mRNA_M-pyrifera_M_contig119977.4120.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A3M8G140_9BACT (Transcription termination factor Rho n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G140_9BACT) HSP 1 Score: 301 bits (772), Expect = 1.530e-99 Identity = 155/174 (89.08%), Postives = 164/174 (94.25%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
WI +G P T MRV+DLVAPIGKGQRALIVAPPRTGKTVLLKQIAN+LS +H DIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSH+RI EM LGYAKRKAEMG+DA+LLIDS+TRLGRAYNA+QTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 137 WIRLGELPDDTEMRVIDLVAPIGKGQRALIVAPPRTGKTVLLKQIANSLSANHPDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHIRITEMALGYAKRKAEMGQDAILLIDSLTRLGRAYNAIQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 310
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A3D1GC52_9BACT (Transcription termination factor Rho n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GC52_9BACT) HSP 1 Score: 301 bits (772), Expect = 1.630e-99 Identity = 155/174 (89.08%), Postives = 165/174 (94.83%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
W+ +G NP MRV+DLVAPIGKGQRALIVAPPRTGKTVLLKQIAN++S +H DIHLSVLLVDERPEEVTDF+RSTDAEVFASSNDKKTQSHVRI EMTLGYAKRKAEMGEDAVLLIDS+TRLGRAYNA+Q+NSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 139 WMRMGDNPEDIEMRVIDLVAPIGKGQRALIVAPPRTGKTVLLKQIANSISQNHPDIHLSVLLVDERPEEVTDFMRSTDAEVFASSNDKKTQSHVRITEMTLGYAKRKAEMGEDAVLLIDSLTRLGRAYNAIQSNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 312
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A2E6N2V2_9BACT (Transcription termination factor Rho n=2 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N2V2_9BACT) HSP 1 Score: 290 bits (742), Expect = 5.990e-95 Identity = 146/174 (83.91%), Postives = 163/174 (93.68%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
WI +G T MRV+DLVAPIGKGQRALIVAPPRTGKTVLLKQIA++++ HH DIHLS+LLVDERPEEVTDFIRS++AE+FASSND+KTQSH+RI EMTLGYAKRKAEMG+DAV+LIDS+TRLGRAYNA+Q+NSGRTLSGGLDIRALEIPKKIFGSARKIE GGSLTIIATCL
Sbjct: 141 WIRLGDRAQDTEMRVIDLVAPIGKGQRALIVAPPRTGKTVLLKQIADSIAHHHPDIHLSILLVDERPEEVTDFIRSSNAEIFASSNDRKTQSHIRITEMTLGYAKRKAEMGQDAVILIDSLTRLGRAYNAIQSNSGRTLSGGLDIRALEIPKKIFGSARKIESGGSLTIIATCL 314
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A356WZ78_9BACT (Transcription termination factor Rho (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356WZ78_9BACT) HSP 1 Score: 281 bits (719), Expect = 1.150e-93 Identity = 143/174 (82.18%), Postives = 159/174 (91.38%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
WI +G P MRV+DLV+PIGKGQRALIVAPPRTGKTVLLK+IA +L+ ++ DIH+SVLLVDERPEEVTDFIR+T+AEVFASSNDK T SH+RI EM LGYAKRKAEMGED+VLLIDS+TRLGRAYNA+Q+NSGRTLSGGLDIRALEIPKKIFGSARK EGGGSLTIIATCL
Sbjct: 55 WIKLGHQPDDVEMRVIDLVSPIGKGQRALIVAPPRTGKTVLLKKIAKSLNDNYDDIHVSVLLVDERPEEVTDFIRTTNAEVFASSNDKNTDSHIRITEMALGYAKRKAEMGEDSVLLIDSLTRLGRAYNAIQSNSGRTLSGGLDIRALEIPKKIFGSARKFEGGGSLTIIATCL 228
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A350PGK9_9BACT (Transcription termination factor Rho n=8 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A350PGK9_9BACT) HSP 1 Score: 286 bits (731), Expect = 2.300e-93 Identity = 148/174 (85.06%), Postives = 159/174 (91.38%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
WI +G MRV+DLVAPIGKGQRALIVAPPRTGKTV+LKQIA +++ +H DI LSVLLVDERPEEVTDFIRSTDAEVFASSND KTQSH+RI EM LGYAKRKAEMGED+VLLIDS+TRLGRAYNA+QTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 135 WIKLGEPSENIEMRVIDLVAPIGKGQRALIVAPPRTGKTVMLKQIAKSITENHPDIPLSVLLVDERPEEVTDFIRSTDAEVFASSNDNKTQSHIRITEMALGYAKRKAEMGEDSVLLIDSLTRLGRAYNAIQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 308
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A2D8CI85_9BACT (Transcription termination factor Rho n=8 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CI85_9BACT) HSP 1 Score: 282 bits (722), Expect = 5.130e-92 Identity = 148/175 (84.57%), Postives = 160/175 (91.43%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKD-IHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
WI +G N MRVVDLVAPIGKGQR+LIVAPPRTGKTVLLK+IA +L+ +H D IH+SVLLVDERPEEVTDFIRST AEVFASSNDK TQSH+RI EM LGYAKRKAEMGED+VLLIDS+TRLGRAYNA+Q+NSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 133 WIKLGFNADDVEMRVVDLVAPIGKGQRSLIVAPPRTGKTVLLKKIAKSLNDNHSDDIHVSVLLVDERPEEVTDFIRSTQAEVFASSNDKNTQSHIRITEMALGYAKRKAEMGEDSVLLIDSITRLGRAYNAVQSNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 307
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A316TPG3_9BACT (Transcription termination factor Rho n=1 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316TPG3_9BACT) HSP 1 Score: 276 bits (705), Expect = 2.210e-89 Identity = 142/174 (81.61%), Postives = 156/174 (89.66%), Query Frame = 1
Query: 1 WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
+I +G NP +RV+DLVAPIGKGQRALIVAPPRTGKTVLLK+IA +L+ +H +IH +LLVDERPEEVTDF+RST+AEVFASSNDK T+SHVRI EM LGY KRKAE GE AVLLIDS+TRLGRAYNA QTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 139 YIQLGHNPDDIELRVIDLVAPIGKGQRALIVAPPRTGKTVLLKKIAKSLTDNHPNIHTGILLVDERPEEVTDFLRSTNAEVFASSNDKPTESHVRISEMALGYVKRKAEFGEHAVLLIDSLTRLGRAYNAAQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 312
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A6M1SSL6_9BACT (Transcription termination factor Rho n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SSL6_9BACT) HSP 1 Score: 273 bits (698), Expect = 1.820e-88 Identity = 138/162 (85.19%), Postives = 150/162 (92.59%), Query Frame = 1
Query: 37 MRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
MRV+DLVAPIGKGQRALIVAPPRTGKTVLLK++A ++ H+ DIH SVLLVDERPEEVTDF+R+T AEVFASSNDK T SH+R+ EM LGY KRKAEMGEDAVLLIDS+TRLGRAYNA Q+NSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 140 MRVIDLVAPIGKGQRALIVAPPRTGKTVLLKKMAESVCEHYPDIHTSVLLVDERPEEVTDFLRTTKAEVFASSNDKPTTSHLRVTEMALGYVKRKAEMGEDAVLLIDSLTRLGRAYNAAQSNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 301
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A352SK74_9BACT (Transcription termination factor Rho n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A352SK74_9BACT) HSP 1 Score: 272 bits (696), Expect = 4.910e-88 Identity = 136/168 (80.95%), Postives = 150/168 (89.29%), Query Frame = 1
Query: 19 NPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
NP +R +DL+APIGKGQRALIVAPPRTGKTVLLKQIA AL+ HH ++H S+LLVDERPEEVTDF+R+T AEVFASSND+ TQSHVRI EM LGYAKRKAE G+DAVLLIDS+TRLGRAYNA QT SGRTLSGGLDIRALE+PK+IFGSAR EGGGSLTIIATCL
Sbjct: 147 NPEEVELRALDLIAPIGKGQRALIVAPPRTGKTVLLKQIAGALTEHHPEVHTSILLVDERPEEVTDFLRTTSAEVFASSNDRSTQSHVRIAEMALGYAKRKAESGQDAVLLIDSLTRLGRAYNAAQTGSGRTLSGGLDIRALEVPKRIFGSARAFEGGGSLTIIATCL 314
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Match: A0A2N0VGY7_9BACT (Transcription termination factor Rho n=2 Tax=Rhodohalobacter TaxID=1974209 RepID=A0A2N0VGY7_9BACT) HSP 1 Score: 269 bits (688), Expect = 6.650e-87 Identity = 135/162 (83.33%), Postives = 151/162 (93.21%), Query Frame = 1
Query: 37 MRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSTHHKDIHLSVLLVDERPEEVTDFIRSTDAEVFASSNDKKTQSHVRICEMTLGYAKRKAEMGEDAVLLIDSMTRLGRAYNAMQTNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 522
+RV+DLV+PIG+GQRALIVAPPRTGKTVLLK+IA AL+ HH DI+ +LLVDERPEEVTDF+RST+A+VFASSNDK T+SHVRI EM LG+ KRKAE GE AVLLIDS+TRLGRAYNA+Q+NSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL
Sbjct: 144 LRVIDLVSPIGRGQRALIVAPPRTGKTVLLKKIARALTEHHPDIYTGILLVDERPEEVTDFLRSTNADVFASSNDKPTESHVRISEMALGHVKRKAEAGEHAVLLIDSLTRLGRAYNAVQSNSGRTLSGGLDIRALEIPKKIFGSARKIEGGGSLTIIATCL 305 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119977.4120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119977.4120.1 >prot_M-pyrifera_M_contig119977.4120.1 ID=prot_M-pyrifera_M_contig119977.4120.1|Name=mRNA_M-pyrifera_M_contig119977.4120.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp WIGVGGNPGGTGMRVVDLVAPIGKGQRALIVAPPRTGKTVLLKQIANALSback to top mRNA from alignment at M-pyrifera_M_contig119977:1..522- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119977.4120.1 ID=mRNA_M-pyrifera_M_contig119977.4120.1|Name=mRNA_M-pyrifera_M_contig119977.4120.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig119977:1..522- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119977:1..522- >mRNA_M-pyrifera_M_contig119977.4120.1 ID=mRNA_M-pyrifera_M_contig119977.4120.1|Name=mRNA_M-pyrifera_M_contig119977.4120.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig119977:1..522- (Macrocystis pyrifera P11B4 male)back to top |