mRNA_M-pyrifera_M_contig11984.4087.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11984.4087.1
Unique NamemRNA_M-pyrifera_M_contig11984.4087.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A6G6D758_ECTSI (Photosystem I reaction center subunit XI n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D758_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 1.810e-91
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESE--VINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLDY 435
            MTSFIKPYN+DPSVGHLSTPVTSSAATKAYLGSLP YRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLR SEISLLIGFLSS+GL+T+LTVCLAMYGKVTFQES+  V+NKNDLLNGKNWNQFTSGFF+GSFGGVSFAYLILLNLDY
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAYLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRGSEISLLIGFLSSIGLITLLTVCLAMYGKVTFQESDNDVVNKNDLLNGKNWNQFTSGFFVGSFGGVSFAYLILLNLDY 147          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A2R4QPZ7_9PHAE (Photosystem I reaction center subunit XI n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPZ7_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 6.340e-87
Identity = 129/144 (89.58%), Postives = 137/144 (95.14%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLD 432
            MTSFIKPYNDDPSVGHLSTP+TSSAATKAYL SLP YRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLR SE+SLLIGFLSSV LVT+LTVCLAMYGKVTF++S+VIN N+LL  KNWNQFTSGFFIGSFGGVSFAYLILLN+D
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELSLLIGFLSSVALVTLLTVCLAMYGKVTFEDSDVINTNELLTSKNWNQFTSGFFIGSFGGVSFAYLILLNID 144          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A6B7EXU1_9PHAE (Photosystem I reaction center subunit XI n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A6B7EXU1_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.090e-85
Identity = 131/146 (89.73%), Postives = 139/146 (95.21%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESE--VINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLD 432
            MTSFIKPYN+DPSVGHLSTPVTSSAATKA+LGSLP YRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLR SEI+LLIGFLSSVGLVTILTVCLAMYGKVTFQE++    N+NDLL+GKNWNQFTSGFF+GSFGGVSFAYLILLNL 
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAFLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRTSEIALLIGFLSSVGLVTILTVCLAMYGKVTFQEADNDSNNRNDLLSGKNWNQFTSGFFVGSFGGVSFAYLILLNLS 146          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A1L2F1Y4_9PHAE (Photosystem I reaction center subunit XI n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1Y4_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.430e-83
Identity = 126/145 (86.90%), Postives = 134/145 (92.41%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLDY 435
            MTSFIKPYNDDPSVGHLSTP+TSSAATKAYL SLP YRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLR SE++ LIGFLSSVGL+TILTVCLAMYGKVTF +S+  N  +LL  KNWNQFTSGFFIGSFGGVSFAYLILLNL+Y
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELAPLIGFLSSVGLITILTVCLAMYGKVTFDDSDSTNTIELLTSKNWNQFTSGFFIGSFGGVSFAYLILLNLNY 145          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A8F0JXT2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXT2_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 9.040e-82
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNL 429
            MTSFIKP+NDDPSVGHLSTPVTSSAATKAYL +LP YRKGLSPLLRG+EIGMAHGYLL+GPF+KLGPLR SEISLL+GFLSS+ LVT+LT+CL MYGKVTFQE + +N+NDLLN KNWN+FTSGF IGSFGG SFAYLILLNL
Sbjct:    1 MTSFIKPFNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSIALVTLLTICLVMYGKVTFQEYDEVNENDLLNSKNWNRFTSGFLIGSFGGASFAYLILLNL 143          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A8E5XRG2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.680e-78
Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINKND--LLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLDY 435
            MTSFIKPYN+DPSVGHLSTP+T+SAATKA+LG+LP YR GLSPLLRGLEIGMAHGYLLLGPF+KLGPLR SE+SLL GFLSS+GL+TILTVCLAMYGKVTFQ SE I++++  +L  +NWN+FTSGFFIGSFGG  FAYLILLNLD+
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPITASAATKAFLGNLPAYRNGLSPLLRGLEIGMAHGYLLLGPFDKLGPLRDSEVSLLAGFLSSIGLLTILTVCLAMYGKVTFQRSEKISEDNQGVLGYRNWNRFTSGFFIGSFGGAGFAYLILLNLDF 147          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A7S6U9X1_9STRA (Photosystem I reaction center subunit XI n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9X1_9STRA)

HSP 1 Score: 233 bits (595), Expect = 8.060e-77
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINK---NDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNL 429
            MTSFIKPYN+DP VGHLSTPVT+SA TKA+LGSLP+YR GLSPLLRGLEIGMAHGYLL+GPF+KLGPLR SEI+LL GFL+S+GL++ILT CL MYGKVTFQES  I K    DLL GKNWNQFTSGFFIG+FGG SFAYLILLNL
Sbjct:    1 MTSFIKPYNNDPFVGHLSTPVTTSATTKAFLGSLPIYRSGLSPLLRGLEIGMAHGYLLVGPFDKLGPLRNSEIALLAGFLASLGLISILTTCLIMYGKVTFQESNEIKKVANKDLLTGKNWNQFTSGFFIGAFGGASFAYLILLNL 146          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A2I4Q2H3_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H3_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 8.790e-76
Identity = 114/145 (78.62%), Postives = 131/145 (90.34%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEV-INKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLD 432
            M SFI+P+NDDPSVGHLSTP+TSSAATKAYL +LP YRKGLSPLLRGLE+GMAHGYLLLGPF KLGPLR SEISLL+GFLS+  L++ILT+CLAMYGKVTFQ+S   I+ NDLL   NW++FTSGFFIG+FGG+SFAYLILLNL+
Sbjct:    1 MISFIRPFNDDPSVGHLSTPITSSAATKAYLSNLPAYRKGLSPLLRGLEVGMAHGYLLLGPFAKLGPLRESEISLLVGFLSASALISILTICLAMYGKVTFQDSSKDISSNDLLTSTNWSRFTSGFFIGAFGGISFAYLILLNLE 145          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: B7T210_VAULI (Photosystem I reaction center subunit XI n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T210_VAULI)

HSP 1 Score: 196 bits (499), Expect = 3.490e-62
Identity = 94/149 (63.09%), Postives = 120/149 (80.54%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEV----INKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLDY 435
            M +FIKPYN+DP VGHLSTP+T+S  TK +LG+LP+YR+ LSPL RGLE+GMAHGYLL+GPFEKLGPLR SE++LL GF+S++GL+ IL +CL +YGK +FQES      I   DLL  + W+QFTSGF +G+FGG  FAYL+LLN+ +
Sbjct:    1 MANFIKPYNNDPFVGHLSTPITTSLITKTFLGNLPIYRENLSPLFRGLEVGMAHGYLLVGPFEKLGPLRNSEVALLSGFVSALGLIIILVLCLVIYGKASFQESPKASLKITNQDLLTKEGWSQFTSGFSVGAFGGAGFAYLLLLNITF 149          
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Match: A0A1Z1MSL9_9FLOR (Photosystem I reaction center subunit XI n=6 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MSL9_9FLOR)

HSP 1 Score: 188 bits (477), Expect = 8.580e-59
Identity = 91/143 (63.64%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVTFQESEVINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNL 429
            MT+FIKPYN DP VG+LSTP+++S+ TK+ L +LP YR+GLSPLLRGLEIGMAHGY L+GPF+KLGPLR ++I+LL GFLS+VGL+ ILT CL+MYG VTF  +   +K+ L     W+QFT+GFF+G+ GG  FAYL+L NL
Sbjct:    1 MTNFIKPYNRDPFVGNLSTPISTSSLTKSLLSNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRNTDIALLSGFLSAVGLIVILTACLSMYGSVTFSNNSDESKDILQTSGGWSQFTAGFFVGAVGGSGFAYLLLANL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11984.4087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D758_ECTSI1.810e-9192.52Photosystem I reaction center subunit XI n=36 Tax=... [more]
A0A2R4QPZ7_9PHAE6.340e-8789.58Photosystem I reaction center subunit XI n=3 Tax=F... [more]
A0A6B7EXU1_9PHAE1.090e-8589.73Photosystem I reaction center subunit XI n=2 Tax=C... [more]
A0A1L2F1Y4_9PHAE1.430e-8386.90Photosystem I reaction center subunit XI n=14 Tax=... [more]
A0A8F0JXT2_9PHAE9.040e-8283.92Photosystem I reaction center subunit XI n=1 Tax=P... [more]
A0A8E5XRG2_9PHAE6.680e-7880.27Photosystem I reaction center subunit XI n=1 Tax=I... [more]
A0A7S6U9X1_9STRA8.060e-7780.82Photosystem I reaction center subunit XI n=1 Tax=S... [more]
A0A2I4Q2H3_9PHAE8.790e-7678.62Photosystem I reaction center subunit XI n=1 Tax=D... [more]
B7T210_VAULI3.490e-6263.09Photosystem I reaction center subunit XI n=1 Tax=V... [more]
A0A1Z1MSL9_9FLOR8.580e-5963.64Photosystem I reaction center subunit XI n=6 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11984contigM-pyrifera_M_contig11984:6994..7431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.0
Seed ortholog evalue6.4e-70
Seed eggNOG ortholog2880.D1J7C4
Preferred namePSAL
KEGG koko:K02699
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28NVH@1,2QVFH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.0049968-CDS-M-pyrifera_M_contig11984:6993..74311622815718.0049968-CDS-M-pyrifera_M_contig11984:6993..7431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 6994..7431 -
1692277536.5599744-CDS-M-pyrifera_M_contig11984:6993..74311692277536.5599744-CDS-M-pyrifera_M_contig11984:6993..7431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11984 6994..7431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11984.4087.1prot_M-pyrifera_M_contig11984.4087.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11984 6994..7431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11984.4087.1

>prot_M-pyrifera_M_contig11984.4087.1 ID=prot_M-pyrifera_M_contig11984.4087.1|Name=mRNA_M-pyrifera_M_contig11984.4087.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLGSLPVYRKGLSPLLRGLEI
GMAHGYLLLGPFEKLGPLRASEISLLIGFLSSVGLVTILTVCLAMYGKVT
FQESEVINKNDLLNGKNWNQFTSGFFIGSFGGVSFAYLILLNLDY*
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mRNA from alignment at M-pyrifera_M_contig11984:6994..7431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11984.4087.1 ID=mRNA_M-pyrifera_M_contig11984.4087.1|Name=mRNA_M-pyrifera_M_contig11984.4087.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:6994..7431- (Macrocystis pyrifera P11B4 male)
ATGACAAGTTTTATTAAACCTTACAACGATGACCCTTCGGTTGGACACTT ATCAACACCAGTCACTTCATCAGCAGCAACAAAAGCTTATCTAGGTAGTT TACCAGTTTATAGAAAAGGACTATCTCCTCTTTTAAGAGGGTTAGAAATT GGTATGGCACATGGTTATTTATTACTAGGACCTTTTGAAAAATTAGGACC ATTACGAGCATCTGAAATTTCACTTCTAATTGGATTTCTATCCTCTGTAG GTTTAGTAACAATACTTACGGTTTGCTTAGCTATGTATGGGAAAGTAACT TTTCAAGAATCTGAGGTTATCAATAAAAATGATTTATTAAATGGTAAAAA TTGGAATCAATTCACTTCTGGATTTTTTATTGGTTCTTTTGGGGGTGTTA GTTTTGCTTATTTAATTTTGCTTAATTTAGATTATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11984:6994..7431-

>mRNA_M-pyrifera_M_contig11984.4087.1 ID=mRNA_M-pyrifera_M_contig11984.4087.1|Name=mRNA_M-pyrifera_M_contig11984.4087.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig11984:6994..7431- (Macrocystis pyrifera P11B4 male)
ATGACAAGTTTTATTAAACCTTACAACGATGACCCTTCGGTTGGACACTT
ATCAACACCAGTCACTTCATCAGCAGCAACAAAAGCTTATCTAGGTAGTT
TACCAGTTTATAGAAAAGGACTATCTCCTCTTTTAAGAGGGTTAGAAATT
GGTATGGCACATGGTTATTTATTACTAGGACCTTTTGAAAAATTAGGACC
ATTACGAGCATCTGAAATTTCACTTCTAATTGGATTTCTATCCTCTGTAG
GTTTAGTAACAATACTTACGGTTTGCTTAGCTATGTATGGGAAAGTAACT
TTTCAAGAATCTGAGGTTATCAATAAAAATGATTTATTAAATGGTAAAAA
TTGGAATCAATTCACTTCTGGATTTTTTATTGGTTCTTTTGGGGGTGTTA
GTTTTGCTTATTTAATTTTGCTTAATTTAGATTATTAGATGACAAGTTTT
ATTAAACCTTACAACGATGACCCTTCGGTTGGACACTTATCAACACCAGT
CACTTCATCAGCAGCAACAAAAGCTTATCTAGGTAGTTTACCAGTTTATA
GAAAAGGACTATCTCCTCTTTTAAGAGGGTTAGAAATTGGTATGGCACAT
GGTTATTTATTACTAGGACCTTTTGAAAAATTAGGACCATTACGAGCATC
TGAAATTTCACTTCTAATTGGATTTCTATCCTCTGTAGGTTTAGTAACAA
TACTTACGGTTTGCTTAGCTATGTATGGGAAAGTAACTTTTCAAGAATCT
GAGGTTATCAATAAAAATGATTTATTAAATGGTAAAAATTGGAATCAATT
CACTTCTGGATTTTTTATTGGTTCTTTTGGGGGTGTTAGTTTTGCTTATT
TAATTTTGCTTAATTTAGATTATTAG
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