mRNA_M-pyrifera_M_contig119975.4119.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119975.4119.1
Unique NamemRNA_M-pyrifera_M_contig119975.4119.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119975.4119.1 vs. uniprot
Match: A0A484EGF9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGF9_BRELC)

HSP 1 Score: 53.1 bits (126), Expect = 8.740e-6
Identity = 30/106 (28.30%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:   34 GYEDGDTALSVGSLEQVPPGMVDTAVDACAWAKANIGELLHAVCGAERVYASVDALLSGRRMAAVRDYWSFWNNCGEVGKAGKLLLVPAAAWP-----VFVDDHVD 336
            G+E   TAL++G+L +VP      + +      A +   +  + G + ++ +++ +L G  + A+RDY+ +W+   E G+ GKLLL+   A       +F DDH++
Sbjct:  247 GFEANGTALALGTLLKVP----FPSNEGADRFYAALSPQIQVIRGFQSIHETLNNMLQGATILALRDYYEWWSAHAEEGQYGKLLLIEEMAQKEGDVTIFFDDHIE 348
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119975.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A484EGF9_BRELC8.740e-628.30Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119975contigM-pyrifera_M_contig119975:18..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3e-11
Seed eggNOG ortholog157072.XP_008868246.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28IWV@1,2QR8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119975.4119.1prot_M-pyrifera_M_contig119975.4119.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119975 18..483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.4396992-CDS-M-pyrifera_M_contig119975:17..1711622815719.4396992-CDS-M-pyrifera_M_contig119975:17..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 18..171 +
1692277537.1734438-CDS-M-pyrifera_M_contig119975:17..1711692277537.1734438-CDS-M-pyrifera_M_contig119975:17..171Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 18..171 +
1622815719.451163-CDS-M-pyrifera_M_contig119975:241..3901622815719.451163-CDS-M-pyrifera_M_contig119975:241..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 242..390 +
1692277537.1851113-CDS-M-pyrifera_M_contig119975:241..3901692277537.1851113-CDS-M-pyrifera_M_contig119975:241..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 242..390 +
1622815719.4631517-CDS-M-pyrifera_M_contig119975:450..4831622815719.4631517-CDS-M-pyrifera_M_contig119975:450..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 451..483 +
1692277537.1937416-CDS-M-pyrifera_M_contig119975:450..4831692277537.1937416-CDS-M-pyrifera_M_contig119975:450..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119975 451..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119975.4119.1

>prot_M-pyrifera_M_contig119975.4119.1 ID=prot_M-pyrifera_M_contig119975.4119.1|Name=mRNA_M-pyrifera_M_contig119975.4119.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
PFLLTHPPTAGGYEDGDTALSVGSLEQVPPGMVDTAVDACAWAKANIGEL
LHAVCGAERVYASVDALLSGRRMAAVRDYWSFWNNCGEVGKAGKLLLVPA
AAWPVFVDDHVD
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mRNA from alignment at M-pyrifera_M_contig119975:18..483+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119975.4119.1 ID=mRNA_M-pyrifera_M_contig119975.4119.1|Name=mRNA_M-pyrifera_M_contig119975.4119.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=466bp|location=Sequence derived from alignment at M-pyrifera_M_contig119975:18..483+ (Macrocystis pyrifera P11B4 male)
CCATTTCTGCTCACCCACCCACCGACGGCAGGCGGGTACGAGGATGGAGA
CACTGCGCTGTCGGTGGGCAGCCTGGAGCAGGTGCCCCCAGGGATGGTGG
ACACGGCGGTGGACGCGTGCGCGTGGGCCAAGGCCAACATTGGTGAGCTG
CTGCGTGCCTCCGCTGCGTTCGCAGACCCCTCTCACCCCCCCCGCTTCCT
CACGCCACCCAGACGGCGTGGAAGATGCGGTGTGTGGAGCGGAGCGGGTG
TACGCGTCGGTGGATGCGCTGCTCTCTGGCCGGCGCATGGCAGCAGTGCG
CGACTACTGGTCGTTCTGGAACAACTGCGGCGAGGTGGGCAAGGCAGGGA
AGCTGCTGCTCGTGCCCGCTGCTGTCCGCGCAGCGGTGGCTGCCTCTGCG
GAATCCGGTGGAGCTGCCGACACTGGCGATCAGGCGTGGCCAGTGTTCGT
GGACGACCACGTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119975:18..483+

>mRNA_M-pyrifera_M_contig119975.4119.1 ID=mRNA_M-pyrifera_M_contig119975.4119.1|Name=mRNA_M-pyrifera_M_contig119975.4119.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig119975:18..483+ (Macrocystis pyrifera P11B4 male)
CCATTTCTGCTCACCCACCCACCGACGGCAGGCGGGTACGAGGATGGAGA
CACTGCGCTGTCGGTGGGCAGCCTGGAGCAGGTGCCCCCAGGGATGGTGG
ACACGGCGGTGGACGCGTGCGCGTGGGCCAAGGCCAACATTGGTGAGCTG
CTGCCCATTTCTGCTCACCCACCCACCGACGGCAGGCGGGTACGAGGATG
GAGACACTGCGCTGTCGGTGGGCAGCCTGGAGCAGGTGCCCCCAGGGATG
GTGGACACGGCGGTGGACGCGTGCGCGTGGGCCAAGGCCAACATTGGTGA
GCTGCTGCATGCGGTGTGTGGAGCGGAGCGGGTGTACGCGTCGGTGGATG
CGCTGCTCTCTGGCCGGCGCATGGCAGCAGTGCGCGACTACTGGTCGTTC
TGGAACAACTGCGGCGAGGTGGGCAAGGCAGGGAAGCTGCTGCTCGTGCC
CGCTGCTATGCGGTGTGTGGAGCGGAGCGGGTGTACGCGTCGGTGGATGC
GCTGCTCTCTGGCCGGCGCATGGCAGCAGTGCGCGACTACTGGTCGTTCT
GGAACAACTGCGGCGAGGTGGGCAAGGCAGGGAAGCTGCTGCTCGTGCCC
GCTGCTGCGTGGCCAGTGTTCGTGGACGACCACGTGGACGCGTGGCCAGT
GTTCGTGGACGACCACGTGGAC
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