mRNA_M-pyrifera_M_contig11984.4088.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A6G6D7G8_ECTSI (Photosystem I assembly protein Ycf4 n=32 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7G8_ECTSI) HSP 1 Score: 349 bits (895), Expect = 2.530e-121 Identity = 172/180 (95.56%), Postives = 179/180 (99.44%), Query Frame = 1
Query: 19 NNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
NNLLKRDIVVGSRRFSN+FWTFILFFGGLGFLLTGISSYFQKNLLFFINSTEL+FLPQGLVMTFYGVV ISLSIYIGLT+FWDVGSGYNEFDKQNEL+RIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKR+IYLCTKD+REIPLTPVEQPRSLE+LENEASELARFLNINLEGL
Sbjct: 3 NNLLKRDIVVGSRRFSNFFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVGISLSIYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTPVEQPRSLEVLENEASELARFLNINLEGL 182
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A8F0F7W7_AKKLU (Photosystem I assembly protein Ycf4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F7W7_AKKLU) HSP 1 Score: 337 bits (865), Expect = 1.090e-116 Identity = 165/186 (88.71%), Postives = 178/186 (95.70%), Query Frame = 1
Query: 1 MSTEKINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
M+ ++IN +KRD+VVGSRRFSNYFW +LFFGG GFLLTGISSYFQKNLLFFINSTEL+FLPQGLVMTFYGVVAISLSIYI LT+FWD+GSGYNEFDK++EL+RIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKD+REIPLTPVEQPRSLE LENEASELARFLNINLEGL
Sbjct: 1 MNNDQINPFIKRDVVVGSRRFSNYFWALVLFFGGAGFLLTGISSYFQKNLLFFINSTELSFLPQGLVMTFYGVVAISLSIYIALTIFWDIGSGYNEFDKRDELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLETLENEASELARFLNINLEGL 186
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A344PFE2_9PHAE (Photosystem I assembly protein Ycf4 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFE2_9PHAE) HSP 1 Score: 331 bits (848), Expect = 3.700e-114 Identity = 162/180 (90.00%), Postives = 173/180 (96.11%), Query Frame = 1
Query: 19 NNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
+NLLKRDIVVGSRRFSN+FW FILFFGGLGF LTG+ SYF+KN LFFINS +LAFLPQGL+MTFYGVVAISLSIYI LTVFWDVGSGYNEFDKQNEL+RIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKR+IYLCTKD+REIPLT VEQPRSLE+LENEASELARFLNINLEG+
Sbjct: 3 DNLLKRDIVVGSRRFSNFFWAFILFFGGLGFFLTGVLSYFKKNFLFFINSNDLAFLPQGLIMTFYGVVAISLSIYISLTVFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTAVEQPRSLEVLENEASELARFLNINLEGV 182
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A1L2F1V9_9PHAE (Photosystem I assembly protein Ycf4 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1V9_9PHAE) HSP 1 Score: 328 bits (842), Expect = 3.490e-113 Identity = 160/186 (86.02%), Postives = 175/186 (94.09%), Query Frame = 1
Query: 1 MSTEKINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
MS E I +LLKRDIVVGSRRFSNYFWT ILF GGLGFL+ GISSYFQKNLL FINS +L+FLPQG++MTFYGV+AI LS YIGLT+FWDVGSGYNEFDK+NELVRIVRRGFPGKNR+ILLVY F+N+KSIKLNIQDG+NPKR+IYLCTKD+REIPLTPVEQPRSLEILENEASELARFLNINLEGL
Sbjct: 1 MSVEDIGSLLKRDIVVGSRRFSNYFWTIILFLGGLGFLIAGISSYFQKNLLGFINSEQLSFLPQGVIMTFYGVIAIGLSFYIGLTIFWDVGSGYNEFDKENELVRIVRRGFPGKNRKILLVYQFRNLKSIKLNIQDGLNPKRIIYLCTKDQREIPLTPVEQPRSLEILENEASELARFLNINLEGL 186
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A8F0F7K4_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7K4_9PHAE) HSP 1 Score: 321 bits (822), Expect = 3.770e-110 Identity = 158/182 (86.81%), Postives = 170/182 (93.41%), Query Frame = 1
Query: 13 KINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
K N L+KRDIV+GSRR SNYFWT ILF GGL FL+TGISSYFQ+N L FINS EL+FLPQGLVMTFYGVVA+SLSIYIGLT+FWD+GSGYNEFDKQ ELVRIVR+GFPGKNRQILLVY+F NIKSIKLNIQDGINPKRVIYLCTKD+REIPLTPVEQPRSLE+LENEAS LARFLNINLEGL
Sbjct: 4 KSNELIKRDIVIGSRRISNYFWTVILFIGGLAFLITGISSYFQRNFLPFINSFELSFLPQGLVMTFYGVVALSLSIYIGLTIFWDIGSGYNEFDKQTELVRIVRKGFPGKNRQILLVYSFNNIKSIKLNIQDGINPKRVIYLCTKDQREIPLTPVEQPRSLELLENEASNLARFLNINLEGL 185
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: Q2PQH1_FUCVE (Photosystem I assembly protein Ycf4 n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH1_FUCVE) HSP 1 Score: 318 bits (816), Expect = 3.210e-109 Identity = 153/186 (82.26%), Postives = 172/186 (92.47%), Query Frame = 1
Query: 1 MSTEKINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
M +E I+NLLKRDI++GSRRFSNYFWT ILFFGGLGFL+ GISSY Q N+LFFI+S EL FLPQGL+MTFYGV+AISLS+YI LT+FWDVGSGYNEFDK+N+LVRIVR GFPGKNR+ILLVY FKN+KSIKL IQDGINPKR+IYLCTKD+REIPLTPVEQPR LE LEN+ASELA+FLNINLEGL
Sbjct: 1 MISENIDNLLKRDIIIGSRRFSNYFWTIILFFGGLGFLIAGISSYLQNNILFFIDSKELTFLPQGLIMTFYGVIAISLSLYISLTIFWDVGSGYNEFDKENQLVRIVRLGFPGKNRKILLVYQFKNLKSIKLTIQDGINPKRIIYLCTKDQREIPLTPVEQPRPLESLENDASELAKFLNINLEGL 186
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A8E6D5U2_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5U2_9PHAE) HSP 1 Score: 310 bits (794), Expect = 7.480e-106 Identity = 155/187 (82.89%), Postives = 167/187 (89.30%), Query Frame = 1
Query: 1 MSTEKI-NNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
M+ KI NNLLKRDI++GSRRFSNYFW FIL GGLGFLL G+SSYF+KN L F NS EL F+PQGLVMTFYGVVAISLSIYI LT+ WDVG GYNEFDK EL+RIVRRGFPGKNRQILLVY+F+NIKSIKLNIQDGINPKR+IYLCTKDKREIPLTPVEQPR L ILE EASELA+FLNINLEGL
Sbjct: 1 MNMSKITNNLLKRDIIIGSRRFSNYFWAFILLLGGLGFLLAGVSSYFKKNFLPFGNSIELNFVPQGLVMTFYGVVAISLSIYIALTILWDVGGGYNEFDKDKELIRIVRRGFPGKNRQILLVYSFQNIKSIKLNIQDGINPKRIIYLCTKDKREIPLTPVEQPRPLNILETEASELAKFLNINLEGL 187
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A6B7IL95_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IL95_9PHAE) HSP 1 Score: 309 bits (792), Expect = 1.270e-103 Identity = 150/163 (92.02%), Postives = 160/163 (98.16%), Query Frame = 1
Query: 19 NNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILE 507
+NLLKRDIVVGSRRFSN+FWTF+LFFGGLGFLL GISSYFQKNL+FFINS ELAFLPQGLVMTFYGVVAISLS+YIGLT+FWDVGSGYNEFDKQNEL+RIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKR+IYLCTKD+REIPLTP EQPRSLE+LE
Sbjct: 3 DNLLKRDIVVGSRRFSNFFWTFVLFFGGLGFLLAGISSYFQKNLIFFINSMELAFLPQGLVMTFYGVVAISLSLYIGLTIFWDVGSGYNEFDKQNELIRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRIIYLCTKDQREIPLTPFEQPRSLEVLE 165
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: A0A2I4Q2G9_9PHAE (Photosystem I assembly protein Ycf4 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G9_9PHAE) HSP 1 Score: 297 bits (760), Expect = 1.130e-100 Identity = 138/179 (77.09%), Postives = 165/179 (92.18%), Query Frame = 1
Query: 22 NLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
+++KRDI++GSRRFSN FW ILF GG+GFLLTGIS+Y+QKN L F+N+ +L+FLPQGL+MTFYG++ +SLS++I LT+FWDVGSGYNEF+KQ EL+RIVRRGFPGKNR+ILLVY F NIKSIKLNIQ+GINPKR+IYLCTKD+REIPLTPVEQPRSL++LENEAS LARFLNI LEGL
Sbjct: 9 HIIKRDIIIGSRRFSNLFWAIILFLGGVGFLLTGISTYYQKNFLPFVNTADLSFLPQGLIMTFYGIIGLSLSLFISLTIFWDVGSGYNEFNKQTELIRIVRRGFPGKNRKILLVYPFNNIKSIKLNIQEGINPKRIIYLCTKDEREIPLTPVEQPRSLKLLENEASNLARFLNIKLEGL 187
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Match: B7T212_VAULI (Photosystem I assembly protein Ycf4 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T212_VAULI) HSP 1 Score: 277 bits (708), Expect = 8.810e-93 Identity = 135/182 (74.18%), Postives = 157/182 (86.26%), Query Frame = 1
Query: 13 KINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLLFFINSTELAFLPQGLVMTFYGVVAISLSIYIGLTVFWDVGSGYNEFDKQNELVRIVRRGFPGKNRQILLVYAFKNIKSIKLNIQDGINPKRVIYLCTKDKREIPLTPVEQPRSLEILENEASELARFLNINLEGL 558
KI NL++RDI++GSRRFSNYFW IL GGLGFLL G SSY + NLL+F N TEL F+PQG+VMTFYGVVAISLS YI LT+ WDVG+GYNEF+K +ELVRI+R+GFPGKNRQILLVY F NIKSIKL IQDGINPKR+++LCTKD+R+IPL VEQPRSL LE +ASELA+FL +NLEGL
Sbjct: 4 KIKNLIRRDIILGSRRFSNYFWALILAIGGLGFLLAGFSSYSKINLLYFANPTELIFIPQGIVMTFYGVVAISLSFYITLTIIWDVGAGYNEFNKVDELVRIMRKGFPGKNRQILLVYPFNNIKSIKLTIQDGINPKRLLFLCTKDQRQIPLNQVEQPRSLLELETQASELAKFLEVNLEGL 185 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11984.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11984.4088.1 >prot_M-pyrifera_M_contig11984.4088.1 ID=prot_M-pyrifera_M_contig11984.4088.1|Name=mRNA_M-pyrifera_M_contig11984.4088.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp MSTEKINNLLKRDIVVGSRRFSNYFWTFILFFGGLGFLLTGISSYFQKNLback to top mRNA from alignment at M-pyrifera_M_contig11984:7810..8370+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11984.4088.1 ID=mRNA_M-pyrifera_M_contig11984.4088.1|Name=mRNA_M-pyrifera_M_contig11984.4088.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:7810..8370+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11984:7810..8370+ >mRNA_M-pyrifera_M_contig11984.4088.1 ID=mRNA_M-pyrifera_M_contig11984.4088.1|Name=mRNA_M-pyrifera_M_contig11984.4088.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:7810..8370+ (Macrocystis pyrifera P11B4 male)back to top |