mRNA_M-pyrifera_M_contig119865.4102.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119865.4102.1
Unique NamemRNA_M-pyrifera_M_contig119865.4102.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119865.4102.1 vs. uniprot
Match: A0A2D5ARZ8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ARZ8_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.980e-12
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 GGFQGPGTGLLETGSTWLVTAAWLGAAAALVGGAGRLRMRGVVVGXXXXXXXXXXGLPGVLELYRQLPLVGLGDTVRFAPVAALMVGLLAGAGLEAAWRARLFGLVPVLAV 333
            GG++G GT  +E  S W+     L A A ++GG G LR R ++ G           LP +++LYR +P+VGLG TVR A V+ALM+GLLAG  LE++ R   F     LAV
Sbjct:  396 GGYRGEGT-FVENASAWVSFPVLLLAFAGVLGGQGVLRRRALICGLAVVSFLLAIELPFLVDLYRFVPVVGLGATVRCASVSALMLGLLAGDALESSGRLARFAAGVTLAV 505
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BLAST of mRNA_M-pyrifera_M_contig119865.4102.1 vs. uniprot
Match: A0A518CX63_9BACT (Bacterial membrane protein YfhO n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CX63_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-10
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    1 GGFQGPGTGLLETGSTWLVTAAWLGAAAALVGGAGRLRMRGVVVGXXXXXXXXXXGLPGVLELYRQLPLVGLGDTVRFAPVAALMVGLLAGAGLEAAWRA-RLFGLVPVLAV 333
            GG+ GPG+  LE  S +   A    A A++  G+G LR RGV++             PG+LEL +Q+P +GLG TVR APVAAL + LLA  G + + R+ R+ G+V VLA+
Sbjct:  384 GGYLGPGS-YLEEASLFAPLAIAALALASIARGSGPLRGRGVLIVGTALAWWLAQRAPGLLELKQQIPKIGLGATVRLAPVAALGIALLAAEGWQVSKRSGRVLGMVGVLAL 494
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BLAST of mRNA_M-pyrifera_M_contig119865.4102.1 vs. uniprot
Match: A0A518BQ02_9BACT (Bacterial membrane protein YfhO n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BQ02_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.220e-8
Identity = 48/119 (40.34%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:    7 FQGPGTGLL---------ETGSTWLVTAAWLGAAAALVGGAGRLRMRGVVVGXXXXXXXXXXGLPGVLELYRQLPLVGLGDTVRFAPVAALMVGLLAGAGLEAA-WRARLFGLVPVLAV 333
            F  PG GL          E  S+WL     L A AAL    G +R RG+ +            +PG+LEL R LP+VGLG TVR A V+AL + L AG+ L+ A  RAR   +V  LA+
Sbjct:  356 FGRPGDGLAGWIGPRAYTEEASSWLPALVLLSALAALFSPRGAMRRRGLCLCLGFGALALVLRVPGLLELKRTLPVVGLGATVRLAAVSALALSLAAGSALDQAPARARRAAVVLALAL 474
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119865.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D5ARZ8_9BACT2.980e-1243.24Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CX63_9BACT1.240e-1042.86Bacterial membrane protein YfhO n=1 Tax=Planctomyc... [more]
A0A518BQ02_9BACT6.220e-840.34Bacterial membrane protein YfhO n=1 Tax=Planctomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119865contigM-pyrifera_M_contig119865:210..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.6153839-CDS-M-pyrifera_M_contig119865:209..5421622815718.6153839-CDS-M-pyrifera_M_contig119865:209..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119865 210..542 -
1692277536.7676363-CDS-M-pyrifera_M_contig119865:209..5421692277536.7676363-CDS-M-pyrifera_M_contig119865:209..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119865 210..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119865.4102.1prot_M-pyrifera_M_contig119865.4102.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119865 210..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119865.4102.1

>prot_M-pyrifera_M_contig119865.4102.1 ID=prot_M-pyrifera_M_contig119865.4102.1|Name=mRNA_M-pyrifera_M_contig119865.4102.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
GGFQGPGTGLLETGSTWLVTAAWLGAAAALVGGAGRLRMRGVVVGVGALA
LALALGLPGVLELYRQLPLVGLGDTVRFAPVAALMVGLLAGAGLEAAWRA
RLFGLVPVLAV
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mRNA from alignment at M-pyrifera_M_contig119865:210..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119865.4102.1 ID=mRNA_M-pyrifera_M_contig119865.4102.1|Name=mRNA_M-pyrifera_M_contig119865.4102.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig119865:210..542- (Macrocystis pyrifera P11B4 male)
GGCGGGTTCCAGGGGCCGGGGACCGGGTTGCTCGAGACGGGCAGCACGTG
GTTGGTGACCGCGGCGTGGCTCGGGGCGGCGGCGGCGCTGGTCGGGGGCG
CGGGGCGCTTGCGGATGCGCGGCGTGGTCGTCGGGGTCGGCGCGCTGGCG
CTGGCGTTGGCGCTGGGGCTGCCGGGGGTGCTCGAGCTCTACCGCCAGCT
GCCGCTGGTCGGGCTGGGCGACACGGTGCGGTTCGCGCCGGTGGCGGCGT
TGATGGTCGGGCTGCTGGCGGGTGCGGGGCTCGAAGCGGCGTGGCGCGCG
CGGCTGTTCGGGCTCGTGCCGGTGCTGGCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119865:210..542-

>mRNA_M-pyrifera_M_contig119865.4102.1 ID=mRNA_M-pyrifera_M_contig119865.4102.1|Name=mRNA_M-pyrifera_M_contig119865.4102.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig119865:210..542- (Macrocystis pyrifera P11B4 male)
GGCGGGTTCCAGGGGCCGGGGACCGGGTTGCTCGAGACGGGCAGCACGTG
GTTGGTGACCGCGGCGTGGCTCGGGGCGGCGGCGGCGCTGGTCGGGGGCG
CGGGGCGCTTGCGGATGCGCGGCGTGGTCGTCGGGGTCGGCGCGCTGGCG
CTGGCGTTGGCGCTGGGGCTGCCGGGGGTGCTCGAGCTCTACCGCCAGCT
GCCGCTGGTCGGGCTGGGCGACACGGTGCGGTTCGCGCCGGTGGCGGCGT
TGATGGTCGGGCTGCTGGCGGGTGCGGGGCTCGAAGCGGCGTGGCGCGCG
CGGCTGTTCGGGCTCGTGCCGGTGCTGGCGGTCGGCGGGTTCCAGGGGCC
GGGGACCGGGTTGCTCGAGACGGGCAGCACGTGGTTGGTGACCGCGGCGT
GGCTCGGGGCGGCGGCGGCGCTGGTCGGGGGCGCGGGGCGCTTGCGGATG
CGCGGCGTGGTCGTCGGGGTCGGCGCGCTGGCGCTGGCGTTGGCGCTGGG
GCTGCCGGGGGTGCTCGAGCTCTACCGCCAGCTGCCGCTGGTCGGGCTGG
GCGACACGGTGCGGTTCGCGCCGGTGGCGGCGTTGATGGTCGGGCTGCTG
GCGGGTGCGGGGCTCGAAGCGGCGTGGCGCGCGCGGCTGTTCGGGCTCGT
GCCGGTGCTGGCGGTC
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