mRNA_M-pyrifera_M_contig119880.4108.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119880.4108.1
Unique NamemRNA_M-pyrifera_M_contig119880.4108.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A5A8CT96_CAFRO (Uncharacterized protein n=9 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CT96_CAFRO)

HSP 1 Score: 155 bits (391), Expect = 6.180e-41
Identity = 78/140 (55.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 GCLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNG---ESLGPAWVGISPHGGLMPALTLQSSRIRVNFGQKPFRAP 411
            GCLLTRG+WYFE T+ R G ASQLGWAD++F+GSS  G+GVGDD  SWAYDG+R       +RWH     YGR W  G+V+GFA D+D R ++F+L G      G AW G S  GGL P  TLQ S   VNFGQ  FR P
Sbjct: 5459 GCLLTRGKWYFEVTVQRRGQASQLGWADMAFAGSSMGGQGVGDDRSSWAYDGER------CVRWHDGSLPYGRPWYPGNVIGFAVDMDTREMQFSLGGAFDRPNGVAWSGFSCEGGLTPGFTLQGSTFTVNFGQSVFRHP 5592          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A024GC57_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GC57_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.350e-29
Identity = 65/148 (43.92%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGFR 432
            C+++ GRWY+EA +L      Q+GWAD +F G++D G GVGD  HSWAYDG R        +WH +   +G  W +GDVVG   D D   I FTLNG+    ++G A+  I   GGL P  +  +  R++ N G KPF+ PPP PGF+
Sbjct: 2689 CMVSSGRWYYEA-VLHTNGCIQIGWADTAFCGAADRGDGVGDGPHSWAYDGWRQQ------KWHGQSSPWGSKWNQGDVVGCGVDADSGAIIFTLNGKMRSVNMGVAFRSIDFIGGLYPCASFNRRERLQFNLGSKPFKYPPP-PGFK 2828          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A7R9U6N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6N5_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.690e-29
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    1 GCLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGESLGPAWVGISPHG-------GLMPALTLQSSRIRVNFGQKPFR--APP 414
            G LLT G+WY+E T+L PG A Q+GWADL F GS+  G GVGDD HSW YDG R+   G    WH +   +G+ W+ G V+G A D+D R++ F+ NG    P  +G+   G       GL+P  TL  S +  NFG  PF+  APP
Sbjct:  947 GVLLTHGKWYYEFTVLNPGVA-QIGWADLDFVGSNREGLGVGDDKHSWGYDGARAPRTGL---WHTDGYRFGQQWSAGTVIGCAVDVDFRVMRFSHNGSFDAP--MGVPGPGLNFEFTAGLIPGFTLNPSSVLANFGATPFKYKAPP 1087          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A5D6YUG8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YUG8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.940e-29
Identity = 67/147 (45.58%), Postives = 90/147 (61.22%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGF 429
            CL++RGRWY+EAT+   G   Q+GWAD++FSGS+D G GVGD +HSWAYDG R        +WH +   +G  W +GDVVG A D D   I FTLNG+    ++G A+  I    G+ P  +  +  R++ N G  PF+  PP PGF
Sbjct: 2831 CLVSRGRWYYEATLHSNG-CIQIGWADVAFSGSADRGDGVGDGSHSWAYDGWRQQ------KWHGQSSPWGSKWKQGDVVGCAIDADAGTIIFTLNGKMGSANMGTAFRAIKFARGVYPCASFNRRERLQFNLGGTPFKHSPP-PGF 2969          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: F0WEA1_9STRA (HECT E3 ubiquitin ligase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEA1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.800e-28
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGFR 432
            C+++ GRWY+EA +L      Q+GWAD +F G++D G GVGD  HSWAYDG R        +WH +   +G  W +GDVVG   D D   I FTLNG+    ++G A+  I   GGL P  +  +  R++ N G KPF+  PP PGFR
Sbjct: 2682 CMVSSGRWYYEA-VLHTNGCIQIGWADTAFCGAADRGDGVGDGPHSWAYDGWRQQ------KWHGQSSPWGSKWNQGDVVGCGVDADSGAIIFTLNGKMRSVNMGVAFRAIDFGGGLYPCASFNRRERLQFNLGGKPFKFAPP-PGFR 2821          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A6P8IEF7_ACTTE (NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IEF7_ACTTE)

HSP 1 Score: 115 bits (289), Expect = 9.550e-28
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   13 TRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGD-YGRLWARGDVVGFAADLDRRIIEFTLNGESLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQK--PFRAPPPA 420
            TRGR+Y+E      G   QLGWAD  F   ++ GKG GDDAHSWAYDG R       L+WH    + YG  W+ GDV+G A D+D+R I F+LNG+  G A+  IS  GG+ P ++L +  R+++  G +  PF   PPA
Sbjct:   48 TRGRFYYECKTATAG-YMQLGWADEDFQAIAEQGKGCGDDAHSWAYDGKR------CLKWHENKKEKYGEAWSAGDVIGIAIDIDQRQIMFSLNGKDYGKAFENISISGGIYPCMSLARGERVQIFLGNESDPFNHQPPA 180          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: A0A2R5GYN2_9STRA (Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYN2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 9.720e-28
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    7 LLTRGRWYFEATILRPGDA-SQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE---SLGPAWVGISPHGGLMPALTLQSS-RIRVNFGQKPFRAPPP 417
            +L  G+WY+E  +++ G+  +Q+GWAD +F GS D   G GDD HSWAYDG R        +W+    ++G  W  G +VG AAD+D R++ F+LNG    ++G A+  I   GGL PA+T + + + ++N GQKPF   PP
Sbjct: 2324 MLYSGKWYYEVLLVKTGEGVAQIGWADAAFQGSDDDSTGTGDDEHSWAYDGQRQ------KKWNNGSTNWGSKWHDGFIVGCAADIDGRVLSFSLNGSWSRNMGTAFKNIKITGGLFPAITGERNFKCQINLGQKPFAHAPP 2459          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: G4ZDA2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDA2_PHYSP)

HSP 1 Score: 117 bits (292), Expect = 1.320e-27
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGFR 432
            CL++ GRWY+EA IL      Q+GWAD++F G++D G GVGD AHSWAYDG R        RWH     +G  W +GDVVG   D D   I F+LNG+    ++G A+  I    G+ P  +  +  R++ N G  PF+ PPP PGF+
Sbjct: 2704 CLVSSGRWYYEA-ILHTNGCIQIGWADVAFCGAADRGDGVGDGAHSWAYDGWRQQ------RWHGRSSPWGSKWKQGDVVGCGIDADAGTIIFSLNGKMRSANMGVAFRAIDFARGVYPCASFNRRERLQFNLGGSPFKYPPP-PGFQ 2843          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: M4C5C4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5C4_HYAAE)

HSP 1 Score: 116 bits (291), Expect = 1.770e-27
Identity = 63/148 (42.57%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGFR 432
            CL++ GRWY+EAT+   G   Q+GWAD++F G++D G GVGD AHSWAYDG R        RWH     +G  W +GDV+G   D D   I F+LNG+    ++G A+  +    G+ P  +  +  R++ N G  PF+ PPP PGF+
Sbjct: 1190 CLVSSGRWYYEATLHTNG-CIQIGWADVAFCGAADRGDGVGDGAHSWAYDGWRQQ------RWHGRSSPWGSKWKQGDVIGCGIDADAGTIIFSLNGKMRSANMGVAFRAVDFARGVYPCASFNRRERLQFNLGGSPFKFPPP-PGFQ 1329          
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Match: W2Q5T5_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q5T5_PHYPN)

HSP 1 Score: 116 bits (291), Expect = 1.800e-27
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    4 CLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAYDGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGE----SLGPAWVGISPHGGLMPALTL-QSSRIRVNFGQKPFRAPPPAPGFR 432
            CL++ GRWY+EA IL      Q+GWAD++F G++D G GVGD AHSWAYDG R        RWH     +G  W +GDVVG   D D   I F+LNG+    ++G A+  I    G+ P  +  +  R++ N G  PF+ PPP PGF+
Sbjct: 2759 CLVSSGRWYYEA-ILHTNGCIQIGWADVAFCGAADRGDGVGDGAHSWAYDGWRQQ------RWHGRSSPWGSKWKQGDVVGCGIDADAGTIIFSLNGKMRSANMGVAFRAIDFARGVYPCASFNRRERLQFNLGGTPFKYPPP-PGFQ 2898          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119880.4108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CT96_CAFRO6.180e-4155.71Uncharacterized protein n=9 Tax=Cafeteria roenberg... [more]
A0A024GC57_9STRA4.350e-2943.92Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7R9U6N5_9STRA5.690e-2945.58Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A5D6YUG8_9STRA5.940e-2945.58Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WEA1_9STRA2.800e-2843.92HECT E3 ubiquitin ligase putative n=1 Tax=Albugo l... [more]
A0A6P8IEF7_ACTTE9.550e-2845.00NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax... [more]
A0A2R5GYN2_9STRA9.720e-2841.55Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Hondaea ... [more]
G4ZDA2_PHYSP1.320e-2743.92Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
M4C5C4_HYAAE1.770e-2742.57Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W2Q5T5_PHYPN1.800e-2743.92Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119880contigM-pyrifera_M_contig119880:6..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue6.2e-25
Seed eggNOG ortholog112098.XP_008604658.1
KEGG koko:K10608
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2177@1,KOG2177@2759,KOG2242@1,KOG2242@2759
EC2.3.2.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.937917-CDS-M-pyrifera_M_contig119880:5..4371622815718.937917-CDS-M-pyrifera_M_contig119880:5..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119880 6..437 +
1692277536.9382265-CDS-M-pyrifera_M_contig119880:5..4371692277536.9382265-CDS-M-pyrifera_M_contig119880:5..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119880 6..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119880.4108.1prot_M-pyrifera_M_contig119880.4108.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119880 6..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119880.4108.1

>prot_M-pyrifera_M_contig119880.4108.1 ID=prot_M-pyrifera_M_contig119880.4108.1|Name=mRNA_M-pyrifera_M_contig119880.4108.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
GCLLTRGRWYFEATILRPGDASQLGWADLSFSGSSDFGKGVGDDAHSWAY
DGDRSYTPGKALRWHREPGDYGRLWARGDVVGFAADLDRRIIEFTLNGES
LGPAWVGISPHGGLMPALTLQSSRIRVNFGQKPFRAPPPAPGFR
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mRNA from alignment at M-pyrifera_M_contig119880:6..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119880.4108.1 ID=mRNA_M-pyrifera_M_contig119880.4108.1|Name=mRNA_M-pyrifera_M_contig119880.4108.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig119880:6..437+ (Macrocystis pyrifera P11B4 male)
GGTTGTTTGCTAACACGTGGTCGGTGGTATTTTGAAGCAACAATTCTACG ACCAGGTGATGCTTCGCAACTTGGCTGGGCAGACTTGAGTTTTAGTGGGA GCTCTGATTTTGGAAAAGGAGTGGGAGACGATGCTCATTCCTGGGCGTAT GATGGTGATCGGTCGTACACTCCTGGGAAAGCGCTTCGTTGGCATCGTGA ACCAGGAGATTATGGACGCTTGTGGGCACGTGGTGATGTCGTTGGATTTG CTGCAGATTTAGATCGACGCATCATTGAATTCACTCTCAATGGTGAATCC TTAGGCCCTGCTTGGGTTGGTATTTCTCCACATGGTGGATTAATGCCAGC ATTGACCCTTCAAAGTTCACGAATTCGAGTCAACTTTGGACAAAAGCCGT TCCGTGCACCACCTCCAGCTCCAGGCTTCCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119880:6..437+

>mRNA_M-pyrifera_M_contig119880.4108.1 ID=mRNA_M-pyrifera_M_contig119880.4108.1|Name=mRNA_M-pyrifera_M_contig119880.4108.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig119880:6..437+ (Macrocystis pyrifera P11B4 male)
GGTTGTTTGCTAACACGTGGTCGGTGGTATTTTGAAGCAACAATTCTACG
ACCAGGTGATGCTTCGCAACTTGGCTGGGCAGACTTGAGTTTTAGTGGGA
GCTCTGATTTTGGAAAAGGAGTGGGAGACGATGCTCATTCCTGGGCGTAT
GATGGTGATCGGTCGTACACTCCTGGGAAAGCGCTTCGTTGGCATCGTGA
ACCAGGAGATTATGGACGCTTGTGGGCACGTGGTGATGTCGTTGGATTTG
CTGCAGATTTAGATCGACGCATCATTGAATTCACTCTCAATGGTGAATCC
TTAGGCCCTGCTTGGGTTGGTATTTCTCCACATGGTGGATTAATGCCAGC
ATTGACCCTTCAAAGTTCACGAATTCGAGTCAACTTTGGACAAAAGCCGT
TCCGTGCACCACCTCCAGCTCCAGGCTTCCGTGGTTGTTTGCTAACACGT
GGTCGGTGGTATTTTGAAGCAACAATTCTACGACCAGGTGATGCTTCGCA
ACTTGGCTGGGCAGACTTGAGTTTTAGTGGGAGCTCTGATTTTGGAAAAG
GAGTGGGAGACGATGCTCATTCCTGGGCGTATGATGGTGATCGGTCGTAC
ACTCCTGGGAAAGCGCTTCGTTGGCATCGTGAACCAGGAGATTATGGACG
CTTGTGGGCACGTGGTGATGTCGTTGGATTTGCTGCAGATTTAGATCGAC
GCATCATTGAATTCACTCTCAATGGTGAATCCTTAGGCCCTGCTTGGGTT
GGTATTTCTCCACATGGTGGATTAATGCCAGCATTGACCCTTCAAAGTTC
ACGAATTCGAGTCAACTTTGGACAAAAGCCGTTCCGTGCACCACCTCCAG
CTCCAGGCTTCCGT
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