mRNA_M-pyrifera_M_contig119888.4110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119888.4110.1
Unique NamemRNA_M-pyrifera_M_contig119888.4110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119888.4110.1 vs. uniprot
Match: A0A2E7KHR3_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHR3_9PLAN)

HSP 1 Score: 295 bits (754), Expect = 3.320e-93
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 
Query:    1 LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMPQGGVSQAGYQYSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGYQGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQRQY 459
            LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMPQGGVSQAGYQYSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGYQGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQRQY
Sbjct:  613 LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMPQGGVSQAGYQYSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGYQGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQRQY 765
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BLAST of mRNA_M-pyrifera_M_contig119888.4110.1 vs. uniprot
Match: A0A518A1Q7_9PLAN (Tetratricopeptide repeat protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A1Q7_9PLAN)

HSP 1 Score: 219 bits (559), Expect = 8.660e-65
Identity = 117/153 (76.47%), Postives = 126/153 (82.35%), Query Frame = 1 
Query:    1 LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMPQGGVSQAGYQYSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGYQGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQRQY 459
            LMS+QMG+ GVIPASAQVPFQNAYG    N LQPQ+GQGM  GGV QAGY+YSGQ  GQGNVYHASMPQRFPAQEQPMSSALPQSAMFS NP  APANVR+QNA+GT    + GYQ   N + N N+QSASPFQWGSQP NS YQFSDPQRQY
Sbjct:  598 LMSAQMGTSGVIPASAQVPFQNAYGAGNQNSLQPQLGQGMSIGGVRQAGYEYSGQSVGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSTNPAVAPANVRYQNAAGTGGITQAGYQ---NAAPNPNQQSASPFQWGSQPANSNYQFSDPQRQY 747
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BLAST of mRNA_M-pyrifera_M_contig119888.4110.1 vs. uniprot
Match: A0A517W282_9PLAN (Tetratricopeptide repeat protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W282_9PLAN)

HSP 1 Score: 86.3 bits (212), Expect = 9.640e-17
Identity = 70/170 (41.18%), Postives = 88/170 (51.76%), Query Frame = 1 
Query:    1 LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMP------QGGVSQAGYQYSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGY-----------QGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQRQY 459
            LM SQ+ +   IP+SAQVP QN Y T G +  Q  +G G P        G+SQAGY++S Q   Q N +++    R   +   + S++PQSAMFSNNP  APANVR  N        R GY           Q  LN  Q  N+Q +SP QWG+Q   S Y F   Q QY
Sbjct:  546 LMPSQIPTSNPIPSSAQVPQQNIYQTGGQSIRQ--VGTGQPTYQQQTSRGISQAGYEFSNQQTSQMNGFNSDTQNRNLGRIHEIPSSVPQSAMFSNNPAFAPANVRSHNLEPNQQIQRNGYGRGNRPTAVKRQPVLN-HQGPNQQISSPVQWGAQQQASPYHFPAQQSQY 712
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BLAST of mRNA_M-pyrifera_M_contig119888.4110.1 vs. uniprot
Match: A0A2E2C3M8_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C3M8_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 7.340e-15
Identity = 73/173 (42.20%), Postives = 86/173 (49.71%), Query Frame = 1 
Query:    1 LMSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQ----PQMGQGMPQ-GGVSQAGYQYSGQPAGQGNVYHASMPQR------FPAQEQPMSSALPQSAMFSNNPVAAPANVRFQNASGTAADLRTGYQGSLNGSQ---------NLNEQSASPFQWGSQPTNSQYQFSDPQRQY 459
            LMS Q   G +IPASAQVP QNA+   G N  Q    P   Q  PQ GGV QAGY+YS QP  Q N Y     Q       FP     + S LPQSAM+SNNP  APANVR   +       +  YQ     +          N N+ + S FQWG+QP     Q+S+ Q QY
Sbjct:  569 LMSPQTQVGTLIPASAQVPGQNAFQPGGQNIRQVQYDPAAYQQQPQAGGVRQAGYEYSNQPHQQPNGYQGQGMQPVQNAGGFPR----LPSELPQSAMYSNNPDFAPANVRTAGSELQQGKQQGVYQSGQQAADQNRQLLMNPNSNQPAPSRFQWGAQPVPVPGQYSNAQGQY 737
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119888.4110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KHR3_9PLAN3.320e-93100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A1Q7_9PLAN8.660e-6576.47Tetratricopeptide repeat protein n=4 Tax=Gimesia p... [more]
A0A517W282_9PLAN9.640e-1741.18Tetratricopeptide repeat protein n=4 Tax=Gimesia a... [more]
A0A2E2C3M8_9PLAN7.340e-1542.20Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119888contigM-pyrifera_M_contig119888:3..464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size459
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.016035-UTR-M-pyrifera_M_contig119888:2..51622815719.016035-UTR-M-pyrifera_M_contig119888:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119888 3..5 +
1692277536.9606328-UTR-M-pyrifera_M_contig119888:2..51692277536.9606328-UTR-M-pyrifera_M_contig119888:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119888 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.028153-CDS-M-pyrifera_M_contig119888:5..4641622815719.028153-CDS-M-pyrifera_M_contig119888:5..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119888 6..464 +
1692277536.9713273-CDS-M-pyrifera_M_contig119888:5..4641692277536.9713273-CDS-M-pyrifera_M_contig119888:5..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119888 6..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119888.4110.1prot_M-pyrifera_M_contig119888.4110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119888 6..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119888.4110.1

>prot_M-pyrifera_M_contig119888.4110.1 ID=prot_M-pyrifera_M_contig119888.4110.1|Name=mRNA_M-pyrifera_M_contig119888.4110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MSSQMGSGGVIPASAQVPFQNAYGTNGPNGLQPQMGQGMPQGGVSQAGYQ
YSGQPAGQGNVYHASMPQRFPAQEQPMSSALPQSAMFSNNPVAAPANVRF
QNASGTAADLRTGYQGSLNGSQNLNEQSASPFQWGSQPTNSQYQFSDPQR
QY*
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mRNA from alignment at M-pyrifera_M_contig119888:3..464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119888.4110.1 ID=mRNA_M-pyrifera_M_contig119888.4110.1|Name=mRNA_M-pyrifera_M_contig119888.4110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig119888:3..464+ (Macrocystis pyrifera P11B4 male)
CTGATGAGTTCTCAGATGGGATCCGGAGGCGTCATTCCTGCTTCAGCCCA
GGTTCCTTTCCAGAATGCCTACGGAACGAATGGCCCGAACGGACTCCAGC
CACAAATGGGGCAGGGCATGCCACAGGGGGGTGTCAGTCAGGCCGGTTAT
CAATATTCGGGTCAGCCTGCCGGGCAGGGCAATGTCTATCATGCTTCGAT
GCCGCAACGTTTTCCTGCACAGGAACAACCGATGTCCTCGGCTCTGCCAC
AATCGGCGATGTTCTCCAACAACCCGGTGGCGGCTCCGGCAAACGTGCGT
TTCCAGAACGCATCAGGAACGGCCGCTGATCTGCGGACTGGCTATCAGGG
GAGCCTGAATGGATCTCAAAATCTCAATGAGCAGTCGGCTTCGCCCTTCC
AGTGGGGAAGTCAGCCGACAAACTCTCAATATCAGTTCTCAGATCCACAG
AGACAATATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119888:3..464+

>mRNA_M-pyrifera_M_contig119888.4110.1 ID=mRNA_M-pyrifera_M_contig119888.4110.1|Name=mRNA_M-pyrifera_M_contig119888.4110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig119888:3..464+ (Macrocystis pyrifera P11B4 male)
ATGAGTTCTCAGATGGGATCCGGAGGCGTCATTCCTGCTTCAGCCCAGGT
TCCTTTCCAGAATGCCTACGGAACGAATGGCCCGAACGGACTCCAGCCAC
AAATGGGGCAGGGCATGCCACAGGGGGGTGTCAGTCAGGCCGGTTATCAA
TATTCGGGTCAGCCTGCCGGGCAGGGCAATGTCTATCATGCTTCGATGCC
GCAACGTTTTCCTGCACAGGAACAACCGATGTCCTCGGCTCTGCCACAAT
CGGCGATGTTCTCCAACAACCCGGTGGCGGCTCCGGCAAACGTGCGTTTC
CAGAACGCATCAGGAACGGCCGCTGATCTGCGGACTGGCTATCAGGGGAG
CCTGAATGGATCTCAAAATCTCAATGAGCAGTCGGCTTCGCCCTTCCAGT
GGGGAAGTCAGCCGACAAACTCTCAATATCAGTTCTCAGATCCACAGAGA
CAATATTAAATGAGTTCTCAGATGGGATCCGGAGGCGTCATTCCTGCTTC
AGCCCAGGTTCCTTTCCAGAATGCCTACGGAACGAATGGCCCGAACGGAC
TCCAGCCACAAATGGGGCAGGGCATGCCACAGGGGGGTGTCAGTCAGGCC
GGTTATCAATATTCGGGTCAGCCTGCCGGGCAGGGCAATGTCTATCATGC
TTCGATGCCGCAACGTTTTCCTGCACAGGAACAACCGATGTCCTCGGCTC
TGCCACAATCGGCGATGTTCTCCAACAACCCGGTGGCGGCTCCGGCAAAC
GTGCGTTTCCAGAACGCATCAGGAACGGCCGCTGATCTGCGGACTGGCTA
TCAGGGGAGCCTGAATGGATCTCAAAATCTCAATGAGCAGTCGGCTTCGC
CCTTCCAGTGGGGAAGTCAGCCGACAAACTCTCAATATCAGTTCTCAGAT
CCACAGAGACAATATTAA
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