLHEGQRAVHIATDGG 199 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101915.413.1 >prot_M-pyrifera_M_contig101915.413.1 ID=prot_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDback to top mRNA from alignment at M-pyrifera_M_contig101915:1..666- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig101915.413.1 ID=mRNA_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig101915:1..666- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101915:1..666- >mRNA_M-pyrifera_M_contig101915.413.1 ID=mRNA_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig101915:1..666- (Macrocystis pyrifera P11B4 male)back to top |