mRNA_M-pyrifera_M_contig119835.4082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119835.4082.1
Unique NamemRNA_M-pyrifera_M_contig119835.4082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A2E7KFP4_9PLAN (AXE1 domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFP4_9PLAN)

HSP 1 Score: 271 bits (694), Expect = 1.710e-84
Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = 1
Query:    7 SDHRGTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE 429
            SD+ GT W G R  +EQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQ LGTPALT +QIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE
Sbjct:  630 SDNDGTAWRGTRAVVEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQHLGTPALTVQQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE 770          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A518A3Q0_9PLAN (Alpha/beta hydrolase family protein n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3Q0_9PLAN)

HSP 1 Score: 243 bits (621), Expect = 5.390e-74
Identity = 115/141 (81.56%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    7 SDHRGTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE 429
            SD  GT W G R  +++A +VYADQGA GKVKAWFEAGGGHRPYM+HPDALLWI +QLGTP LT  QI+ +PTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLT IDRSQLACLKPEERGTP FTLEGWLSQIE +E
Sbjct:  604 SDDDGTAWRGTRAAVKRAAQVYADQGAAGKVKAWFEAGGGHRPYMAHPDALLWIHEQLGTPLLTKAQIRELPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTPIDRSQLACLKPEERGTPAFTLEGWLSQIEHHE 744          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A517RD45_9PLAN (Alpha/beta hydrolase family protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RD45_9PLAN)

HSP 1 Score: 213 bits (542), Expect = 1.510e-62
Identity = 99/141 (70.21%), Postives = 113/141 (80.14%), Query Frame = 1
Query:    7 SDHRGTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE 429
            SD  G  W G R  +  A  VY  QGA G+V+AWFEA GGHRPYMSHPDALLWIQQ LGTP LT ++I+ +PTVNSGRWCDA QI+LERLYGTDLHQRGATLADF L+ +  ++LACLKPEERGTP FTLEGWL QIE+ +
Sbjct:  600 SDDDGAAWRGTRSAVSDAANVYQTQGAAGRVQAWFEAKGGHRPYMSHPDALLWIQQHLGTPLLTKQEIQKLPTVNSGRWCDAHQIRLERLYGTDLHQRGATLADFKLSPLSPTKLACLKPEERGTPAFTLEGWLQQIEQTD 740          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A2D5VEL9_9BACT (AXE1 domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D5VEL9_9BACT)

HSP 1 Score: 167 bits (423), Expect = 8.010e-48
Identity = 75/135 (55.56%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   19 GTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIER 423
            GT W   R  + +   VY   GA GK++ WFE+GGGHRPY ++  AL WI + +GTP  + E+I+ +PTVNSG WCDA  + LE LYGT+LHQRGATL D GL LI R +LACL+P+E G P++T+EGWL+ IER
Sbjct:  251 GTAWRETRSSVAKTAEVYESMGAGGKIEYWFESGGGHRPYSAYKVALEWIHRYMGTPGWSLEKIQYLPTVNSGLWCDANNVVLENLYGTNLHQRGATLPDLGLRLIKREELACLRPDEIGDPQYTIEGWLNGIER 385          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A2E5EH43_9BACT (AXE1 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E5EH43_9BACT)

HSP 1 Score: 162 bits (410), Expect = 8.330e-44
Identity = 74/134 (55.22%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   22 TPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIER 423
            T W G+   ++QA RV+   G    +++W+E  GGHRP+ ++ +A+ WI   LGTPA T+ QIK +PT+NSG +CDA +I LERLYGTDLHQRGATL D G+  + R QLA LKPEE G PEFT+EGWL +IE+
Sbjct:  607 TGWSGSDRAVDQARRVFDAFGTRSTIESWYEKDGGHRPFFAYREAIDWINNHLGTPAYTSGQIKDLPTMNSGDYCDANRIPLERLYGTDLHQRGATLVDLGVQPLKREQLAVLKPEEMGQPEFTVEGWLEEIEK 740          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A2E0XJG7_9BACT (AXE1 domain-containing protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2E0XJG7_9BACT)

HSP 1 Score: 160 bits (405), Expect = 4.340e-43
Identity = 73/131 (55.73%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   28 WGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIE 420
            W   R  +  A  VY   G+   ++AWFEA GGHRPY  +  +L WI Q LGTPA+T +QI+ +PTVNSG+WCD   I+LE LYGT LHQRGATL D GL    R +L+CLKP+E G+P+FT+EGWL +IE
Sbjct:  615 WERTRQVVSTASNVYKQLGSPDGIRAWFEAEGGHRPYFVYKQSLEWIHQHLGTPAMTLQQIRELPTVNSGQWCDQHGIQLEHLYGTPLHQRGATLPDLGLRPTPREKLSCLKPDELGSPQFTVEGWLQEIE 745          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A2D5VDY6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D5VDY6_9BACT)

HSP 1 Score: 149 bits (376), Expect = 7.340e-43
Identity = 71/132 (53.79%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   28 WGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIER 423
            W   R  +  A  VY   G+   + AWFEA GGHRPY  +  +L  I Q LGTPA+T +QI+ +PTVNSG+WCD   I+LE LYGT LHQRGATL D GL    R +L+ L+P+E G+P+FT+EGWL +IER
Sbjct:   65 WERMRQIVSTASNVYKQLGSPDGIHAWFEAEGGHRPYFIYKQSLECIHQHLGTPAMTLQQIRELPTVNSGQWCDQHGIQLEHLYGTPLHQRGATLPDLGLHPTPREKLSYLQPDELGSPQFTVEGWLQEIER 196          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A382K2B7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382K2B7_9ZZZZ)

HSP 1 Score: 148 bits (374), Expect = 2.700e-42
Identity = 73/134 (54.48%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   19 GTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIE 420
            GT W G +  L  A   + D    G++  WFE  GGHRPY  +  AL WI + LGTP  T EQI+ +PTVNSG+WCD Q I+LE+LYGT LHQRGATL D GL  I    LACL+P+E G P++TLEGWL   E
Sbjct:   89 GTAWEGTQRALADASPNFDD----GRLACWFEPDGGHRPYHGYKVALEWIHRHLGTPGWTLEQIRELPTVNSGQWCDGQGIELEKLYGTPLHQRGATLPDLGLKHIPHD-LACLRPDEIGNPQYTLEGWLDSFE 217          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A7C7V192_9PLAN (AXE1 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V192_9PLAN)

HSP 1 Score: 151 bits (382), Expect = 5.220e-41
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = 1
Query:   19 GTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIE 420
            G  W G R  + +A +VYA  G  GK+K WFE GGGHRPY ++  +L WI + LG P    E+I+ +P VN+G+WCD   I+LERLYGT LH RGATL D G+  +   +LA L P+E G PE+TLEGWL  IE
Sbjct:  286 GQAWRGTRRAVREASQVYAALGGAGKIKTWFEPGGGHRPYFAYKVSLEWIHEHLGAPDWPLERIRDLPAVNAGQWCDRYGIQLERLYGTPLHWRGATLPDLGIRPLSPRRLAVLHPDEIGRPEYTLEGWLDLIE 419          
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Match: A0A3B8MB41_9BACT (AXE1 domain-containing protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A3B8MB41_9BACT)

HSP 1 Score: 148 bits (374), Expect = 1.220e-40
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   19 GTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHPDALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQRGATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQI 417
            G  W   R  +EQ    +     EG++ +WFEAGGGHRPY  + DAL WI +  GTP + T  I  +PT+N+G WCD   I LERLYG +LHQRGATL D GL  I  ++LACL P E G PEFT+EGWL  I
Sbjct:  245 GYVWRDTRENVEQVREAFG----EGRIDSWFEAGGGHRPYHGYVDALEWISRHFGTPNVATHAITELPTLNAGTWCDQHGIVLERLYGVELHQRGATLPDLGLRPIKPTELACLTPNELGKPEFTIEGWLDAI 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119835.4082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2E7KFP4_9PLAN1.710e-8492.20AXE1 domain-containing protein n=8 Tax=Gimesia Tax... [more]
A0A518A3Q0_9PLAN5.390e-7481.56Alpha/beta hydrolase family protein n=5 Tax=Gimesi... [more]
A0A517RD45_9PLAN1.510e-6270.21Alpha/beta hydrolase family protein n=1 Tax=Gimesi... [more]
A0A2D5VEL9_9BACT8.010e-4855.56AXE1 domain-containing protein n=1 Tax=Candidatus ... [more]
A0A2E5EH43_9BACT8.330e-4455.22AXE1 domain-containing protein n=1 Tax=Verrucomicr... [more]
A0A2E0XJG7_9BACT4.340e-4355.73AXE1 domain-containing protein n=1 Tax=Candidatus ... [more]
A0A2D5VDY6_9BACT7.340e-4353.79Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A382K2B7_9ZZZZ2.700e-4254.48Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7C7V192_9PLAN5.220e-4152.24AXE1 domain-containing protein n=1 Tax=Planctomyce... [more]
A0A3B8MB41_9BACT1.220e-4052.63AXE1 domain-containing protein n=2 Tax=FCB group T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119835contigM-pyrifera_M_contig119835:91..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.7978737-CDS-M-pyrifera_M_contig119835:90..5221622815717.7978737-CDS-M-pyrifera_M_contig119835:90..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119835 91..522 -
1692277536.4779773-CDS-M-pyrifera_M_contig119835:90..5221692277536.4779773-CDS-M-pyrifera_M_contig119835:90..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119835 91..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119835.4082.1prot_M-pyrifera_M_contig119835.4082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119835 91..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119835.4082.1

>prot_M-pyrifera_M_contig119835.4082.1 ID=prot_M-pyrifera_M_contig119835.4082.1|Name=mRNA_M-pyrifera_M_contig119835.4082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
LGSDHRGTPWGGARPGLEQAGRVYADQGAEGKVKAWFEAGGGHRPYMSHP
DALLWIQQQLGTPALTTEQIKTMPTVNSGRWCDAQQIKLERLYGTDLHQR
GATLADFGLTLIDRSQLACLKPEERGTPEFTLEGWLSQIERNE*
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mRNA from alignment at M-pyrifera_M_contig119835:91..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119835.4082.1 ID=mRNA_M-pyrifera_M_contig119835.4082.1|Name=mRNA_M-pyrifera_M_contig119835.4082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig119835:91..522- (Macrocystis pyrifera P11B4 male)
CTCGGCTCCGACCACCGCGGGACCCCCTGGGGCGGGGCGCGCCCTGGCCT CGAGCAGGCCGGGCGAGTCTATGCCGACCAGGGAGCTGAGGGAAAGGTGA AGGCCTGGTTCGAAGCGGGAGGCGGCCATCGCCCTTATATGTCTCATCCG GATGCCCTGCTCTGGATTCAGCAACAATTGGGAACACCTGCGCTGACTAC GGAGCAGATCAAAACCATGCCAACCGTCAATTCCGGACGCTGGTGTGATG CGCAGCAGATCAAACTGGAGCGACTGTACGGCACCGACCTGCATCAGCGG GGGGCCACTCTGGCGGATTTCGGGCTGACGCTCATCGATCGCAGCCAGCT GGCGTGCCTCAAACCGGAGGAAAGAGGCACACCAGAGTTTACGCTGGAAG GCTGGCTGTCTCAGATTGAACGCAACGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119835:91..522-

>mRNA_M-pyrifera_M_contig119835.4082.1 ID=mRNA_M-pyrifera_M_contig119835.4082.1|Name=mRNA_M-pyrifera_M_contig119835.4082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig119835:91..522- (Macrocystis pyrifera P11B4 male)
CTCGGCTCCGACCACCGCGGGACCCCCTGGGGCGGGGCGCGCCCTGGCCT
CGAGCAGGCCGGGCGAGTCTATGCCGACCAGGGAGCTGAGGGAAAGGTGA
AGGCCTGGTTCGAAGCGGGAGGCGGCCATCGCCCTTATATGTCTCATCCG
GATGCCCTGCTCTGGATTCAGCAACAATTGGGAACACCTGCGCTGACTAC
GGAGCAGATCAAAACCATGCCAACCGTCAATTCCGGACGCTGGTGTGATG
CGCAGCAGATCAAACTGGAGCGACTGTACGGCACCGACCTGCATCAGCGG
GGGGCCACTCTGGCGGATTTCGGGCTGACGCTCATCGATCGCAGCCAGCT
GGCGTGCCTCAAACCGGAGGAAAGAGGCACACCAGAGTTTACGCTGGAAG
GCTGGCTGTCTCAGATTGAACGCAACGAATAGCTCGGCTCCGACCACCGC
GGGACCCCCTGGGGCGGGGCGCGCCCTGGCCTCGAGCAGGCCGGGCGAGT
CTATGCCGACCAGGGAGCTGAGGGAAAGGTGAAGGCCTGGTTCGAAGCGG
GAGGCGGCCATCGCCCTTATATGTCTCATCCGGATGCCCTGCTCTGGATT
CAGCAACAATTGGGAACACCTGCGCTGACTACGGAGCAGATCAAAACCAT
GCCAACCGTCAATTCCGGACGCTGGTGTGATGCGCAGCAGATCAAACTGG
AGCGACTGTACGGCACCGACCTGCATCAGCGGGGGGCCACTCTGGCGGAT
TTCGGGCTGACGCTCATCGATCGCAGCCAGCTGGCGTGCCTCAAACCGGA
GGAAAGAGGCACACCAGAGTTTACGCTGGAAGGCTGGCTGTCTCAGATTG
AACGCAACGAATAG
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