mRNA_M-pyrifera_M_contig119873.4105.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A3Q3EDM6_KRYMA (Replication protein A subunit n=2 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3EDM6_KRYMA) HSP 1 Score: 124 bits (311), Expect = 2.800e-30 Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D I T F +E+++ RD +DVIGV A D S ITTK G E++KR L + D+TGK V++T WG++ EK S +VAVKGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ GG A ++LT
Sbjct: 285 DSEGIPTVQCDFVPIEELENRDKDDIVDVIGVCKSAEDVSRITTKTGREVSKRALNLIDKTGKEVAVTLWGEEAEKFDGSGQP----VVAVKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDHGGYAVDSQSLT 421
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A2I4BXB0_9TELE (Replication protein A subunit n=3 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4BXB0_9TELE) HSP 1 Score: 124 bits (311), Expect = 3.380e-30 Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 1
Query: 1 DDG-KIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D+G +I T H F +E+++ RD ID+IGV A D S +TTK E++KR L++ D TGK V++T WG++ EK S +VA+KGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ GG A ++LT
Sbjct: 342 DEGDEIPTLHCDFVPIEELENRDKDAIIDIIGVCKSAEDVSRVTTKTSREVSKRALSLIDMTGKEVTVTLWGEEAEKFDGSGEP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQGGYALDSQSLT 479
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A672FTN3_SALFA (Replication protein A subunit n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672FTN3_SALFA) HSP 1 Score: 122 bits (306), Expect = 1.300e-29 Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D + T H F + +++ RD +DVIGV A+D S ITTK E++KR L++ D TGK+V++T WG++ EK S +VA+KGAR+ DFGGRSLS + VMVNP+IPEA +L+AW++ GG A ++LT
Sbjct: 272 DSEGVPTLHCDFVPIAELENRDKDAVLDVIGVCKSADDVSRITTKNSREVSKRALSLIDTTGKAVTVTLWGEEAEKFDGSGEP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFSLRAWYDQGGYALDGQSLT 408
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A672FLV3_SALFA (Replication protein A subunit n=3 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672FLV3_SALFA) HSP 1 Score: 122 bits (306), Expect = 1.660e-29 Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D + T H F + +++ RD +DVIGV A+D S ITTK E++KR L++ D TGK+V++T WG++ EK S +VA+KGAR+ DFGGRSLS + VMVNP+IPEA +L+AW++ GG A ++LT
Sbjct: 353 DSEGVPTLHCDFVPIAELENRDKDAVLDVIGVCKSADDVSRITTKNSREVSKRALSLIDTTGKAVTVTLWGEEAEKFDGSGEP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFSLRAWYDQGGYALDGQSLT 489
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: UPI0012EE17A6 (replication protein A 70 kDa DNA-binding subunit-like n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EE17A6) HSP 1 Score: 118 bits (295), Expect = 2.270e-29 Identity = 62/141 (43.97%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D I H F + +++ RD IDVIGV A+D S ITTK E++KR L + D TGK V++T WG++ EK S +VA+KGAR+ D+GGRSLS + + V+VNP++PEA +L+AW++ GG A ++LT
Sbjct: 136 DSQDIPAVHCDFVPIAELENRDKDAVIDVIGVCKSADDVSRITTKNSREVSKRALNLIDTTGKVVTVTVWGEEAEKFDGSRHP----VVAIKGARLSDYGGRSLSASFSSTVLVNPDLPEAFSLRAWYDQGGYAIDSQSLT 272
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: UPI001C4C3AF1 (replication protein A 70 kDa DNA-binding subunit-like isoform X1 n=4 Tax=Thunnus TaxID=8234 RepID=UPI001C4C3AF1) HSP 1 Score: 121 bits (304), Expect = 3.230e-29 Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D + T H F + +++ RDP IDVIGV A +A+ ITTK E+TKR L + D TGK V+ T WG++ EK S +VA+KGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ G A ++LT
Sbjct: 378 DTQDVPTLHCDFVPIAELENRDPDSIIDVIGVCKSAEEATRITTKTSREVTKRALNLIDTTGKVVTATLWGEEAEKFDSSGQP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQKGYALNSQSLT 514
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A671U190_SPAAU (Replication protein A subunit n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671U190_SPAAU) HSP 1 Score: 120 bits (301), Expect = 3.820e-29 Identity = 67/142 (47.18%), Postives = 90/142 (63.38%), Query Frame = 1
Query: 1 DDGK-IKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
DDG+ I H F + +++ RD IDVIGV A+D S ITTK E++KR L + D TGK V++T WG++ EK S +VAVKGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ G A+ ++LT
Sbjct: 226 DDGQGIPAVHCDFVPIAELENRDKDAIIDVIGVCKSADDVSRITTKTSREVSKRALNLIDTTGKEVAVTLWGEEAEKFDASGQP----VVAVKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWFDREGYAANSQSLT 363
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: UPI0011E9BAA3 (replication protein A 70 kDa DNA-binding subunit-like isoform X1 n=4 Tax=Archocentrus centrarchus TaxID=63155 RepID=UPI0011E9BAA3) HSP 1 Score: 120 bits (301), Expect = 7.790e-29 Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 1 DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
D+ I T H F + +++ RD IDVIG+ A D S ITTK E++KR L++ D TGK V++T WG++ EK S+ +VA+KGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ G A ++LT
Sbjct: 341 DNQSIPTVHCDFVPIGELENRDKDAIIDVIGICKSAEDVSRITTKNSREVSKRALSLIDTTGKDVTVTLWGEEAEKFDGSTQP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQEGYALASQSLT 477
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: A0A4W6FMQ3_LATCA (Replication protein A subunit n=4 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6FMQ3_LATCA) HSP 1 Score: 119 bits (299), Expect = 1.020e-28 Identity = 68/142 (47.89%), Postives = 89/142 (62.68%), Query Frame = 1
Query: 1 DDGK-IKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
DDG+ I T H F + +++ RD IDVIGV A D S ITTK E++KR L + D TGK V++T WG++ EK S +VAVKGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ G A ++LT
Sbjct: 235 DDGQDIPTVHCDFVPIAELENRDKDTIIDVIGVCKSAEDVSRITTKSSREVSKRALNLIDTTGKVVTVTLWGEEAEKFDGSGQP----VVAVKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDRTGYALHSQSLT 372
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Match: UPI001ED7EB70 (replication protein A 70 kDa DNA-binding subunit-like isoform X1 n=2 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED7EB70) HSP 1 Score: 120 bits (300), Expect = 1.110e-28 Identity = 66/142 (46.48%), Postives = 88/142 (61.97%), Query Frame = 1
Query: 1 DDGK-IKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELTKRDLTIADRTGKSVSLTFWGDQVEKLPPSSSELVGSIVAVKGARIGDFGGRSLSTNRGADVMVNPEIPEASALKAWWESGGSASGLEALT 423
DDG + T H F + +++ RD IDVIGV D S ITTK E++KR L + DRTGK V++T WG++ EK S +VA+KGAR+ DFGGRSLS + VMVNP+IPEA L+AW++ G A ++LT
Sbjct: 362 DDGVGVPTVHCDFVPIAELENRDKDAIIDVIGVCKSVEDVSRITTKTSREVSKRALKLIDRTGKEVAVTLWGEEAEKFDGSGQP----VVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQEGFAQDSQSLT 499 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119873.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119873.4105.1 >prot_M-pyrifera_M_contig119873.4105.1 ID=prot_M-pyrifera_M_contig119873.4105.1|Name=mRNA_M-pyrifera_M_contig119873.4105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp DDGKIKTFHFSFTDLEQVQIRDPGQSIDVIGVVAEANDASTITTKKGSELback to top mRNA from alignment at M-pyrifera_M_contig119873:91..537- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119873.4105.1 ID=mRNA_M-pyrifera_M_contig119873.4105.1|Name=mRNA_M-pyrifera_M_contig119873.4105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig119873:91..537- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119873:91..537- >mRNA_M-pyrifera_M_contig119873.4105.1 ID=mRNA_M-pyrifera_M_contig119873.4105.1|Name=mRNA_M-pyrifera_M_contig119873.4105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig119873:91..537- (Macrocystis pyrifera P11B4 male)back to top |