mRNA_M-pyrifera_M_contig119884.4109.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119884.4109.1
Unique NamemRNA_M-pyrifera_M_contig119884.4109.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A7V3T6X9_9BACT (Malectin domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V3T6X9_9BACT)

HSP 1 Score: 122 bits (305), Expect = 6.720e-30
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP  +RA F  LLP+   +S +  ++GR+PVDPAFA + Q      IPW+EDDP LTAP+LW+ R     A A   G  G++GIHWRTR   P V A+ Q A
Sbjct:  460 PFRVATCGWVLGPAQDRAMFDALLPKDIALSCINRNVGRTPVDPAFARI-QGRSKWAIPWLEDDPALTAPQLWVGRMRRDAADAHAYGCDGLMGIHWRTRIVGPAVSALAQAA 571          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A832MDF1_9BACT (Malectin domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832MDF1_9BACT)

HSP 1 Score: 121 bits (304), Expect = 9.150e-30
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP ++RA F   LP+++ +S +  ++G+SPVDPAFA V ++     IPW+EDDP LT+P+LW+ R     A A+  G  G++GIHWRTR  +P V A+ Q A
Sbjct:  413 PFQLATCGWVLGPPEDRALFDKALPKEFALSCINREVGKSPVDPAFALV-RNRSKWAIPWLEDDPALTSPQLWVGRMRRDAADARRYGCDGLMGIHWRTRVLAPNVLALAQAA 524          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A847YBY9_9BACT (Malectin domain-containing protein n=1 Tax=Thermogutta sp. TaxID=1962930 RepID=A0A847YBY9_9BACT)

HSP 1 Score: 117 bits (292), Expect = 3.800e-28
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP+ +RA F  +LP+ W +S +   +G  PV+P FA + +      IPWMEDDP L +P+LW+ R     A A   G  G++GIHWRTR   P V A+ Q A
Sbjct:  425 PFGLATCGWVLGPVQDRALFDKVLPKDWAVSCINRQVGHEPVEPGFAEI-EGRPKWAIPWMEDDPALNSPQLWVGRMRKDAADALAYGCTGLMGIHWRTRQLGPNVSALAQAA 536          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A1F5ABS6_9BACT (Malectin domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_16_63_14 TaxID=1797272 RepID=A0A1F5ABS6_9BACT)

HSP 1 Score: 114 bits (284), Expect = 4.560e-27
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF++A CGWVLGP  NR  F  +LP+   MS +  ++G++PVDP FA +A       IPWMEDDP LT+P+LW  R     A A   G  G+LGIHWRTR  S  V ++ + A
Sbjct:  419 PFSLATCGWVLGPPSNRTLFDQVLPKDVAMSCINREVGKAPVDPGFARIAGRSL-WAIPWMEDDPALTSPQLWAGRMRRDAADALRYGCDGLLGIHWRTRVLSANVLSLARAA 530          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A524HWP7_9BACT (Malectin domain-containing protein (Fragment) n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A524HWP7_9BACT)

HSP 1 Score: 113 bits (283), Expect = 5.430e-27
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF++A CGWVLGP  +R  F  +LP+   MS +  ++G++PVDP F+ ++       IPWMEDDP LT+P+LW  R     A A   G  G+LGIHWRTR  SP V A+ + A
Sbjct:  429 PFSLATCGWVLGPPSDRTLFDRVLPKDVAMSCINREVGKAPVDPGFSRISGRSL-WAIPWMEDDPALTSPQLWAGRMRRDAADALRYGCDGLLGIHWRTRVLSPNVLALARAA 540          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A7C3DIK4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3DIK4_9BACT)

HSP 1 Score: 113 bits (283), Expect = 6.220e-27
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP  +RA F  +LP+   +S +  ++GR+PVD AFATV Q      IPW+EDDP LT+ +LW  R     A A+  G  G+LGIHWRTR+ +P V A+ + A
Sbjct:  419 PFKLATCGWVLGPQQDRALFDKVLPKDVAVSCINREVGRTPVDRAFATV-QGRGKWAIPWLEDDPALTSIQLWAGRMRRDAADARRYGCDGLLGIHWRTRSLAPNVGALARAA 530          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A832HYE0_9BACT (Malectin domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A832HYE0_9BACT)

HSP 1 Score: 113 bits (282), Expect = 8.500e-27
Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP  +RA F   LP++  +S +   +G++PV+  FA + Q      IPW+EDDPGLTAP+LW  R     A A   G  G++GIHWRTR   P V A+ Q A
Sbjct:  451 PFTLATCGWVLGPPQDRALFDKALPKEMPVSCINRQVGKTPVEKGFAKI-QGRGKWAIPWLEDDPGLTAPQLWAARMRRDAADALRYGCDGLMGIHWRTRVLGPAVLALAQAA 562          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A7X7U1T2_9BACT (Malectin domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7U1T2_9BACT)

HSP 1 Score: 111 bits (278), Expect = 2.800e-26
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP  +RA F  LLP++  MS +  ++G +PV+  FA + Q      IPW+EDDPGLT P+LW+ R     A A   G  G+LGIHWRTR   P V A+ + A
Sbjct:  416 PFVLATCGWVLGPPKDRALFDNLLPKEMPMSCINRNVGFAPVEAGFARI-QGRPRWAIPWLEDDPGLTIPQLWVGRMRRDAADALAYGCSGLLGIHWRTRILGPNVSALAKAA 527          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A1F5AV67_9BACT (Malectin domain-containing protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_13_64_14 TaxID=1797271 RepID=A0A1F5AV67_9BACT)

HSP 1 Score: 111 bits (277), Expect = 4.010e-26
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF++A CGWVLGP  NR  F  +LP+   MS +  ++G++PVDP F+ ++       IPWMEDDP LT+P+LW  R     A A   G  G+LGIHWRTR  S  V ++ + A
Sbjct:  409 PFSLATCGWVLGPPSNRTLFDQVLPKDVAMSCINREVGKAPVDPGFSRISGRSL-WAIPWMEDDPALTSPQLWAGRMRRDAADALRYGCDGLLGIHWRTRILSANVLSLARAA 520          
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Match: A0A7C4LR91_9BACT (Malectin domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4LR91_9BACT)

HSP 1 Score: 110 bits (276), Expect = 5.500e-26
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVAQSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTRATSPQVRAMLQRA 339
            PF +A CGWVLGP  +RA F   LP+   +S +  ++G++PVD  FA V Q      IPW+EDDP LTAP+LW  R       A   G  G++GIHWRTR+  P + A+ Q A
Sbjct:  520 PFGLATCGWVLGPQQDRALFDTFLPKDVAVSCINREVGKTPVDKGFARV-QGRGKWAIPWLEDDPALTAPQLWASRMRRDARDALAYGCDGLMGIHWRTRSVGPMLGALAQAA 631          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119884.4109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V3T6X9_9BACT6.720e-3050.44Malectin domain-containing protein n=1 Tax=Verruco... [more]
A0A832MDF1_9BACT9.150e-3048.67Malectin domain-containing protein n=1 Tax=Verruco... [more]
A0A847YBY9_9BACT3.800e-2846.02Malectin domain-containing protein n=1 Tax=Thermog... [more]
A0A1F5ABS6_9BACT4.560e-2747.79Malectin domain-containing protein n=1 Tax=Candida... [more]
A0A524HWP7_9BACT5.430e-2746.90Malectin domain-containing protein (Fragment) n=1 ... [more]
A0A7C3DIK4_9BACT6.220e-2748.67Uncharacterized protein n=1 Tax=Verrucomicrobia su... [more]
A0A832HYE0_9BACT8.500e-2746.90Malectin domain-containing protein n=1 Tax=Verruco... [more]
A0A7X7U1T2_9BACT2.800e-2647.79Malectin domain-containing protein (Fragment) n=1 ... [more]
A0A1F5AV67_9BACT4.010e-2646.02Malectin domain-containing protein n=1 Tax=Candida... [more]
A0A7C4LR91_9BACT5.500e-2646.02Malectin domain-containing protein n=1 Tax=Verruco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119884contigM-pyrifera_M_contig119884:204..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score91.7
Seed ortholog evalue2.4e-16
Seed eggNOG ortholog452637.Oter_2229
Hectar predicted targeting categoryother localisation
EggNOG free text desc.xyloglucan:xyloglucosyl transferase activity
EggNOG OGsCOG2273@1,COG2273@2
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.9711437-CDS-M-pyrifera_M_contig119884:203..5421622815718.9711437-CDS-M-pyrifera_M_contig119884:203..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119884 204..542 -
1692277536.9490414-CDS-M-pyrifera_M_contig119884:203..5421692277536.9490414-CDS-M-pyrifera_M_contig119884:203..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119884 204..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119884.4109.1prot_M-pyrifera_M_contig119884.4109.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119884 204..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119884.4109.1

>prot_M-pyrifera_M_contig119884.4109.1 ID=prot_M-pyrifera_M_contig119884.4109.1|Name=mRNA_M-pyrifera_M_contig119884.4109.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
PFAIAACGWVLGPIDNRAFFSPLLPQQWWMSSLEGDLGRSPVDPAFATVA
QSHFSMVIPWMEDDPGLTAPELWLQRSLAQVAQAQEEGVKGVLGIHWRTR
ATSPQVRAMLQRA
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mRNA from alignment at M-pyrifera_M_contig119884:204..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119884.4109.1 ID=mRNA_M-pyrifera_M_contig119884.4109.1|Name=mRNA_M-pyrifera_M_contig119884.4109.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig119884:204..542- (Macrocystis pyrifera P11B4 male)
CCGTTTGCCATTGCAGCCTGTGGGTGGGTGCTTGGACCCATCGACAATCG AGCCTTCTTCTCCCCACTCCTGCCCCAGCAGTGGTGGATGAGCTCCCTCG AAGGCGACCTGGGCCGCTCTCCAGTGGACCCGGCGTTTGCTACCGTGGCA CAGAGCCACTTCTCGATGGTCATTCCGTGGATGGAAGATGACCCGGGGTT GACCGCGCCGGAGCTGTGGCTGCAGCGGTCCCTCGCTCAGGTAGCTCAAG CACAAGAGGAGGGCGTGAAGGGAGTGCTGGGCATTCACTGGCGCACCAGA GCAACGAGTCCGCAAGTCAGAGCGATGCTCCAACGAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119884:204..542-

>mRNA_M-pyrifera_M_contig119884.4109.1 ID=mRNA_M-pyrifera_M_contig119884.4109.1|Name=mRNA_M-pyrifera_M_contig119884.4109.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig119884:204..542- (Macrocystis pyrifera P11B4 male)
CCGTTTGCCATTGCAGCCTGTGGGTGGGTGCTTGGACCCATCGACAATCG
AGCCTTCTTCTCCCCACTCCTGCCCCAGCAGTGGTGGATGAGCTCCCTCG
AAGGCGACCTGGGCCGCTCTCCAGTGGACCCGGCGTTTGCTACCGTGGCA
CAGAGCCACTTCTCGATGGTCATTCCGTGGATGGAAGATGACCCGGGGTT
GACCGCGCCGGAGCTGTGGCTGCAGCGGTCCCTCGCTCAGGTAGCTCAAG
CACAAGAGGAGGGCGTGAAGGGAGTGCTGGGCATTCACTGGCGCACCAGA
GCAACGAGTCCGCAAGTCAGAGCGATGCTCCAACGAGCACCGTTTGCCAT
TGCAGCCTGTGGGTGGGTGCTTGGACCCATCGACAATCGAGCCTTCTTCT
CCCCACTCCTGCCCCAGCAGTGGTGGATGAGCTCCCTCGAAGGCGACCTG
GGCCGCTCTCCAGTGGACCCGGCGTTTGCTACCGTGGCACAGAGCCACTT
CTCGATGGTCATTCCGTGGATGGAAGATGACCCGGGGTTGACCGCGCCGG
AGCTGTGGCTGCAGCGGTCCCTCGCTCAGGTAGCTCAAGCACAAGAGGAG
GGCGTGAAGGGAGTGCTGGGCATTCACTGGCGCACCAGAGCAACGAGTCC
GCAAGTCAGAGCGATGCTCCAACGAGCA
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