mRNA_M-pyrifera_M_contig119832.4081.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119832.4081.1
Unique NamemRNA_M-pyrifera_M_contig119832.4081.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A0G4EIJ8_VITBC (MFS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EIJ8_VITBC)

HSP 1 Score: 119 bits (298), Expect = 1.270e-28
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTG-AIVLG---HPLSPYRLLILSGCCANLLALFVAAFCVREIS 396
            +GV+ SL+ G ++   SR  +   +D  VL  +L++ LP+GSAMGIPVMQIGIRRYT   NRS+ +++FYVMMN+AA+ AAPAID F   FPTG AI  G   + +S +RLLI +G    L++  ++  C+RE+S
Sbjct:   69 LGVKWSLVGGTAILFCSRLMLTFTTDVHVLTLILFTALPVGSAMGIPVMQIGIRRYTDEGNRSLGYSIFYVMMNLAAICAAPAIDAFHEAFPTGVAIAFGARTYRISSFRLLIFTGAVMTLVSFGISLTCMREVS 203          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A0G4H0P9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H0P9_VITBC)

HSP 1 Score: 114 bits (285), Expect = 8.950e-27
Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 NIGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTG-AIVLG---HPLSPYRLLILSGCCANLLALFVAAFCVREISTAEE 408
            N+GV+ SL+ G ++   SR  +   +D  +L  +L++ LP+GSAMGIPVMQIGIRRYT   NRS+ +++ YVMM++AA+ AAP +D     FPTG AI  G   + +S  RLLI +G    L++L V+  C+RE+ST+ +
Sbjct:   75 NLGVKWSLVGGTAILFCSRLMLTFITDVHLLTLILFTALPVGSAMGIPVMQIGIRRYTDEGNRSLGYSILYVMMSLAAICAAPTVDAIHEAFPTGVAIAFGAHTYRISSSRLLIFAGAVMTLVSLGVSLVCMREVSTSPQ 214          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A0G4IFI8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IFI8_9ALVE)

HSP 1 Score: 110 bits (276), Expect = 1.380e-25
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAI-------------------------VLGHP----LSPYRLLILSGCCANLLALFVAAFCVREISTAE 405
            +GV+ SLI G S+  +SR  +   +D RV++ +L+STLP+GSAMGIPVMQIGIRR+  P  +++A++LFYVMMN AA++AAPAID F   FP+G                           V G P    LS +RLLI SG    L AL  + F VR++   E
Sbjct:   87 LGVKRSLIFGCSILFLSRLVLTFVTDIRVVSFILFSTLPVGSAMGIPVMQIGIRRFAPPGCQTLAYSLFYVMMNAAAISAAPAIDAFHQFFPSGLDIPLPFPDLFWKLLGYATGVKDPMHRVTGPPRTIHLSSFRLLIGSGALMTLGALLTSVFLVRDVELVE 249          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A5J4Z791_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z791_PORPP)

HSP 1 Score: 108 bits (270), Expect = 5.540e-25
Identity = 57/133 (42.86%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    7 GVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAIVLGHPLSPYRLLILSGCCANLLALFVAAFCVREISTAE 405
            GVRASLI+G S+ +++R  +AL+  + V   +L S LP   ++GIP+M IG++RY++PANR++AF+ +Y +MNVAA+ A PA+D+ R  F  GA +    LSP RL++L+   +  L + V+   +REI   E
Sbjct:  121 GVRASLIIGSSVGMIARFVLALSRSKAVTLIILGSLLPFAESLGIPIMTIGVKRYSSPANRTIAFSFYYSIMNVAALCAGPAVDVLRLLFGDGARIGSFTLSPDRLVLLTSALSTFLCVCVSFMGIREIDVDE 253          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: M2XEN3_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XEN3_GALSU)

HSP 1 Score: 100 bits (250), Expect = 5.850e-23
Identity = 51/134 (38.06%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAIVLGHPLSPYRLLILSGCCANLLALFVAAFCVREISTAE 405
            +GVR +L+LG  +   SR  +AL+S  RV   +LY+ LP   ++GIPVM IGI+RYT   NR++A+++FY +MN+AA+ + P +D+ R  F  G ++ GH     +L+IL G  +  L + +    +R++   E
Sbjct:   16 LGVRYTLLLGAIMGTFSRWLLALSSSSRVTVFLLYTFLPFSESLGIPVMTIGIKRYTNSNNRTIAYSMFYTVMNIAALVSGPVVDVCRRWFGNGLVIWGHSFDSLQLVILCGSISTFLIILIVVLGMRDVQYTE 149          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A7J6MVQ1_PERCH (MFS domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MVQ1_PERCH)

HSP 1 Score: 101 bits (252), Expect = 1.720e-22
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTG-AIVLGH-----PLSPYRLLILSGCCANLLALFVAAFCVRE 390
            +G R SL  G S+ LVSR  +A      VLA VL+++LP+G A+GIPVMQI I+R+T   +RS AF++FYV+MN+AA+ AAP ID F  +FP G A+ L        +S YR+L L+G     L L +    +R+
Sbjct:  113 LGPRWSLTGGMSILLVSRLIMATTYSTHVLAAVLFTSLPIGGALGIPVMQIAIKRFTEGEDRSTAFSMFYVIMNIAAITAAPCIDAFHRSFPRGVALALAGGDIHITVSSYRILFLTGAFVTALCLIICLIFLRD 247          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A7J6S8M3_PEROL (MFS domain-containing protein n=6 Tax=Perkinsus TaxID=28000 RepID=A0A7J6S8M3_PEROL)

HSP 1 Score: 101 bits (251), Expect = 2.360e-22
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTG-AIVLGH-----PLSPYRLLILSGCCANLLALFVAAFCVRE 390
            +G R SL  G S+ LVSR  +A      VLA VL++ LP+G A+GIPVMQI I+R+T   +RS AF++FYV+MNVAA+ AAP ID F   FP G A+ L        +S YR+L L+G     L L +    +R+
Sbjct:  113 LGPRWSLTGGMSILLVSRLVMATTYSTHVLAAVLFTVLPIGGALGIPVMQIAIKRFTEGEDRSTAFSMFYVIMNVAAITAAPCIDAFHRAFPRGIALALAGGDVHITVSSYRILFLTGAFVTALCLVICLLFLRD 247          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A7S2GG11_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GG11_9DINO)

HSP 1 Score: 100 bits (250), Expect = 2.800e-22
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 NIGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAIVLGHPLSPYRLLILSGCCANLLALFVAAFCVREISTAE 405
            N+GVR SLI GF+  +V+R  +A+ +   V+  +LY  LP+GS++GIPV+ +GI+RYTTP  R  AF LFY +MNVAA+ +   +D        G  + G   S  RL++LSG C + + L +A F  REI   E
Sbjct:  107 NLGVRLSLITGFATLMVARFIVAVTTRLWVVKLMLYLFLPIGSSLGIPVLSMGIKRYTTPQRRGFAFGLFYTVMNVAALLSGLLVDFLEINLHGGVHIFGTHYSSRRLILLSGMCMSAIGLVIAFF-FREIKVEE 240          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: A0A7J6PKM2_PEROL (MFS domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PKM2_PEROL)

HSP 1 Score: 101 bits (251), Expect = 3.290e-22
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTG-AIVLGH-----PLSPYRLLILSGCCANLLALFVAAFCVRE 390
            +G R SL  G S+ LVSR  +A      VLA VL++ LP+G A+GIPVMQI I+R+T   +RS AF++FYV+MNVAA+ AAP ID F   FP G A+ L        +S YR+L L+G     L L +    +R+
Sbjct:   17 LGPRWSLTGGMSILLVSRLVMATTYSTHVLAAVLFTVLPIGGALGIPVMQIAIKRFTEGEDRSTAFSMFYVIMNVAAITAAPCIDAFHRAFPRGIALALAGGDVHITVSSYRILFLTGAFVTALCLVICLLFLRD 151          
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Match: C5L073_PERM5 (MFS domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L073_PERM5)

HSP 1 Score: 101 bits (251), Expect = 3.440e-22
Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    4 IGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVMQIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAIV------LGHPLSPYRLLILSGCCANLLALFVAAFCVRE 390
            +G R SL  G S+ LVSR  +A      VLA VL++ LP+G A+GIPVMQI I+R+T   +RS AF++FYV+MNVAA+ AAP ID F   FP G ++      +   +S YR+L L+G     L L +    +++
Sbjct:  113 LGPRWSLTGGMSILLVSRLVMATTYSTHVLAAVLFTVLPIGGALGIPVMQIAIKRFTEGEDRSTAFSMFYVIMNVAAITAAPCIDAFHRAFPRGVVLTLAGGDVHITVSSYRILFLTGAFVTALCLVICLLFLKD 247          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119832.4081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4EIJ8_VITBC1.270e-2848.89MFS domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A0G4H0P9_VITBC8.950e-2745.71Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4IFI8_9ALVE1.380e-2543.56Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A5J4Z791_PORPP5.540e-2542.86Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
M2XEN3_GALSU5.850e-2338.06Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7J6MVQ1_PERCH1.720e-2245.19MFS domain-containing protein n=1 Tax=Perkinsus ch... [more]
A0A7J6S8M3_PEROL2.360e-2245.93MFS domain-containing protein n=6 Tax=Perkinsus Ta... [more]
A0A7S2GG11_9DINO2.800e-2242.96Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7J6PKM2_PEROL3.290e-2245.93MFS domain-containing protein n=1 Tax=Perkinsus ol... [more]
C5L073_PERM53.440e-2243.70MFS domain-containing protein n=1 Tax=Perkinsus ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119832contigM-pyrifera_M_contig119832:3..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog35128.Thaps3936
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CPQW@1,2R2E8@2759,2XESG@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.7619507-CDS-M-pyrifera_M_contig119832:2..4191622815717.7619507-CDS-M-pyrifera_M_contig119832:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119832 3..419 +
1692277536.4667509-CDS-M-pyrifera_M_contig119832:2..4191692277536.4667509-CDS-M-pyrifera_M_contig119832:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119832 3..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119832.4081.1prot_M-pyrifera_M_contig119832.4081.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119832 3..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119832.4081.1

>prot_M-pyrifera_M_contig119832.4081.1 ID=prot_M-pyrifera_M_contig119832.4081.1|Name=mRNA_M-pyrifera_M_contig119832.4081.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
NIGVRASLILGFSLSLVSRTTIALASDRRVLATVLYSTLPLGSAMGIPVM
QIGIRRYTTPANRSVAFALFYVMMNVAAVAAAPAIDLFRATFPTGAIVLG
HPLSPYRLLILSGCCANLLALFVAAFCVREISTAEEDAV
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mRNA from alignment at M-pyrifera_M_contig119832:3..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119832.4081.1 ID=mRNA_M-pyrifera_M_contig119832.4081.1|Name=mRNA_M-pyrifera_M_contig119832.4081.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig119832:3..419+ (Macrocystis pyrifera P11B4 male)
AACATCGGCGTGCGCGCTTCCCTCATCCTCGGCTTCTCCCTGTCGCTGGT GTCGCGCACCACCATCGCGCTGGCCAGCGACCGTCGCGTGCTGGCCACCG TGCTCTACTCCACGCTTCCCTTGGGCAGCGCCATGGGCATCCCCGTGATG CAGATCGGCATCCGCCGCTACACCACGCCCGCCAATCGCTCCGTCGCCTT TGCCCTCTTTTACGTCATGATGAACGTGGCCGCCGTCGCCGCCGCGCCCG CCATCGACCTCTTCCGCGCCACTTTCCCCACCGGCGCCATCGTGCTGGGC CATCCGCTGTCCCCGTACCGCCTCCTCATCCTCTCCGGCTGCTGCGCCAA CTTGCTCGCGCTCTTCGTCGCCGCCTTTTGCGTCCGCGAGATCAGCACCG CGGAGGAGGACGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119832:3..419+

>mRNA_M-pyrifera_M_contig119832.4081.1 ID=mRNA_M-pyrifera_M_contig119832.4081.1|Name=mRNA_M-pyrifera_M_contig119832.4081.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig119832:3..419+ (Macrocystis pyrifera P11B4 male)
AACATCGGCGTGCGCGCTTCCCTCATCCTCGGCTTCTCCCTGTCGCTGGT
GTCGCGCACCACCATCGCGCTGGCCAGCGACCGTCGCGTGCTGGCCACCG
TGCTCTACTCCACGCTTCCCTTGGGCAGCGCCATGGGCATCCCCGTGATG
CAGATCGGCATCCGCCGCTACACCACGCCCGCCAATCGCTCCGTCGCCTT
TGCCCTCTTTTACGTCATGATGAACGTGGCCGCCGTCGCCGCCGCGCCCG
CCATCGACCTCTTCCGCGCCACTTTCCCCACCGGCGCCATCGTGCTGGGC
CATCCGCTGTCCCCGTACCGCCTCCTCATCCTCTCCGGCTGCTGCGCCAA
CTTGCTCGCGCTCTTCGTCGCCGCCTTTTGCGTCCGCGAGATCAGCACCG
CGGAGGAGGACGCCGTCAACATCGGCGTGCGCGCTTCCCTCATCCTCGGC
TTCTCCCTGTCGCTGGTGTCGCGCACCACCATCGCGCTGGCCAGCGACCG
TCGCGTGCTGGCCACCGTGCTCTACTCCACGCTTCCCTTGGGCAGCGCCA
TGGGCATCCCCGTGATGCAGATCGGCATCCGCCGCTACACCACGCCCGCC
AATCGCTCCGTCGCCTTTGCCCTCTTTTACGTCATGATGAACGTGGCCGC
CGTCGCCGCCGCGCCCGCCATCGACCTCTTCCGCGCCACTTTCCCCACCG
GCGCCATCGTGCTGGGCCATCCGCTGTCCCCGTACCGCCTCCTCATCCTC
TCCGGCTGCTGCGCCAACTTGCTCGCGCTCTTCGTCGCCGCCTTTTGCGT
CCGCGAGATCAGCACCGCGGAGGAGGACGCCGTC
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