mRNA_M-pyrifera_M_contig119863.4100.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119863.4100.1
Unique NamemRNA_M-pyrifera_M_contig119863.4100.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A517PKE4_9PLAN (PPC domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A517PKE4_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.550e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE 117
            DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE
Sbjct:  814 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE 852          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A518FMC3_9PLAN (PPC domain-containing protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FMC3_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.550e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE 117
            DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE
Sbjct:  813 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE 851          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A517RCV9_9PLAN (Putative subtilase-type serine protease n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RCV9_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.460e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEIT 105
            DAPLGKQP IRL AVGVVEDQ +YHGSCFL+LEIT
Sbjct:  806 DAPLGKQPSIRLFAVGVVEDQPIYHGSCFLDLEIT 840          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A7C7X1G4_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X1G4_9PLAN)

HSP 1 Score: 63.9 bits (154), Expect = 8.330e-11
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITN 108
            DAPLG+QPF+RL AVGV+ED+ V+HGSCFLNLE+ N
Sbjct:  780 DAPLGQQPFLRLYAVGVLEDEPVFHGSCFLNLEVVN 815          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A2E7D710_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D710_9PLAN)

HSP 1 Score: 61.2 bits (147), Expect = 7.420e-10
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEI 102
            DAP+G+QPF+RL AVGVVED+A+Y G CFLNLEI
Sbjct:  781 DAPIGRQPFLRLLAVGVVEDEAIYQGGCFLNLEI 814          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A3B9D0K3_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9D0K3_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.550e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITN 108
            DAP+G+Q F+RL  VGVVED+AVY G+CFLNLEIT+
Sbjct:  600 DAPVGRQKFLRLFTVGVVEDEAVYQGACFLNLEITD 635          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A517ZQX4_9PLAN (Uncharacterized protein n=3 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZQX4_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 6.630e-9
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEI 102
            DA LG+QPF+RL  +G VEDQ +YHGSCFLNLE+
Sbjct:  783 DAELGQQPFLRLYGIGTVEDQPIYHGSCFLNLEV 816          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A2E8D4R1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D4R1_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEI 102
            DA LG QPF+RL  VGV+ED+AVYHGSCFL LEI
Sbjct:  792 DAELGTQPFLRLYGVGVLEDEAVYHGSCFLPLEI 825          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A3E0Q2K4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q2K4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEI 102
            DAPLG+QP +RL  VGVVED+ V+HGSCFL+LEI
Sbjct:  791 DAPLGRQPSLRLYGVGVVEDEPVFHGSCFLDLEI 824          
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Match: A0A5C6B1G5_9PLAN (Uncharacterized protein n=2 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6B1G5_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.330e-8
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:    1 DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEI 102
            DA LG+QPF+RL  +G VEDQ +YHGSCFL LE+
Sbjct:  791 DAKLGQQPFLRLYGIGTVEDQPIYHGSCFLELEV 824          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119863.4100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A517PKE4_9PLAN3.550e-17100.00PPC domain-containing protein n=7 Tax=Gimesia TaxI... [more]
A0A518FMC3_9PLAN3.550e-17100.00PPC domain-containing protein n=4 Tax=Gimesia pana... [more]
A0A517RCV9_9PLAN4.460e-1185.71Putative subtilase-type serine protease n=1 Tax=Gi... [more]
A0A7C7X1G4_9PLAN8.330e-1175.00Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E7D710_9PLAN7.420e-1076.47Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3B9D0K3_9PLAN3.550e-972.22Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517ZQX4_9PLAN6.630e-970.59Uncharacterized protein n=3 Tax=Symmachiella dynat... [more]
A0A2E8D4R1_9PLAN2.320e-876.47Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3E0Q2K4_9BACT2.320e-873.53Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6B1G5_9PLAN4.330e-867.65Uncharacterized protein n=2 Tax=Symmachiella macro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119863contigM-pyrifera_M_contig119863:1..120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.5383034-CDS-M-pyrifera_M_contig119863:0..1201622815718.5383034-CDS-M-pyrifera_M_contig119863:0..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119863 1..120 +
1692277536.7445378-CDS-M-pyrifera_M_contig119863:0..1201692277536.7445378-CDS-M-pyrifera_M_contig119863:0..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119863 1..120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119863.4100.1prot_M-pyrifera_M_contig119863.4100.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119863 1..120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119863.4100.1

>prot_M-pyrifera_M_contig119863.4100.1 ID=prot_M-pyrifera_M_contig119863.4100.1|Name=mRNA_M-pyrifera_M_contig119863.4100.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
DAPLGKQPFIRLSAVGVVEDQAVYHGSCFLNLEITNSTE*
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mRNA from alignment at M-pyrifera_M_contig119863:1..120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119863.4100.1 ID=mRNA_M-pyrifera_M_contig119863.4100.1|Name=mRNA_M-pyrifera_M_contig119863.4100.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig119863:1..120+ (Macrocystis pyrifera P11B4 male)
GATGCCCCTTTAGGAAAACAGCCTTTCATACGTCTGTCTGCGGTCGGTGT TGTGGAAGATCAAGCAGTCTATCATGGAAGCTGTTTCCTGAATCTGGAAA TCACCAATTCAACTGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119863:1..120+

>mRNA_M-pyrifera_M_contig119863.4100.1 ID=mRNA_M-pyrifera_M_contig119863.4100.1|Name=mRNA_M-pyrifera_M_contig119863.4100.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig119863:1..120+ (Macrocystis pyrifera P11B4 male)
GATGCCCCTTTAGGAAAACAGCCTTTCATACGTCTGTCTGCGGTCGGTGT
TGTGGAAGATCAAGCAGTCTATCATGGAAGCTGTTTCCTGAATCTGGAAA
TCACCAATTCAACTGAGTAAGATGCCCCTTTAGGAAAACAGCCTTTCATA
CGTCTGTCTGCGGTCGGTGTTGTGGAAGATCAAGCAGTCTATCATGGAAG
CTGTTTCCTGAATCTGGAAATCACCAATTCAACTGAGTAA
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