mRNA_M-pyrifera_M_contig11986.4096.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11986.4096.1
Unique NamemRNA_M-pyrifera_M_contig11986.4096.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11986.4096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11986contigM-pyrifera_M_contig11986:7348..7660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.3733988-CDS-M-pyrifera_M_contig11986:7347..76591622815718.3733988-CDS-M-pyrifera_M_contig11986:7347..7659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11986 7348..7659 +
1692277536.676852-CDS-M-pyrifera_M_contig11986:7347..76591692277536.676852-CDS-M-pyrifera_M_contig11986:7347..7659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11986 7348..7659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11986.4096.1prot_M-pyrifera_M_contig11986.4096.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11986 7348..7659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11986.4096.1

>prot_M-pyrifera_M_contig11986.4096.1 ID=prot_M-pyrifera_M_contig11986.4096.1|Name=mRNA_M-pyrifera_M_contig11986.4096.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
AFPVHNSGGNPSQPTLRAQTPSNDERVFLPLLLSHVLIEFDPPPRRSHLV
YNPTPCCAVRLPVKRMPKIRRVRTARHDHHPPSLVVTSAATAAAAVSPPL
PGIF
back to top

mRNA from alignment at M-pyrifera_M_contig11986:7348..7660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11986.4096.1 ID=mRNA_M-pyrifera_M_contig11986.4096.1|Name=mRNA_M-pyrifera_M_contig11986.4096.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=313bp|location=Sequence derived from alignment at M-pyrifera_M_contig11986:7348..7660+ (Macrocystis pyrifera P11B4 male)
GCTTTCCCTGTTCATAACTCTGGCGGCAACCCATCGCAACCAACGCTCCG
AGCGCAAACACCCTCGAATGACGAGCGGGTTTTTCTTCCTCTCTTACTCT
CGCACGTGCTAATTGAATTTGACCCGCCTCCACGACGATCCCATCTGGTC
TACAACCCTACACCGTGCTGTGCGGTACGGTTACCGGTTAAGAGGATGCC
AAAAATTCGCCGGGTTCGGACTGCACGACACGACCATCATCCCCCCTCTC
TCGTCGTCACTAGTGCTGCTACTGCTGCTGCTGCTGTCTCGCCCCCCCTG
CCCGGAATTTTCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11986:7348..7660+

>mRNA_M-pyrifera_M_contig11986.4096.1 ID=mRNA_M-pyrifera_M_contig11986.4096.1|Name=mRNA_M-pyrifera_M_contig11986.4096.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig11986:7348..7660+ (Macrocystis pyrifera P11B4 male)
GCTTTCCCTGTTCATAACTCTGGCGGCAACCCATCGCAACCAACGCTCCG
AGCGCAAACACCCTCGAATGACGAGCGGGTTTTTCTTCCTCTCTTACTCT
CGCACGTGCTAATTGAATTTGACCCGCCTCCACGACGATCCCATCTGGTC
TACAACCCTACACCGTGCTGTGCGGTACGGTTACCGGTTAAGAGGATGCC
AAAAATTCGCCGGGTTCGGACTGCACGACACGACCATCATCCCCCCTCTC
TCGTCGTCACTAGTGCTGCTACTGCTGCTGCTGCTGTCTCGCCCCCCCTG
CCCGGAATTTTCGCTTTCCCTGTTCATAACTCTGGCGGCAACCCATCGCA
ACCAACGCTCCGAGCGCAAACACCCTCGAATGACGAGCGGGTTTTTCTTC
CTCTCTTACTCTCGCACGTGCTAATTGAATTTGACCCGCCTCCACGACGA
TCCCATCTGGTCTACAACCCTACACCGTGCTGTGCGGTACGGTTACCGGT
TAAGAGGATGCCAAAAATTCGCCGGGTTCGGACTGCACGACACGACCATC
ATCCCCCCTCTCTCGTCGTCACTAGTGCTGCTACTGCTGCTGCTGCTGTC
TCGCCCCCCCTGCCCGGAATTTTC
back to top