mRNA_M-pyrifera_M_contig119863.4101.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119863.4101.1
Unique NamemRNA_M-pyrifera_M_contig119863.4101.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A6I6A9X7_9PLAN (DUF1549 domain-containing protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A9X7_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 1.460e-63
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1
Query:    1 MLDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            MLDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLE DS
Sbjct:   31 MLDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEGDS 135          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A517RCV3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RCV3_9PLAN)

HSP 1 Score: 159 bits (401), Expect = 3.510e-43
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    4 LDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            L AA+ +        ++KV+F TDVVPLLT+LNCNSGGCHGKSTGQNGFKISLLGF+P +DYSA+  +SRGRRIFP DPDRSLLLLKA G VPHGGG+LLE DS
Sbjct:   32 LQAAENSNQAKPAQLEQKVHFLTDVVPLLTKLNCNSGGCHGKSTGQNGFKISLLGFEPELDYSAMTLQSRGRRIFPADPDRSLLLLKAIGRVPHGGGKLLEYDS 135          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A5C9CGB8_9BACT (Ig-like domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CGB8_9BACT)

HSP 1 Score: 138 bits (348), Expect = 3.770e-38
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 1
Query:   22 TPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            +P  +A     ++ F  DV P+LT+L CNSGGCHGKSTGQNGF++SLLGF+PA D+ A+  E RGRRIF  DPDRSLLL KATG VPHGGG+ LE DS
Sbjct:   29 SPLTSAAEPSSRITFNNDVGPILTKLACNSGGCHGKSTGQNGFRLSLLGFEPAFDHDALLPEGRGRRIFVSDPDRSLLLQKATGRVPHGGGKRLEVDS 126          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A2E1KU59_9PLAN (S-layer protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KU59_9PLAN)

HSP 1 Score: 139 bits (350), Expect = 4.030e-36
Identity = 59/94 (62.77%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   31 LAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEAD 312
            + AD+ + ++ F++D+VP+LT+L CNSGGCHGK+TGQ  FK+SLLGFDP +DY A+ +E+RGRR+FPG PDRSL+LLKAT  +PHGGGR L  D
Sbjct:  131 IGADNQRPEIRFSSDIVPVLTKLGCNSGGCHGKATGQGQFKLSLLGFDPPLDYLALVKEARGRRLFPGAPDRSLMLLKATAQMPHGGGRRLAVD 224          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A7C7XAI5_9PLAN (DUF1549 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7XAI5_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 4.840e-36
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   28 ALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            A+A  S +  +YF +DVVP+LT+L CNSG CHGK+TGQNGFK+SLLGF+P +D+ AIA E+RGRR+ P  PD+SLLL+KAT   PHGGGR LE DS
Sbjct:   22 AVATASEEGPIYFASDVVPILTKLGCNSGACHGKATGQNGFKLSLLGFEPELDFRAIAHEARGRRLSPAFPDQSLLLMKATARTPHGGGRRLERDS 117          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A3D2U942_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3D2U942_9PLAN)

HSP 1 Score: 139 bits (349), Expect = 5.050e-36
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1
Query:   28 ALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            A+ A  A  +V F TDVVP+LT+L CNSGGCHGKSTGQNGFK+SLLGF P+ D+ ++ +E+RGRR+F GDPD SLLL KA G VPHGGGR L  DS
Sbjct:   53 AVGAADAVGRVAFATDVVPILTKLGCNSGGCHGKSTGQNGFKLSLLGFVPSYDHESMVKEARGRRVFAGDPDSSLLLQKAIGRVPHGGGRRLGTDS 148          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A382J2C7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382J2C7_9ZZZZ)

HSP 1 Score: 130 bits (328), Expect = 9.350e-36
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1
Query:   31 LAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            ++A SA++ V F   +VPL T+  C+SGGCHGKS+GQNGFK+SLLGF+P  DY  + RE+RGRRIFP  P+RSLLLLKATG +PHGGG  ++A S
Sbjct:   98 VSAVSAEKPVSFPNSIVPLFTKHGCSSGGCHGKSSGQNGFKLSLLGFEPLEDYEYLLREARGRRIFPAAPERSLLLLKATGQLPHGGGSRIDAGS 192          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A3B9D0S0_9PLAN (S-layer protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9D0S0_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 3.040e-35
Identity = 60/86 (69.77%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   58 VYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            VYF +D+VP+LTR  CNSGGCHGK+TGQNGFK+SL GFDP  D+SAI    RGRRIFP DP  SLLL KATG VPHGGGR +   S
Sbjct:   37 VYFASDIVPILTRRGCNSGGCHGKATGQNGFKLSLFGFDPEFDHSAIVTAQRGRRIFPADPGFSLLLKKATGAVPHGGGRRITEAS 122          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A3L7N7U5_9BACT (DUF1549 domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7N7U5_9BACT)

HSP 1 Score: 132 bits (331), Expect = 9.380e-35
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 1
Query:   58 VYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            V F T+VVP+LTRL CNSGGCHGK+TGQNGF++SLLGF+P  DY AI RESRGRR+FP   ++SLLLLK T  +PHGGG+ L+A S
Sbjct:   38 VRFGTEVVPVLTRLGCNSGGCHGKATGQNGFRLSLLGFEPEFDYEAIVRESRGRRLFPAAAEQSLLLLKGTAQMPHGGGKRLDAGS 123          
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Match: A0A8J8NBA2_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NBA2_HALGN)

HSP 1 Score: 134 bits (338), Expect = 1.540e-34
Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    4 LDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGFKISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRLLEADS 315
            L A  ++  LA  +    V F  DVVP+LTRL CN GGCHGK++GQNGF +SLLGF+P  DY  +  E RGRR+FP DPDRSL+LLKAT  VPHGGGRL++  S
Sbjct:   20 LIAVTQSATLAGVTEIEHVRFGLDVVPILTRLGCNGGGCHGKASGQNGFMLSLLGFEPEFDYRTLVLEDRGRRVFPADPDRSLILLKATASVPHGGGRLIDRSS 123          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119863.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A9X7_9PLAN1.460e-6399.05DUF1549 domain-containing protein n=10 Tax=Gimesia... [more]
A0A517RCV3_9PLAN3.510e-4372.12Uncharacterized protein n=2 Tax=Gimesia alba TaxID... [more]
A0A5C9CGB8_9BACT3.770e-3864.29Ig-like domain-containing protein (Fragment) n=1 T... [more]
A0A2E1KU59_9PLAN4.030e-3662.77S-layer protein n=1 Tax=Planctomycetaceae bacteriu... [more]
A0A7C7XAI5_9PLAN4.840e-3664.58DUF1549 domain-containing protein n=1 Tax=Planctom... [more]
A0A3D2U942_9PLAN5.050e-3666.67Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A382J2C7_9ZZZZ9.350e-3662.11Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3B9D0S0_9PLAN3.040e-3569.77S-layer protein (Fragment) n=1 Tax=Planctomycetace... [more]
A0A3L7N7U5_9BACT9.380e-3568.60DUF1549 domain-containing protein (Fragment) n=1 T... [more]
A0A8J8NBA2_HALGN1.540e-3459.62Uncharacterized protein n=1 Tax=Halteria grandinel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119863contigM-pyrifera_M_contig119863:228..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score133.3
Seed ortholog evalue6.8e-29
Seed eggNOG ortholog1123508.JH636439_gene1372
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1549)
EggNOG OGs2IXPF@203682,COG5492@1,COG5492@2
COG Functional cat.N
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.5726914-CDS-M-pyrifera_M_contig119863:227..5421622815718.5726914-CDS-M-pyrifera_M_contig119863:227..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119863 228..542 +
1692277536.7560432-CDS-M-pyrifera_M_contig119863:227..5421692277536.7560432-CDS-M-pyrifera_M_contig119863:227..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119863 228..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119863.4101.1prot_M-pyrifera_M_contig119863.4101.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119863 228..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119863.4101.1

>prot_M-pyrifera_M_contig119863.4101.1 ID=prot_M-pyrifera_M_contig119863.4101.1|Name=mRNA_M-pyrifera_M_contig119863.4101.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MLDAADKTPALAADSAKRKVYFTTDVVPLLTRLNCNSGGCHGKSTGQNGF
KISLLGFDPAMDYSAIARESRGRRIFPGDPDRSLLLLKATGLVPHGGGRL
LEADS
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mRNA from alignment at M-pyrifera_M_contig119863:228..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119863.4101.1 ID=mRNA_M-pyrifera_M_contig119863.4101.1|Name=mRNA_M-pyrifera_M_contig119863.4101.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig119863:228..542+ (Macrocystis pyrifera P11B4 male)
ATGCTGGACGCTGCTGATAAGACGCCAGCTCTGGCTGCGGATTCAGCGAA ACGGAAGGTGTATTTCACTACGGATGTGGTACCTCTGTTGACCAGGTTGA ACTGCAATAGTGGGGGCTGTCACGGAAAATCGACGGGGCAGAATGGGTTT AAAATCTCCCTGCTCGGTTTTGATCCTGCCATGGATTATTCTGCGATCGC GAGGGAATCACGGGGGAGACGAATCTTTCCCGGTGATCCCGATCGAAGTC TGCTGCTGCTCAAGGCAACAGGTCTGGTGCCCCATGGTGGAGGGCGGTTA CTGGAAGCAGATTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119863:228..542+

>mRNA_M-pyrifera_M_contig119863.4101.1 ID=mRNA_M-pyrifera_M_contig119863.4101.1|Name=mRNA_M-pyrifera_M_contig119863.4101.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig119863:228..542+ (Macrocystis pyrifera P11B4 male)
ATGCTGGACGCTGCTGATAAGACGCCAGCTCTGGCTGCGGATTCAGCGAA
ACGGAAGGTGTATTTCACTACGGATGTGGTACCTCTGTTGACCAGGTTGA
ACTGCAATAGTGGGGGCTGTCACGGAAAATCGACGGGGCAGAATGGGTTT
AAAATCTCCCTGCTCGGTTTTGATCCTGCCATGGATTATTCTGCGATCGC
GAGGGAATCACGGGGGAGACGAATCTTTCCCGGTGATCCCGATCGAAGTC
TGCTGCTGCTCAAGGCAACAGGTCTGGTGCCCCATGGTGGAGGGCGGTTA
CTGGAAGCAGATTCCATGCTGGACGCTGCTGATAAGACGCCAGCTCTGGC
TGCGGATTCAGCGAAACGGAAGGTGTATTTCACTACGGATGTGGTACCTC
TGTTGACCAGGTTGAACTGCAATAGTGGGGGCTGTCACGGAAAATCGACG
GGGCAGAATGGGTTTAAAATCTCCCTGCTCGGTTTTGATCCTGCCATGGA
TTATTCTGCGATCGCGAGGGAATCACGGGGGAGACGAATCTTTCCCGGTG
ATCCCGATCGAAGTCTGCTGCTGCTCAAGGCAACAGGTCTGGTGCCCCAT
GGTGGAGGGCGGTTACTGGAAGCAGATTCC
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