mRNA_M-pyrifera_M_contig119978.4121.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119978.4121.1
Unique NamemRNA_M-pyrifera_M_contig119978.4121.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: UPI00131E878C (hypothetical protein n=1 Tax=Streptomyces sp. NRRL F-4707 TaxID=1519496 RepID=UPI00131E878C)

HSP 1 Score: 53.1 bits (126), Expect = 3.900e-8
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIMVS 156
            E+GV +KDI+LV+ Q  C+REKA+ VL+++ GD+VNAIM +
Sbjct:   18 ETGVDQKDIDLVMAQVNCSREKAVRVLRESGGDLVNAIMAA 58          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A6S9LQR9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LQR9_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 4.390e-8
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            E GV +KDIELV+TQA CTR KA++ LK  +GDIVNAIM
Sbjct:  150 EEGVDQKDIELVMTQAGCTRPKAVKALKNNSGDIVNAIM 188          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A7R8WJ05_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WJ05_9CRUS)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-8
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            ESGV EKDI+LV+TQA C+R KAI+ LK  N DIVNAIM
Sbjct:  182 ESGVEEKDIDLVMTQASCSRPKAIKALKNNNNDIVNAIM 220          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A0A1WFP3_ZEUCU (Nascent polypeptide-associated complex subunit alpha n=4 Tax=Tephritidae TaxID=7211 RepID=A0A0A1WFP3_ZEUCU)

HSP 1 Score: 55.8 bits (133), Expect = 5.760e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            E+GV EKDIELV+TQA  TR KAI  LKK N DIVNAIM
Sbjct:  174 ETGVDEKDIELVITQANTTRAKAIRALKKHNNDIVNAIM 212          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A034WLZ1_BACDO (Nascent polypeptide-associated complex subunit alpha (Fragment) n=7 Tax=Endopterygota TaxID=33392 RepID=A0A034WLZ1_BACDO)

HSP 1 Score: 55.8 bits (133), Expect = 6.860e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            E+GV EKDIELV+TQA  TR KAI  LKK N DIVNAIM
Sbjct:  195 ETGVDEKDIELVITQANTTRAKAIRALKKHNNDIVNAIM 233          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A7K3Q1K7_STRDI (HYPK_UBA domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A7K3Q1K7_STRDI)

HSP 1 Score: 52.8 bits (125), Expect = 8.440e-8
Identity = 22/41 (53.66%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIMVS 156
            E+GV +KDI+LV+ Q  C+REKA+ VL+++ GD++NAIM +
Sbjct:   36 ETGVDQKDIDLVMAQVNCSREKAVRVLRESGGDLINAIMAA 76          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: Q6XIT5_DROYA (Similar to Drosophila melanogaster Nacalpha (Fragment) n=1 Tax=Drosophila yakuba TaxID=7245 RepID=Q6XIT5_DROYA)

HSP 1 Score: 52.0 bits (123), Expect = 1.290e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            ++GV +KDIELV+TQA  TR KAI+ LK  N DIVNAIM
Sbjct:   23 DTGVDDKDIELVITQANTTRAKAIKALKNNNHDIVNAIM 61          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A6S8E684_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8E684_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.330e-7
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            E+GV+ KDIE+V+ Q+ CTR +A+E LKK +GDIVNAIM
Sbjct:  157 ETGVSPKDIEIVMAQSNCTRAEAVEALKKNSGDIVNAIM 195          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: UPI00053F9FEB (nascent polypeptide-associated complex subunit alpha-like protein 4 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F9FEB)

HSP 1 Score: 54.7 bits (130), Expect = 1.410e-7
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   34 ESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM 150
            E+GV  +DIELV+TQA  TR KA+E LKK+NGDIV+AIM
Sbjct:  165 ETGVEPRDIELVMTQAGATRSKAVEALKKSNGDIVSAIM 203          
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Match: A0A8H7PFU4_MORIS (Nascent polypeptide-associated complex subunit alpha n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PFU4_MORIS)

HSP 1 Score: 53.9 bits (128), Expect = 2.320e-7
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   40 GVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIMVS 156
            GV EKDIELVV+QA  +R KA++ LK  N DIVNAIMVS
Sbjct:  138 GVDEKDIELVVSQANVSRNKAVKALKNNNNDIVNAIMVS 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119978.4121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00131E878C3.900e-856.10hypothetical protein n=1 Tax=Streptomyces sp. NRRL... [more]
A0A6S9LQR9_HETAK4.390e-869.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R8WJ05_9CRUS5.430e-871.79Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A0A1WFP3_ZEUCU5.760e-874.36Nascent polypeptide-associated complex subunit alp... [more]
A0A034WLZ1_BACDO6.860e-874.36Nascent polypeptide-associated complex subunit alp... [more]
A0A7K3Q1K7_STRDI8.440e-853.66HYPK_UBA domain-containing protein n=3 Tax=Strepto... [more]
Q6XIT5_DROYA1.290e-766.67Similar to Drosophila melanogaster Nacalpha (Fragm... [more]
A0A6S8E684_9STRA1.330e-764.10Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
UPI00053F9FEB1.410e-769.23nascent polypeptide-associated complex subunit alp... [more]
A0A8H7PFU4_MORIS2.320e-769.23Nascent polypeptide-associated complex subunit alp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119978contigM-pyrifera_M_contig119978:153..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.5383856-CDS-M-pyrifera_M_contig119978:152..3081622815719.5383856-CDS-M-pyrifera_M_contig119978:152..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119978 153..308 -
1692277537.2144501-CDS-M-pyrifera_M_contig119978:152..3081692277537.2144501-CDS-M-pyrifera_M_contig119978:152..308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119978 153..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119978.4121.1prot_M-pyrifera_M_contig119978.4121.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119978 153..308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119978.4121.1

>prot_M-pyrifera_M_contig119978.4121.1 ID=prot_M-pyrifera_M_contig119978.4121.1|Name=mRNA_M-pyrifera_M_contig119978.4121.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
EAPAADSQASAESGVTEKDIELVVTQAKCTREKAIEVLKKTNGDIVNAIM
VS
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mRNA from alignment at M-pyrifera_M_contig119978:153..308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119978.4121.1 ID=mRNA_M-pyrifera_M_contig119978.4121.1|Name=mRNA_M-pyrifera_M_contig119978.4121.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig119978:153..308- (Macrocystis pyrifera P11B4 male)
GAGGCCCCTGCTGCGGACAGCCAGGCTTCCGCGGAGAGCGGAGTTACGGA GAAGGACATCGAGCTCGTGGTCACTCAGGCCAAGTGCACGAGGGAGAAGG CCATCGAGGTCCTCAAGAAGACCAACGGAGACATTGTCAACGCAATTATG GTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119978:153..308-

>mRNA_M-pyrifera_M_contig119978.4121.1 ID=mRNA_M-pyrifera_M_contig119978.4121.1|Name=mRNA_M-pyrifera_M_contig119978.4121.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig119978:153..308- (Macrocystis pyrifera P11B4 male)
GAGGCCCCTGCTGCGGACAGCCAGGCTTCCGCGGAGAGCGGAGTTACGGA
GAAGGACATCGAGCTCGTGGTCACTCAGGCCAAGTGCACGAGGGAGAAGG
CCATCGAGGTCCTCAAGAAGACCAACGGAGACATTGTCAACGCAATTATG
GTGAGTGAGGCCCCTGCTGCGGACAGCCAGGCTTCCGCGGAGAGCGGAGT
TACGGAGAAGGACATCGAGCTCGTGGTCACTCAGGCCAAGTGCACGAGGG
AGAAGGCCATCGAGGTCCTCAAGAAGACCAACGGAGACATTGTCAACGCA
ATTATGGTGAGT
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