mRNA_M-pyrifera_M_contig11984.4089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11984.4089.1
Unique NamemRNA_M-pyrifera_M_contig11984.4089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: PSBE_PHATC (Cytochrome b559 subunit alpha n=39 Tax=cellular organisms TaxID=131567 RepID=PSBE_PHATC)

HSP 1 Score: 172 bits (437), Expect = 1.060e-54
Identity = 79/84 (94.05%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: PSBE_THAPS (Cytochrome b559 subunit alpha n=117 Tax=Eukaryota TaxID=2759 RepID=PSBE_THAPS)

HSP 1 Score: 172 bits (436), Expect = 1.500e-54
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIH+ITIPSLF+SGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHTITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL 84
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BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: A0A3G1I9C5_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Batrachospermaceae TaxID=31371 RepID=A0A3G1I9C5_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 4.740e-53
Identity = 77/84 (91.67%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYW+IHSITIPSLFI+GWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELE+LT+G+
Sbjct:   33 MSGGSTGERPFSDIITSIRYWVIHSITIPSLFIAGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEELTKGI 116
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BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: PSBE_GUITH (Cytochrome b559 subunit alpha n=32 Tax=Eukaryota TaxID=2759 RepID=PSBE_GUITH)

HSP 1 Score: 168 bits (426), Expect = 5.050e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYWIIHSITIP+LF++GWLF+STGLAYD+FGTPRPNEYFTQ+RQQVPLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPALFVAGWLFVSTGLAYDIFGTPRPNEYFTQERQQVPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: A0A6M3WCX6_COROI (Cytochrome b559 subunit alpha n=87 Tax=Florideophyceae TaxID=2806 RepID=A0A6M3WCX6_COROI)

HSP 1 Score: 169 bits (428), Expect = 5.070e-53
Identity = 75/84 (89.29%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYW+IHSITIP+LF++GWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAK+ELEDLT+G+
Sbjct:   24 MSGGSTGERPFSDIITSIRYWVIHSITIPALFVAGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGI 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: A0A6B9TNT0_SARFS (Cytochrome b559 subunit alpha n=16 Tax=Fucales TaxID=3009 RepID=A0A6B9TNT0_SARFS)

HSP 1 Score: 167 bits (423), Expect = 1.450e-52
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLF+STGLAYDVFGTPRPNEYFTQDRQQVPLVNDRF+  +E+ED TRGL
Sbjct:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFVSTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFNVTQEIEDFTRGL 84
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BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: PSBE_EMIHU (Cytochrome b559 subunit alpha n=17 Tax=cellular organisms TaxID=131567 RepID=PSBE_EMIHU)

HSP 1 Score: 166 bits (419), Expect = 5.910e-52
Identity = 75/84 (89.29%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITS+RYWIIHSITIPSLF++G+LF+STGLAYD FGTPRPNEYFTQDRQQ+PLVNDRFSAK+ELEDLT+GL
Sbjct:    1 MSGGSTGERPFSDIITSIRYWIIHSITIPSLFVAGFLFVSTGLAYDAFGTPRPNEYFTQDRQQIPLVNDRFSAKQELEDLTKGL 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: A0A1C9CFD7_9FLOR (Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandiaceae TaxID=31478 RepID=A0A1C9CFD7_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 1.270e-51
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPFSDIITSVRYW+IHSITIPSLFI+GWLF+STGLAYDVFGTPRP+EYFTQDRQQVPL+NDRFS K+ELEDLT+ +
Sbjct:    1 MSGGSTGERPFSDIITSVRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPDEYFTQDRQQVPLINDRFSVKQELEDLTKSI 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: A0A0D3M5E1_9STRA (Cytochrome b559 subunit alpha n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0D3M5E1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.330e-51
Identity = 74/81 (91.36%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:   10 GSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            GSTGERPFSDIITS+RYWIIHSITIPSLF+SGWLF+STGLAYDVFGTPRPNEYF+QDRQQVPLVNDRF+AK+ELEDLT+GL
Sbjct:    3 GSTGERPFSDIITSIRYWIIHSITIPSLFVSGWLFVSTGLAYDVFGTPRPNEYFSQDRQQVPLVNDRFNAKQELEDLTKGL 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Match: M1JFG4_DIALT (Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1JFG4_DIALT)

HSP 1 Score: 163 bits (412), Expect = 6.920e-51
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL 252
            MSGGSTGERPF DIITS+RYWIIHSITIPSLF++GWLF++TGLAYD+FGTPRPNEYFT DRQQVPLVNDRFSAK+ELEDLT+ L
Sbjct:    1 MSGGSTGERPFVDIITSIRYWIIHSITIPSLFVAGWLFVATGLAYDIFGTPRPNEYFTADRQQVPLVNDRFSAKQELEDLTKSL 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11984.4089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBE_PHATC1.060e-5494.05Cytochrome b559 subunit alpha n=39 Tax=cellular or... [more]
PSBE_THAPS1.500e-5495.24Cytochrome b559 subunit alpha n=117 Tax=Eukaryota ... [more]
A0A3G1I9C5_9FLOR4.740e-5391.67Cytochrome b559 subunit alpha n=3 Tax=Batrachosper... [more]
PSBE_GUITH5.050e-5389.29Cytochrome b559 subunit alpha n=32 Tax=Eukaryota T... [more]
A0A6M3WCX6_COROI5.070e-5389.29Cytochrome b559 subunit alpha n=87 Tax=Florideophy... [more]
A0A6B9TNT0_SARFS1.450e-5291.67Cytochrome b559 subunit alpha n=16 Tax=Fucales Tax... [more]
PSBE_EMIHU5.910e-5289.29Cytochrome b559 subunit alpha n=17 Tax=cellular or... [more]
A0A1C9CFD7_9FLOR1.270e-5188.10Cytochrome b559 subunit alpha n=3 Tax=Hildenbrandi... [more]
A0A0D3M5E1_9STRA3.330e-5191.36Cytochrome b559 subunit alpha n=6 Tax=Eukaryota Ta... [more]
M1JFG4_DIALT6.920e-5186.90Cytochrome b559 subunit alpha n=2 Tax=Pavlovaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11984contigM-pyrifera_M_contig11984:8708..8962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue5.6e-42
Seed eggNOG ortholog2880.D1J7D5
Preferred namepsbE
KEGG koko:K02707,ko:K02713
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryother localisation
EggNOG free text desc.photosynthetic electron transport chain
EggNOG OGs2CHYC@1,2S3QA@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.0840545-CDS-M-pyrifera_M_contig11984:8707..89621622815718.0840545-CDS-M-pyrifera_M_contig11984:8707..8962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 8708..8962 +
1692277536.588539-CDS-M-pyrifera_M_contig11984:8707..89621692277536.588539-CDS-M-pyrifera_M_contig11984:8707..8962Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 8708..8962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11984.4089.1prot_M-pyrifera_M_contig11984.4089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11984 8708..8962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11984.4089.1

>prot_M-pyrifera_M_contig11984.4089.1 ID=prot_M-pyrifera_M_contig11984.4089.1|Name=mRNA_M-pyrifera_M_contig11984.4089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MSGGSTGERPFSDIITSVRYWIIHSITIPSLFISGWLFISTGLAYDVFGT
PRPNEYFTQDRQQVPLVNDRFSAKEELEDLTRGL*
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mRNA from alignment at M-pyrifera_M_contig11984:8708..8962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11984.4089.1 ID=mRNA_M-pyrifera_M_contig11984.4089.1|Name=mRNA_M-pyrifera_M_contig11984.4089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:8708..8962+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGTGGTTCAACAGGGGAACGTCCTTTTTCTGATATCATAACAAG
TGTACGCTATTGGATTATTCATAGTATTACAATTCCTTCTTTATTTATTT
CTGGTTGGTTATTTATAAGTACTGGTTTAGCCTATGATGTTTTTGGAACT
CCTAGACCTAATGAATACTTTACACAGGATAGACAACAAGTTCCGTTAGT
AAATGATAGATTTAGTGCTAAGGAAGAATTAGAAGACTTAACAAGAGGAT
TATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11984:8708..8962+

>mRNA_M-pyrifera_M_contig11984.4089.1 ID=mRNA_M-pyrifera_M_contig11984.4089.1|Name=mRNA_M-pyrifera_M_contig11984.4089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:8708..8962+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGTGGTTCAACAGGGGAACGTCCTTTTTCTGATATCATAACAAG
TGTACGCTATTGGATTATTCATAGTATTACAATTCCTTCTTTATTTATTT
CTGGTTGGTTATTTATAAGTACTGGTTTAGCCTATGATGTTTTTGGAACT
CCTAGACCTAATGAATACTTTACACAGGATAGACAACAAGTTCCGTTAGT
AAATGATAGATTTAGTGCTAAGGAAGAATTAGAAGACTTAACAAGAGGAT
TATAAATGTCTGGTGGTTCAACAGGGGAACGTCCTTTTTCTGATATCATA
ACAAGTGTACGCTATTGGATTATTCATAGTATTACAATTCCTTCTTTATT
TATTTCTGGTTGGTTATTTATAAGTACTGGTTTAGCCTATGATGTTTTTG
GAACTCCTAGACCTAATGAATACTTTACACAGGATAGACAACAAGTTCCG
TTAGTAAATGATAGATTTAGTGCTAAGGAAGAATTAGAAGACTTAACAAG
AGGATTATAA
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